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An In Silico Study: Phytochemical Compounds Screening of Garcinia atroviridis Griff. ex T. Anders as Anti-DENV.

Authors :
Aini, Nur Sofiatul
Ansori, Arif Nur Muhammad
Kharisma, Viol Dhea
Murtadlo, Ahmad Affan Ali
Tamam, Muhammad Badrut
Sucipto, Teguh Hari
Jakhmola, Vikash
Rebezov, Maksim
Saklani, Taru
Zainul, Rahadian
Source :
Journal of Pure & Applied Microbiology. 2023, Vol. 17 Issue 4, p2467-2478. 12p.
Publication Year :
2023

Abstract

Dengue virus (DENV) is still global problem and infecting millions of people a year. This virus belongs to Flavivirus and consists of the structural and non-structural proteins including envelop (E), capsid (C), NS2B/NS3, and NS5. Garcinia atroviridis Griff. ex T. Anders is traditional plant that has broad potential as antioxidant, antibacterial, and anti-cancer activities. However, the anti-DENV potential of this plant is uncertain. The objective of this research is to find out the potential of the phytochemical compounds of G. atroviridis as DENV antiviral drugs targeting E, C, NSB2/NS3, and NS5 proteins using molecular simulation approach. Sample retrieval was obtained from PubChem and RCSB PDB. Drug- likeness analysis has been assessed with Swiss ADME based on the pharmacology and pharmacokinetics aspects. Toxicity prediction was done by pkCSM webserver. PyRx was carried out to screen ligand-protein interaction virtually. Visualization of the best interaction was displayed by BIOVIA Discovery Studio. CABS-flex 2.0 version webserver was performed to predict stability interaction. Atroviridin was determined as the most promising as DENV antiviral to be tested by the wet laboratory approach. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
09737510
Volume :
17
Issue :
4
Database :
Academic Search Index
Journal :
Journal of Pure & Applied Microbiology
Publication Type :
Academic Journal
Accession number :
174155408
Full Text :
https://doi.org/10.22207/JPAM.17.4.45