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VeriNA3d: an R package for nucleic acids data mining.

Authors :
Gallego, Diego
Darré, Leonardo
Dans, Pablo D
Orozco, Modesto
Source :
Bioinformatics. 12/15/2019, Vol. 35 Issue 24, p5334-5336. 3p.
Publication Year :
2019

Abstract

Summary veriNA3d is an R package for the analysis of nucleic acids structural data, with an emphasis in complex RNA structures. In addition to single-structure analyses, veriNA3d also implements functions to handle whole datasets of mmCIF/PDB structures that could be retrieved from public/local repositories. Our package aims to fill a gap in the data mining of nucleic acids structures to produce flexible and high throughput analysis of structural databases. Availability and implementation http://mmb.irbbarcelona.org/gitlab/dgallego/veriNA3d. Supplementary information Supplementary data are available at Bioinformatics online. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
13674803
Volume :
35
Issue :
24
Database :
Academic Search Index
Journal :
Bioinformatics
Publication Type :
Academic Journal
Accession number :
141171766
Full Text :
https://doi.org/10.1093/bioinformatics/btz553