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Utilising established SDL-screening methods as a tool for the functional genomic characterisation of model and non-model organisms.

Authors :
Usher, Jane
Thomas, Graham
Haynes, Ken
Source :
FEMS Yeast Research. Dec2015, Vol. 15 Issue 8, p1-8. 8p. 3 Color Photographs, 1 Diagram, 1 Chart.
Publication Year :
2015

Abstract

The trend for large-scale genetic and phenotypic screens has revealed a wealth of information on biological systems. A major challenge is understanding how genes function and putative roles in networks. The majority of current gene knowledge is garnered from studies utilising the model yeast Saccharomyces cerevisiae. We demonstrate that synthetic dosage lethal genetic array methodologies can be used to study genetic networks in other yeasts, namely the fungal pathogen Candida glabrata, which has limited forward genetic tools, due to the lack of 'natural' mating. We performed two SDL screens in S. cerevisiae, overexpressing the transcriptional regulator UME6 as bait in the first screen and its C. glabrata ortholog CAGL0F05357g in the second. Analysis revealed that SDL maps share 204 common interactors, with 10 genetic interactions unique to C. glabrata indicating a level of genetic rewiring, indicative of linking genotype to phenotype in fungal pathogens. This was further validated by incorporating our results into the global genetic landscape map of the cell from Costanzo et al. to identify common and novel gene attributes. This data demonstrated the utility large data sets and more robust analysis made possible by interrogating exogenous genes in the context of the eukaryotic global genetic landscape. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
15671356
Volume :
15
Issue :
8
Database :
Academic Search Index
Journal :
FEMS Yeast Research
Publication Type :
Academic Journal
Accession number :
111165995
Full Text :
https://doi.org/10.1093/femsyr/fov091