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A multi-cohort genome-wide association study in African ancestry individuals reveals risk loci for primary open-angle glaucoma.

Authors :
Verma, Shefali S.
Gudiseva, Harini V.
Chavali, Venkata R.M.
Salowe, Rebecca J.
Bradford, Yuki
Guare, Lindsay
Lucas, Anastasia
Collins, David W.
Vrathasha, Vrathasha
Nair, Rohini M.
Rathi, Sonika
Zhao, Bingxin
He, Jie
Lee, Roy
Zenebe-Gete, Selam
Bowman, Anita S.
McHugh, Caitlin P.
Zody, Michael C.
Pistilli, Maxwell
Khachatryan, Naira
Source :
Cell. Jan2024, Vol. 187 Issue 2, p464-464. 1p.
Publication Year :
2024

Abstract

Primary open-angle glaucoma (POAG), the leading cause of irreversible blindness worldwide, disproportionately affects individuals of African ancestry. We conducted a genome-wide association study (GWAS) for POAG in 11,275 individuals of African ancestry (6,003 cases; 5,272 controls). We detected 46 risk loci associated with POAG at genome-wide significance. Replication and post-GWAS analyses, including functionally informed fine-mapping, multiple trait co-localization, and in silico validation, implicated two previously undescribed variants (rs1666698 mapping to DBF4P2 ; rs34957764 mapping to ROCK1P1) and one previously associated variant (rs11824032 mapping to ARHGEF12) as likely causal. For individuals of African ancestry, a polygenic risk score (PRS) for POAG from our mega-analysis (African ancestry individuals) outperformed a PRS from summary statistics of a much larger GWAS derived from European ancestry individuals. This study quantifies the genetic architecture similarities and differences between African and non-African ancestry populations for this blinding disease. [Display omitted] • A comprehensive GWAS on African ancestry individuals with glaucoma was conducted • 46 risk loci significantly associated with glaucoma were detected • Variants in ROCK1P1 , ARHGEF12 , and DBF4P2 demonstrated likely causal pathophysiology • Polygenic risk scores derived from African ancestry individuals show enhanced strength Glaucoma represents a pressing public health need among African ancestry individuals. This study provides novel insight into the genetic architecture of glaucoma in this population by identifying gene variants with pathophysiological significance. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
00928674
Volume :
187
Issue :
2
Database :
Academic Search Index
Journal :
Cell
Publication Type :
Academic Journal
Accession number :
174790633
Full Text :
https://doi.org/10.1016/j.cell.2023.12.006