Back to Search Start Over

Analysis of transcriptome of single-cell RNA sequencing data using machine learning.

Authors :
Rajesh, Mothe
Martha, Sheshikala
Source :
Soft Computing - A Fusion of Foundations, Methodologies & Applications. Jul2023, Vol. 27 Issue 13, p9131-9141. 11p.
Publication Year :
2023

Abstract

Single-cell ribonucleic acid (RNA) sequencing technology is used to analyze transcriptomes of each cell individually and helps to identify rare cell populations. By using traditional applications, it is difficult to understand and analyze the transcriptomic profiles of cells at the single-cell level. So, to overcome these kinds of issues, machine learning technologies are playing a great role. In this paper, we analyzed single-cell RNA seq data by implementing linear dimensional reduction, identifying highly variable features, clustering the cells, nonlinear dimensional reduction, and identifying gene markers. This type of single-cell RNA sequencing analysis is much needed in identifying transcriptomic profile challenges in cells and heterogeneous characteristics. Our study helps researchers who are doing fundamental research in the field of bioinformatics and computational biology concerning single-cell RNA sequencing data. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
14327643
Volume :
27
Issue :
13
Database :
Academic Search Index
Journal :
Soft Computing - A Fusion of Foundations, Methodologies & Applications
Publication Type :
Academic Journal
Accession number :
163965202
Full Text :
https://doi.org/10.1007/s00500-023-08432-1