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How much can ChatGPT really help computational biologists in programming?

Authors :
Rahman, Chowdhury Rafeed
Wong, Limsoon
Source :
Journal of Bioinformatics & Computational Biology. Apr2024, Vol. 22 Issue 2, p1-18. 18p.
Publication Year :
2024

Abstract

ChatGPT, a recently developed product by openAI, is successfully leaving its mark as a multi-purpose natural language based chatbot. In this paper, we are more interested in analyzing its potential in the field of computational biology. A major share of work done by computational biologists these days involve coding up bioinformatics algorithms, analyzing data, creating pipelining scripts and even machine learning modeling and feature extraction. This paper focuses on the potential influence (both positive and negative) of ChatGPT in the mentioned aspects with illustrative examples from different perspectives. Compared to other fields of computer science, computational biology has (1) less coding resources, (2) more sensitivity and bias issues (deals with medical data), and (3) more necessity of coding assistance (people from diverse background come to this field). Keeping such issues in mind, we cover use cases such as code writing, reviewing, debugging, converting, refactoring, and pipelining using ChatGPT from the perspective of computational biologists in this paper. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
02197200
Volume :
22
Issue :
2
Database :
Academic Search Index
Journal :
Journal of Bioinformatics & Computational Biology
Publication Type :
Academic Journal
Accession number :
177537806
Full Text :
https://doi.org/10.1142/S021972002471001X