Neutralization of the Positive Charges on Histone Tails by RNA Promotes an Open Chromatin Structure.

RNA associates extensively with chromatin and can influence its structure; however, the potential role of the negative charges of RNA on chromatin structure remains unknown. Here, we demonstrate that RNA prevents precipitation of histones and can attenuate electrostatic interactions between histones and DNA, thereby loosening up the chromatin structure. This effect is independent of the sequence of RNA but dependent on its single-stranded nature, length, concentration, and negative charge. Opening and closure of chromatin by RNA occurs rapidly (within minutes) and passively (in permeabilized cells), in agreement with electrostatics. Accordingly, chromatin compaction following removal of RNA can be prevented by high ionic strength or neutralization of the positively charged histone tails by hyperacetylation. Finally, LINE1 repeat RNAs bind histone H2B and can decondense chromatin. We propose that RNA regulates chromatin opening and closure by neutralizing the positively charged tails of histones, reducing their electrostatic interactions with DNA. • RNA regulates opening and closure of chromatin via charge • RNA neutralizes histone tails and attenuates electrostatic compaction of chromatin • Histones precipitate following removal of single-stranded RNA • RNA facilitates formation of nucleosomes in vitro Dueva et al. discovered a charge-dependent role of RNA in the opening and closure of chromatin by neutralizing the positively charged tails of histones. This novel mechanism, distinct from protein-mediated chromatin modulation, is likely to exert a key influence on the state of chromatin and, thereby, on downstream cellular functions. [ABSTRACT FROM AUTHOR]