Microbiomes of Two Pest Fly Species of Pennsylvania Mushroom Houses.

Simple Summary: Flies inhabit mushrooms or consume them incidentally throughout their lifecycle. In wild conditions, these flies are part of the recycling process and are not considered pests. However, in commercial mushroom houses, these flies can become problematic, as compost pests, through physical damage of mushroom production through consumption, or as vectors of pathogens or nematodes. Here, we describe the bacterial associates of two fly pest species of Pennsylvania mushroom houses. Mushroom cultivation vastly improves the yield of mushrooms under optimized, controlled conditions, but may be susceptible to opportunistic colonization by pest species that can establish themselves, as well as the pathogens and pests they may transmit. Here, we describe our investigation into the bacterial communities of adult Lycoriella ingenua (Diptera: Sciaridae) and Megaselia halterata (Diptera: Phoridae) collected from button mushroom (Agaricus bisporus) production houses in Pennsylvania. We collected adult flies and sequenced the hypervariable v4 region of the bacterial 16S rRNA using the Illumina MiSeq. The most abundant bacterial genus detected in both species was Wolbachia, but phylogenetic analysis revealed that the infections are from different clades. Future studies include the characterization of Wolbachia infections on fly behavior and biology, comparison of microbial diversity of fly species colonizing wild mushrooms, and other microbiota that may contribute to the success of certain pest fly species. [ABSTRACT FROM AUTHOR]