Back to Search Start Over

Considering discrepancy when calibrating a mechanistic electrophysiology model.

Authors :
Chon Lok Lei
Ghosh, Sanmitra
Whittaker, Dominic G.
Aboelkassem, Yasser
Beattie, Kylie A.
Cantwell, Chris D.
Delhaas, Tammo
Houston, Charles
Novaes, Gustavo Montes
Panfilov, Alexander V.
Pathmanathan, Pras
Riabiz, Marina
dos Santos, RodrigoWeber
Walmsley, John
Worden, Keith
Mirams, Gary R.
Wilkinson, Richard D.
Source :
Philosophical Transactions of the Royal Society A: Mathematical, Physical & Engineering Sciences. 6/12/2020, Vol. 378 Issue 2173, p1-23. 23p.
Publication Year :
2020

Abstract

Uncertainty quantification (UQ) is a vital step in using mathematical models and simulations to take decisions. The field of cardiac simulation has begun to explore and adopt UQ methods to characterize uncertainty in model inputs and how that propagates through to outputs or predictions; examples of this can be seen in the papers of this issue. In this review and perspective piece, we draw attention to an important and under-addressed source of uncertainty in our predictions-that of uncertainty in the model structure or the equations themselves. The difference between imperfect models and reality is termed model discrepancy, and we are often uncertain as to the size and consequences of this discrepancy. Here, we provide two examples of the consequences of discrepancy when calibrating models at the ion channel and action potential scales. Furthermore, we attempt to account for this discrepancy when calibrating and validating an ion channel model using different methods, based on modelling the discrepancy using Gaussian processes and autoregressive-movingaverage models, then highlight the advantages and shortcomings of each approach. Finally, suggestions and lines of enquiry for future work are provided. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
1364503X
Volume :
378
Issue :
2173
Database :
Academic Search Index
Journal :
Philosophical Transactions of the Royal Society A: Mathematical, Physical & Engineering Sciences
Publication Type :
Academic Journal
Accession number :
143528953
Full Text :
https://doi.org/10.1098/rsta.2019.0349