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QuasR: quantification and annotation of short reads in R.
- Source :
-
Bioinformatics . 4/1/2015, Vol. 31 Issue 7, p1130-1132. 3p. 1 Graph. - Publication Year :
- 2015
-
Abstract
- Summary: QuasR is a package for the integrated analysis of high-throughput sequencing data in R, covering all steps from read preprocessing, alignment and quality control to quantification. QuasR supports different experiment types (including RNA-seq, ChIP-seq and Bis-seq) and analysis variants (e.g. paired-end, stranded, spliced and allele-specific), and is integrated in Bioconductor so that its output can be directly processed for statistical analysis and visualization. [ABSTRACT FROM AUTHOR]
Details
- Language :
- English
- ISSN :
- 13674803
- Volume :
- 31
- Issue :
- 7
- Database :
- Academic Search Index
- Journal :
- Bioinformatics
- Publication Type :
- Academic Journal
- Accession number :
- 109372364
- Full Text :
- https://doi.org/10.1093/bioinformatics/btu781