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The OpenMMPol library for polarizable QM/MM calculations of properties and dynamics.

Authors :
Bondanza, Mattia
Nottoli, Tommaso
Nottoli, Michele
Cupellini, Lorenzo
Lipparini, Filippo
Mennucci, Benedetta
Source :
Journal of Chemical Physics. 4/7/2024, Vol. 160 Issue 13, p1-13. 13p.
Publication Year :
2024

Abstract

We present a new library designed to provide a simple and straightforward way to implement QM/AMOEBA (Atomic Multipole Optimized Energetics for Biomolecular Applications) and other polarizable QM/MM (Molecular Mechanics) methods based on induced point dipoles. The library, herein referred to as OpenMMPol, is free and open-sourced and is engineered to address the increasing demand for accurate and efficient QM/MM simulations. OpenMMPol is specifically designed to allow polarizable QM/MM calculations of ground state energies and gradients and excitation properties. Key features of OpenMMPol include a modular architecture facilitating extensibility, parallel computing capabilities for enhanced performance on modern cluster architectures, a user-friendly interface for intuitive implementation, and a simple and flexible structure for providing input data. To show the capabilities offered by the library, we present an interface with PySCF to perform QM/AMOEBA molecular dynamics, geometry optimization, and excited-state calculation based on (time-dependent) density functional theory. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
00219606
Volume :
160
Issue :
13
Database :
Academic Search Index
Journal :
Journal of Chemical Physics
Publication Type :
Academic Journal
Accession number :
176472855
Full Text :
https://doi.org/10.1063/5.0198251