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Whole-genome sequence and annotation of Penstemon davidsonii.

Authors :
Ostevik, Kate L
Alabady, Magdy
Zhang, Mengrui
Rausher, Mark D
Source :
G3: Genes | Genomes | Genetics. Mar2024, Vol. 14 Issue 3, p1-5. 5p.
Publication Year :
2024

Abstract

Penstemon is the most speciose flowering plant genus endemic to North America. Penstemon species' diverse morphology and adaptation to various environments have made them a valuable model system for studying evolution. Here, we report the first full reference genome assembly and annotation for Penstemon davidsonii. Using PacBio long-read sequencing and Hi-C scaffolding technology, we constructed a de novo reference genome of 437,568,744 bases, with a contig N50 of 40 Mb and L50 of 5. The annotation includes 18,199 gene models, and both the genome and transcriptome assembly contain over 95% complete eudicot BUSCOs. This genome assembly will serve as a valuable reference for studying the evolutionary history and genetic diversity of the Penstemon genus. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
21601836
Volume :
14
Issue :
3
Database :
Academic Search Index
Journal :
G3: Genes | Genomes | Genetics
Publication Type :
Academic Journal
Accession number :
176131176
Full Text :
https://doi.org/10.1093/g3journal/jkad296