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Point configurations, phylogenetic trees, and dissimilarity vectors.

Authors :
Caminata, Alessio
Giansiracusa, Noah
Han-Bom Moon
Schaffler, Luca
Source :
Proceedings of the National Academy of Sciences of the United States of America. 3/23/2021, Vol. 118 Issue 12, p1-10. 10p.
Publication Year :
2021

Abstract

In 2004, Pachter and Speyer introduced the higher dissimilarity maps for phylogenetic trees and asked two important questions about their relation to the tropical Grassmannian. Multiple authors, using independent methods, answered affirmatively the first of these questions, showing that dissimilarity vectors lie on the tropical Grassmannian, but the second question, whether the set of dissimilarity vectors forms a tropical subvariety, remained opened. We resolve this question by showing that the tropical balancing condition fails. However, by replacing the definition of the dissimilarity map with a weighted variant, we show that weighted dissimilarity vectors form a tropical subvariety of the tropical Grassmannian in exactly the way that Pachter and Speyer envisioned. Moreover, we provide a geometric interpretation in terms of configurations of points on rational normal curves and construct a finite tropical basis that yields an explicit characterization of weighted dissimilarity vectors. [ABSTRACT FROM AUTHOR]

Subjects

Subjects :
*TROPICAL conditions
*TREES

Details

Language :
English
ISSN :
00278424
Volume :
118
Issue :
12
Database :
Academic Search Index
Journal :
Proceedings of the National Academy of Sciences of the United States of America
Publication Type :
Academic Journal
Accession number :
149521747
Full Text :
https://doi.org/10.1073/pnas.2021244118