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1. The genome of the model beetle and pest Tribolium castaneum.

Author

Richards, Stephen, Gibbs, Richard A, Weinstock, George M, Brown, Susan J, Denell, Robin, Beeman, Richard W, Gibbs, Richard, Bucher, Gregor, Friedrich, Markus, Grimmelikhuijzen, Cornelis J P, Klingler, Martin, Lorenzen, Marce, Roth, Siegfried, Schröder, Reinhard, Tautz, Diethard, Zdobnov, Evgeny M, Muzny, Donna, Attaway, Tony, Bell, Stephanie, Buhay, Christian J, Chandrabose, Mimi N, Chavez, Dean, Clerk-Blankenburg, Kerstin P, Cree, Andrew, Dao, Marvin, Davis, Clay, Chacko, Joseph, Dinh, Huyen, Dugan-Rocha, Shannon, Fowler, Gerald, Garner, Toni T, Garnes, Jeffrey, Gnirke, Andreas, Hawes, Alica, Hernandez, Judith, Hines, Sandra, Holder, Michael, Hume, Jennifer, Jhangiani, Shalini N, Joshi, Vandita, Khan, Ziad Mohid, Jackson, LaRonda, Kovar, Christie, Kowis, Andrea, Lee, Sandra, Lewis, Lora R, Margolis, Jon, Morgan, Margaret, Nazareth, Lynne V, Nguyen, Ngoc, Okwuonu, Geoffrey, Parker, David, Ruiz, San-Juana, Santibanez, Jireh, Savard, Joël, Scherer, Steven E, Schneider, Brian, Sodergren, Erica, Vattahil, Selina, Villasana, Donna, White, Courtney S, Wright, Rita, Park, Yoonseong, Lord, Jeff, Oppert, Brenda, Brown, Susan, Wang, Liangjiang, Weinstock, George, Liu, Yue, Worley, Kim, Elsik, Christine G, Reese, Justin T, Elhaik, Eran, Landan, Giddy, Graur, Dan, Arensburger, Peter, Atkinson, Peter, Beidler, Jim, Demuth, Jeffery P, Drury, Douglas W, Du, Yu-Zhou, Fujiwara, Haruhiko, Maselli, Vincenza, Osanai, Mizuko, Robertson, Hugh M, Tu, Zhijian, Wang, Jian-jun, Wang, Suzhi, Song, Henry, Zhang, Lan, Werner, Doreen, Stanke, Mario, Morgenstern, Burkhard, Solovyev, Victor, Kosarev, Peter, Brown, Garth, Chen, Hsiu-Chuan, Ermolaeva, Olga, Hlavina, Wratko, Kapustin, Yuri, Kiryutin, Boris, Kitts, Paul, Maglott, Donna, Pruitt, Kim, Sapojnikov, Victor, Souvorov, Alexandre, Mackey, Aaron J, Waterhouse, Robert M, Wyder, Stefan, Kriventseva, Evgenia V, Kadowaki, Tatsuhiko, Bork, Peer, Aranda, Manuel, Bao, Riyue, Beermann, Anke, Berns, Nicola, Bolognesi, Renata, Bonneton, François, Bopp, Daniel, Butts, Thomas, Chaumot, Arnaud, Denell, Robin E, Ferrier, David E K, Gordon, Cassondra M, Jindra, Marek, Lan, Que, Lattorff, H Michael G, Laudet, Vincent, von Levetsow, Cornelia, Liu, Zhenyi, Lutz, Rebekka, Lynch, Jeremy A, da Fonseca, Rodrigo Nunes, Posnien, Nico, Reuter, Rolf, Schinko, Johannes B, Schmitt, Christian, Schoppmeier, Michael, Shippy, Teresa D, Simonnet, Franck, Marques-Souza, Henrique, Tomoyasu, Yoshinori, Trauner, Jochen, Van der Zee, Maurijn, Vervoort, Michel, Wittkopp, Nadine, Wimmer, Ernst A, Yang, Xiaoyun, Jones, Andrew K, Sattelle, David B, Ebert, Paul R, Nelson, David, Scott, Jeffrey G, Muthukrishnan, Subbaratnam, Kramer, Karl J, Arakane, Yasuyuki, Zhu, Qingsong, Hogenkamp, David, Dixit, Radhika, Jiang, Haobo, Zou, Zhen, Marshall, Jeremy, Elpidina, Elena, Vinokurov, Konstantin, Oppert, Cris, Evans, Jay, Lu, Zhiqiang, Zhao, Picheng, Sumathipala, Niranji, Altincicek, Boran, Vilcinskas, Andreas, Williams, Michael, Hultmark, Dan, Hetru, Charles, Hauser, Frank, Cazzamali, Giuseppe, Williamson, Michael, Li, Bin, Tanaka, Yoshiaki, Predel, Reinhard, Neupert, Susanne, Schachtner, Joachim, Verleyen, Peter, Raible, Florian, Walden, Kimberly K O, Angeli, Sergio, Forêt, Sylvain, Schuetz, Stefan, Maleszka, Ryszard, Miller, Sherry C, Grossmann, Daniela, Richards, Stephen, Gibbs, Richard A, Weinstock, George M, Brown, Susan J, Denell, Robin, Beeman, Richard W, Gibbs, Richard, Bucher, Gregor, Friedrich, Markus, Grimmelikhuijzen, Cornelis J P, Klingler, Martin, Lorenzen, Marce, Roth, Siegfried, Schröder, Reinhard, Tautz, Diethard, Zdobnov, Evgeny M, Muzny, Donna, Attaway, Tony, Bell, Stephanie, Buhay, Christian J, Chandrabose, Mimi N, Chavez, Dean, Clerk-Blankenburg, Kerstin P, Cree, Andrew, Dao, Marvin, Davis, Clay, Chacko, Joseph, Dinh, Huyen, Dugan-Rocha, Shannon, Fowler, Gerald, Garner, Toni T, Garnes, Jeffrey, Gnirke, Andreas, Hawes, Alica, Hernandez, Judith, Hines, Sandra, Holder, Michael, Hume, Jennifer, Jhangiani, Shalini N, Joshi, Vandita, Khan, Ziad Mohid, Jackson, LaRonda, Kovar, Christie, Kowis, Andrea, Lee, Sandra, Lewis, Lora R, Margolis, Jon, Morgan, Margaret, Nazareth, Lynne V, Nguyen, Ngoc, Okwuonu, Geoffrey, Parker, David, Ruiz, San-Juana, Santibanez, Jireh, Savard, Joël, Scherer, Steven E, Schneider, Brian, Sodergren, Erica, Vattahil, Selina, Villasana, Donna, White, Courtney S, Wright, Rita, Park, Yoonseong, Lord, Jeff, Oppert, Brenda, Brown, Susan, Wang, Liangjiang, Weinstock, George, Liu, Yue, Worley, Kim, Elsik, Christine G, Reese, Justin T, Elhaik, Eran, Landan, Giddy, Graur, Dan, Arensburger, Peter, Atkinson, Peter, Beidler, Jim, Demuth, Jeffery P, Drury, Douglas W, Du, Yu-Zhou, Fujiwara, Haruhiko, Maselli, Vincenza, Osanai, Mizuko, Robertson, Hugh M, Tu, Zhijian, Wang, Jian-jun, Wang, Suzhi, Song, Henry, Zhang, Lan, Werner, Doreen, Stanke, Mario, Morgenstern, Burkhard, Solovyev, Victor, Kosarev, Peter, Brown, Garth, Chen, Hsiu-Chuan, Ermolaeva, Olga, Hlavina, Wratko, Kapustin, Yuri, Kiryutin, Boris, Kitts, Paul, Maglott, Donna, Pruitt, Kim, Sapojnikov, Victor, Souvorov, Alexandre, Mackey, Aaron J, Waterhouse, Robert M, Wyder, Stefan, Kriventseva, Evgenia V, Kadowaki, Tatsuhiko, Bork, Peer, Aranda, Manuel, Bao, Riyue, Beermann, Anke, Berns, Nicola, Bolognesi, Renata, Bonneton, François, Bopp, Daniel, Butts, Thomas, Chaumot, Arnaud, Denell, Robin E, Ferrier, David E K, Gordon, Cassondra M, Jindra, Marek, Lan, Que, Lattorff, H Michael G, Laudet, Vincent, von Levetsow, Cornelia, Liu, Zhenyi, Lutz, Rebekka, Lynch, Jeremy A, da Fonseca, Rodrigo Nunes, Posnien, Nico, Reuter, Rolf, Schinko, Johannes B, Schmitt, Christian, Schoppmeier, Michael, Shippy, Teresa D, Simonnet, Franck, Marques-Souza, Henrique, Tomoyasu, Yoshinori, Trauner, Jochen, Van der Zee, Maurijn, Vervoort, Michel, Wittkopp, Nadine, Wimmer, Ernst A, Yang, Xiaoyun, Jones, Andrew K, Sattelle, David B, Ebert, Paul R, Nelson, David, Scott, Jeffrey G, Muthukrishnan, Subbaratnam, Kramer, Karl J, Arakane, Yasuyuki, Zhu, Qingsong, Hogenkamp, David, Dixit, Radhika, Jiang, Haobo, Zou, Zhen, Marshall, Jeremy, Elpidina, Elena, Vinokurov, Konstantin, Oppert, Cris, Evans, Jay, Lu, Zhiqiang, Zhao, Picheng, Sumathipala, Niranji, Altincicek, Boran, Vilcinskas, Andreas, Williams, Michael, Hultmark, Dan, Hetru, Charles, Hauser, Frank, Cazzamali, Giuseppe, Williamson, Michael, Li, Bin, Tanaka, Yoshiaki, Predel, Reinhard, Neupert, Susanne, Schachtner, Joachim, Verleyen, Peter, Raible, Florian, Walden, Kimberly K O, Angeli, Sergio, Forêt, Sylvain, Schuetz, Stefan, Maleszka, Ryszard, Miller, Sherry C, and Grossmann, Daniela

Abstract

Tribolium castaneum is a representative of earth’s most numerous eukaryotic order, a powerful model organism for the study of generalized insect development, and also an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved an ability to interact with a diverse chemical environment as evidenced by large expansions in odorant and gustatory receptors, as well as p450 and other detoxification enzymes. Developmental patterns in Tribolium are more representative of other arthropods than those found in Drosophila, a fact represented in gene content and function. For one, Tribolium has retained more ancestral genes involved in cell-cell communication than Drosophila, and some are expressed in the growth zone crucial for axial elongation in short germ development. Systemic RNAi in T. castaneum appears to use mechanisms distinct from those found in C. elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control.

Published
2008

2. The genome of the model beetle and pest Tribolium castaneum.

Author

Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Beeman RW, Brown SJ, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, Richards S, Roth S, Schröder R, Tautz D, Zdobnov EM, Muzny D, Gibbs RA, Weinstock GM, Attaway T, Bell S, Buhay CJ, Chandrabose MN, Chavez D, Clerk-Blankenburg KP, Cree A, Dao M, Davis C, Chacko J, Dinh H, Dugan-Rocha S, Fowler G, Garner TT, Garnes J, Gnirke A, Hawes A, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Jackson L, Kovar C, Kowis A, Lee S, Lewis LR, Margolis J, Morgan M, Nazareth LV, Nguyen N, Okwuonu G, Parker D, Richards S, Ruiz SJ, Santibanez J, Savard J, Scherer SE, Schneider B, Sodergren E, Tautz D, Vattahil S, Villasana D, White CS, Wright R, Park Y, Beeman RW, Lord J, Oppert B, Lorenzen M, Brown S, Wang L, Savard J, Tautz D, Richards S, Weinstock G, Gibbs RA, Liu Y, Worley K, Weinstock G, Elsik CG, Reese JT, Elhaik E, Landan G, Graur D, Arensburger P, Atkinson P, Beeman RW, Beidler J, Brown SJ, Demuth JP, Drury DW, Du YZ, Fujiwara H, Lorenzen M, Maselli V, Osanai M, Park Y, Robertson HM, Tu Z, Wang JJ, Wang S, Richards S, Song H, Zhang L, Sodergren E, Werner D, Stanke M, Morgenstern B, Solovyev V, Kosarev P, Brown G, Chen HC, Ermolaeva O, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Maglott D, Pruitt K, Sapojnikov V, Souvorov A, Mackey AJ, Waterhouse RM, Wyder S, Zdobnov EM, Zdobnov EM, Wyder S, Kriventseva EV, Kadowaki T, Bork P, Aranda M, Bao R, Beermann A, Berns N, Bolognesi R, Bonneton F, Bopp D, Brown SJ, Bucher G, Butts T, Chaumot A, Denell RE, Ferrier DE, Friedrich M, Gordon CM, Jindra M, Klingler M, Lan Q, Lattorff HM, Laudet V, von Levetsow C, Liu Z, Lutz R, Lynch JA, da Fonseca RN, Posnien N, Reuter R, Roth S, Savard J, Schinko JB, Schmitt C, Schoppmeier M, Schröder R, Shippy TD, Simonnet F, Marques-Souza H, Tautz D, Tomoyasu Y, Trauner J, Van der Zee M, Vervoort M, Wittkopp N, Wimmer EA, Yang X, Jones AK, Sattelle DB, Ebert PR, Nelson D, Scott JG, Beeman RW, Muthukrishnan S, Kramer KJ, Arakane Y, Beeman RW, Zhu Q, Hogenkamp D, Dixit R, Oppert B, Jiang H, Zou Z, Marshall J, Elpidina E, Vinokurov K, Oppert C, Zou Z, Evans J, Lu Z, Zhao P, Sumathipala N, Altincicek B, Vilcinskas A, Williams M, Hultmark D, Hetru C, Jiang H, Grimmelikhuijzen CJ, Hauser F, Cazzamali G, Williamson M, Park Y, Li B, Tanaka Y, Predel R, Neupert S, Schachtner J, Verleyen P, Raible F, Bork P, Friedrich M, Walden KK, Robertson HM, Angeli S, Forêt S, Bucher G, Schuetz S, Maleszka R, Wimmer EA, Beeman RW, Lorenzen M, Tomoyasu Y, Miller SC, Grossmann D, and Bucher G

Subjects
Animals, Base Composition, Body Patterning genetics, Cytochrome P-450 Enzyme System genetics, DNA Transposable Elements genetics, Growth and Development genetics, Humans, Insecticides pharmacology, Neurotransmitter Agents genetics, Oogenesis genetics, Phylogeny, Proteome genetics, RNA Interference, Receptors, G-Protein-Coupled genetics, Receptors, Odorant genetics, Repetitive Sequences, Nucleic Acid genetics, Taste genetics, Telomere genetics, Tribolium classification, Tribolium embryology, Tribolium physiology, Vision, Ocular genetics, Genes, Insect genetics, Genome, Insect genetics, Tribolium genetics
Abstract

Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved the ability to interact with a diverse chemical environment, as shown by large expansions in odorant and gustatory receptors, as well as P450 and other detoxification enzymes. Development in Tribolium is more representative of other insects than is Drosophila, a fact reflected in gene content and function. For example, Tribolium has retained more ancestral genes involved in cell-cell communication than Drosophila, some being expressed in the growth zone crucial for axial elongation in short-germ development. Systemic RNA interference in T. castaneum functions differently from that in Caenorhabditis elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control.

Published
2008
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