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A DNA barcoding approach for identification of hidden diversity in Parmeliaceae (Ascomycota): Parmelia sensu stricto as a case study.

Authors :
DIVAKAR, PRADEEP K.
LEAVITT, STEVEN D.
MOLINA, M. CARMEN
DEL-PRADO, RUTH
LUMBSCH, H. THORSTEN
CRESPO, ANA
Source :
Botanical Journal of the Linnean Society. Jan2016, Vol. 180 Issue 1, p21-29. 9p.
Publication Year :
2016

Abstract

Accurate specimen identification is challenging in groups with subtle or scarce taxonomically diagnostic characters, and the use of DNA barcodes can provide an effective means for consistent identification. Here, we investigate the utility of DNA barcode identification of species in a cosmopolitan genus of lichen-forming fungi, Parmelia (Parmeliaceae). Two hundred and two internal transcribed spacer (ITS) sequences generated from specimens collected from all continents, including Antarctica, were analysed, and DNA barcodes of 14 species of Parmelia s.s. are reported. Almost all species show a barcode gap. Overall, intraspecific divergence values were lower than the threshold previously established for Parmeliaceae. However, the mean and range were elevated by deep barcode divergences in three species, indicating the likely occurrence of overlooked specieslevel lineages. Here, we provide a DNA barcode reference library with well-identified specimens sampled worldwide and sequences from most of the type material to enable easy and fast accurate sample identification and to assist in uncovering overlooked species in Parmelia s.s. Further, our results confirm the efficiency of the ITS region in the identification of species of Parmelia s.s. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
00244074
Volume :
180
Issue :
1
Database :
Academic Search Index
Journal :
Botanical Journal of the Linnean Society
Publication Type :
Academic Journal
Accession number :
112061703
Full Text :
https://doi.org/10.1111/boj.12358