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Embedding phylogenetic trees in networks of low treewidth.

Authors :
van Iersel, Leo
Jones, Mark
Weller, Mathias
Source :
Discrete Mathematics & Theoretical Computer Science (DMTCS). 2023, Vol. 25 Issue 2, p1-50. 50p.
Publication Year :
2023

Abstract

Given a rooted, binary phylogenetic network and a rooted, binary phylogenetic tree, can the tree be embedded into the network? This problem, called TREE CONTAINMENT, arises when validating networks constructed by phylogenetic inference methods. We present the first algorithm for (rooted) TREE CONTAINMENT using the treewidth t of the input network N as parameter, showing that the problem can be solved in 2O(t2)·|N| time and space. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
13658050
Volume :
25
Issue :
2
Database :
Academic Search Index
Journal :
Discrete Mathematics & Theoretical Computer Science (DMTCS)
Publication Type :
Academic Journal
Accession number :
174026436