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Nirmatrelvir, A COVID‐19 Drug, and Human Serum Albumin: Computational Analysis of Their Molecular Interactions.

Authors :
Abubakar, Mujaheed
Bin Mohamad, Saharuddin
Zaroog, Mohammed Suleiman
Mahboob, Tooba
Rajagopal, Mogana Sundari
Tayyab, Saad
Source :
ChemistrySelect. Jun2024, Vol. 9 Issue 22, p1-7. 7p.
Publication Year :
2024

Abstract

Understanding the interaction between drugs and human serum albumin (HSA) is crucial for drug development. This study investigates the binding of a COVID‐19 drug, nirmatrelvir (NIR), to HSA through a computational approach. Molecular docking was employed to identify potential NIR binding site on HSA, and revealed distinct clusters at Sites I, II, and III. However, Site III exhibited a preference for NIR based on the lowest binding energy. Molecular dynamics simulation over 100 ns confirmed the stability of the NIR−HSA complex, with consistent binding at Site III. The compactness of HSA was maintained throughout the simulation period, as indicated by the radius of gyration, while structural flexibility analysis revealed typical fluctuations around some residues. Root‐mean‐square deviation (RMSD) patterns illustrated stability of the complex, and hydrogen bond analysis suggested four stable hydrogen bonds between NIR and HSA. These investigations offer insightful information on molecular interactions governing the stability of the NIR−HSA complex. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
23656549
Volume :
9
Issue :
22
Database :
Academic Search Index
Journal :
ChemistrySelect
Publication Type :
Academic Journal
Accession number :
177818956
Full Text :
https://doi.org/10.1002/slct.202400604