甘蔗 ScNRAMP 基因家族的鉴定与生物信息学分析.

NRAMP(natural resistance-associated macrophage proteins), which can transport metal ions such as Fe2+, Mn2+, Zn2+ and Cd2+, plays an essential role in response to heavy metal stress in plant. To better understand the characteristics of the ScNRAMP gene family, bioinformatics methods were employed to identify and comprehensively analyze ScNRAMP gene family which includes protein physicochemical properties, gene structure, cis-acting elements, conserved motif, domain and evolutionary relationships. The results were as follows: A total of 29 ScNRAMP genes were identified in the Saccharum spontaneum genome; These 29 genes were unevenly distributed on 19 chromosomes, and contained 6 to 10 conserved motifs; The encoded proteins were all unstable proteins with no signal peptides and the subcellular locations were all on the plasma membrane; The number of membranes ranged from 6 to 12, and the secondary structure was composed of α-helix and random coils as the main components; Moreover, cis-acting elements analysis suggested that ScNRAMP may be involved in regulation of stress and development by involving in phytohormone metabolism; The tissue-specific analysis based on RNA-seq transcriptomics expression data of Saccharum spontaneum, showed that spatiotemporal expression of 29 ScNRAMP genes in the leaves and stems of sugarcane at different development stages; Phylogenetic analysis showed that the 29 ScNRAMP genes can be divided into three subfamilies (I, Ⅱ and Ⅲ). This study can be useful to better understand the ScNRAMP gene family and provide significant candidate genes that respond to the stress of heavy metals in sugarcane for further study. [ABSTRACT FROM AUTHOR]