50 results on '"von Dassow G"'
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2. Pelagic larval polyclads that practice macrophagous carnivory
- Author
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von Dassow G and Mendes C
- Subjects
Crustacean larvae ,Larva ,biology ,Benthos ,fungi ,Zoology ,Pelagic zone ,Plankton ,biology.organism_classification ,Hatchling ,DNA barcoding ,Predation - Abstract
We report evidence that hatchling polyclads of several genera feed in the plankton on large prey. These ciliated swimmers, despite apparently lacking means to concentrate food or even detect it at a distance, subdue and consume fast-moving active-swimming plankters such as crustacean larvae and copepods, or molluskan veligers. We describe feeding events in captivity using videomicroscopy, and identify several wild-caught predatory pelagic polyclad larvae to genus or species level by DNA barcoding. Remarkably, one of these types is identified unambiguously with a species previously observed as Müller’s larvae, which live as conventional planktotrophs on an inferred diet of small phytoflagellates. Therefore we conclude first that while so-called “direct-developing” polyclad flatworms may hatch with juvenile-like morphology, at least some of these are functionally larvae. Second, that some species of polyclad have at least a triphasic life cycle, with a first larval stage living in the plankton on primary producers followed by a second larval stage living in the plankton by macrophagous carnivory, before presumably settling to the benthos for adult life.
- Published
- 2021
3. Ghost Factors of Laboratory Carbonate Chemistry Are Haunting Our Experiments
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Galloway, A. W. E., primary, von Dassow, G., additional, Schram, J. B., additional, Klinger, T., additional, Hill, T. M., additional, Lowe, A. T., additional, Chan, F., additional, Yoshioka, R. M., additional, and Kroeker, K. J., additional
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- 2020
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4. Control of Drosophila endocycles by E2F and CRL4(CDT2)
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Zielke, N, Kim, K J, Tran, V, Shibutani, S T, Bravo, M J, Nagarajan, S, van Straaten, M, Woods, B, von Dassow, G, Rottig, C, Lehner, C F; https://orcid.org/0000-0003-0185-6049, Grewal, S S, Duronio, R J, Edgar, B A, Zielke, N, Kim, K J, Tran, V, Shibutani, S T, Bravo, M J, Nagarajan, S, van Straaten, M, Woods, B, von Dassow, G, Rottig, C, Lehner, C F; https://orcid.org/0000-0003-0185-6049, Grewal, S S, Duronio, R J, and Edgar, B A
- Abstract
Endocycles are variant cell cycles comprised of DNA synthesis (S)- and gap (G)-phases but lacking mitosis1,2. Such cycles facilitate post-mitotic growth in many invertebrate and plant cells, and are so ubiquitous that they may account for up to half the world’s biomass3,4. DNA replication in endocycling Drosophila cells is triggered by cyclin E/cyclin dependent kinase 2 (CYCE/CDK2), but this kinase must be inactivated during each G-phase to allow the assembly of pre-Replication Complexes (preRCs) for the next S-phase5,6. How CYCE/CDK2 is periodically silenced to allow re-replication has not been established. Here, using genetic tests in parallel with computational modelling, we show that the endocycles of Drosophila are driven by a molecular oscillator in which the E2F1 transcription factor promotes CycE expression and S-phase initiation, S-phase then activates the CRL4CDT2 ubiquitin ligase, and this in turn mediates the destruction of E2F1 (ref. 7). We propose that it is the transient loss of E2F1 during S phases that creates the window of low Cdk activity required for preRC formation. In support of this model overexpressed E2F1 accelerated endocycling, whereas a stabilized variant of E2F1 blocked endocycling by deregulating target genes, including CycE, as well as Cdk1 and mitotic cyclins. Moreover, we find that altering cell growth by changing nutrition or target of rapamycin (TOR) signalling impacts E2F1 translation, thereby making endocycle progression growth-dependent. Many of the regulatory interactions essential to this novel cell cycle oscillator are conserved in animals and plants1,2,8, indicating that elements of this mechanism act in most growth-dependent cell cycles.
- Published
- 2011
5. Regulation of dorsal-ventral patterning: the ventralizing effects of the novel Xenopus homeobox gene Vox
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Schmidt, J.E., primary, von Dassow, G., additional, and Kimelman, D., additional
- Published
- 1996
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6. How an actin network might cause fountain streaming and nuclear migration in the syncytial Drosophila embryo [published erratum appears in J Cell Biol 1995 Sep;130(5):1231-4]
- Author
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von Dassow, G., primary
- Published
- 1994
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7. Induction of the Xenopus organizer: expression and regulation of Xnot, a novel FGF and activin-regulated homeo box gene.
- Author
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von Dassow, G, primary, Schmidt, J E, additional, and Kimelman, D, additional
- Published
- 1993
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8. Testing models of cell cortex wave generation by Rho GTPases.
- Author
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Chomchai D, Leda M, Golding A, von Dassow G, Bement WM, and Goryachev AB
- Abstract
The Rho GTPases pattern the cell cortex in a variety of fundamental cell-morphogenetic processes including division, wound repair, and locomotion. It has recently become apparent that this patterning arises from the ability of the Rho GTPases to self-organize into static and migrating spots, contractile pulses, and propagating waves in cells from yeasts to mammals
1 . These self-organizing Rho GTPase patterns have been explained by a variety of theoretical models which require multiple interacting positive and negative feedback loops. However, it is often difficult, if not impossible, to discriminate between different models simply because the available experimental data do not simultaneously capture the dynamics of multiple molecular concentrations and biomechanical variables at fine spatial and temporal resolution. Specifically, most studies typically provide either the total Rho GTPase signal or the Rho GTPase activity as reported by various sensors, but not both. Therefore, it remains largely unknown how membrane accumulation of Rho GTPases (i.e., Rho membrane enrichment) is related to Rho activity. Here we dissect the dynamics of RhoA by simultaneously imaging both total RhoA and active RhoA in the regime of acute cortical excitability2 , characterized by pronounced waves of Rho activity and F-actin polymerization3-5 . We find that within nascent waves, accumulation of active RhoA precedes that of total RhoA, and we exploit this finding to distinguish between two popular theoretical models previously used to explain propagating cortical Rho waves.- Published
- 2024
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9. Patterning of the cell cortex by Rho GTPases.
- Author
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Bement WM, Goryachev AB, Miller AL, and von Dassow G
- Subjects
- Actins metabolism, Signal Transduction, Cell Movement, rac1 GTP-Binding Protein metabolism, rho GTP-Binding Proteins metabolism, Cytoskeleton metabolism
- Abstract
The Rho GTPases - RHOA, RAC1 and CDC42 - are small GTP binding proteins that regulate basic biological processes such as cell locomotion, cell division and morphogenesis by promoting cytoskeleton-based changes in the cell cortex. This regulation results from active (GTP-bound) Rho GTPases stimulating target proteins that, in turn, promote actin assembly and myosin 2-based contraction to organize the cortex. This basic regulatory scheme, well supported by in vitro studies, led to the natural assumption that Rho GTPases function in vivo in an essentially linear matter, with a given process being initiated by GTPase activation and terminated by GTPase inactivation. However, a growing body of evidence based on live cell imaging, modelling and experimental manipulation indicates that Rho GTPase activation and inactivation are often tightly coupled in space and time via signalling circuits and networks based on positive and negative feedback. In this Review, we present and discuss this evidence, and we address one of the fundamental consequences of coupled activation and inactivation: the ability of the Rho GTPases to self-organize, that is, direct their own transition from states of low order to states of high order. We discuss how Rho GTPase self-organization results in the formation of diverse spatiotemporal cortical patterns such as static clusters, oscillatory pulses, travelling wave trains and ring-like waves. Finally, we discuss the advantages of Rho GTPase self-organization and pattern formation for cell function., (© 2024. Springer Nature Limited.)
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- 2024
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10. Publisher Correction: Patterning of the cell cortex by Rho GTPases.
- Author
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Bement WM, Goryachev AB, Miller AL, and von Dassow G
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- 2024
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11. The hydrodynamics and kinematics of the appendicularian tail underpin peristaltic pumping.
- Author
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Hiebert TC, Gemmell BJ, von Dassow G, Conley KR, and Sutherland KR
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- Animals, Biomechanical Phenomena, Plankton, Swimming, Water, Tail, Hydrodynamics, Ecosystem
- Abstract
Planktonic organisms feed while suspended in water using various hydrodynamic pumping strategies. Appendicularians are a unique group of plankton that use their tail to pump water over mucous mesh filters to concentrate food particles. As ubiquitous and often abundant members of planktonic ecosystems, they play a major role in oceanic food webs. Yet, we lack a complete understanding of the fluid flow that underpins their filtration. Using high-speed, high-resolution video and micro particle image velocimetry, we describe the kinematics and hydrodynamics of the tail in Oikopleura dioica in filtering and free-swimming postures. We show that sinusoidal waves of the tail generate peristaltic pumping within the tail chamber with fluid moving parallel to the tail when filtering. We find that the tail contacts attachment points along the tail chamber during each beat cycle, serving to seal the tail chamber and drive pumping. When we tested how the pump performs across environmentally relevant temperatures, we found that the amplitude of the tail was invariant but tail beat frequency increased threefold across three temperature treatments (5°C, 15°C and 25°C). Investigation into this unique pumping mechanism gives insight into the ecological success of appendicularians and provides inspiration for novel pump designs.
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- 2023
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12. A versatile cortical pattern-forming circuit based on Rho, F-actin, Ect2, and RGA-3/4.
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Michaud A, Leda M, Swider ZT, Kim S, He J, Landino J, Valley JR, Huisken J, Goryachev AB, von Dassow G, and Bement WM
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- Actin Cytoskeleton metabolism, Animals, Cytokinesis, Oocytes, Xenopus, Actins metabolism, Cytoskeleton metabolism, GTPase-Activating Proteins metabolism, Proto-Oncogene Proteins metabolism, rho GTP-Binding Proteins metabolism
- Abstract
Many cells can generate complementary traveling waves of actin filaments (F-actin) and cytoskeletal regulators. This phenomenon, termed cortical excitability, results from coupled positive and negative feedback loops of cytoskeletal regulators. The nature of these feedback loops, however, remains poorly understood. We assessed the role of the Rho GAP RGA-3/4 in the cortical excitability that accompanies cytokinesis in both frog and starfish. RGA-3/4 localizes to the cytokinetic apparatus, "chases" Rho waves in an F-actin-dependent manner, and when coexpressed with the Rho GEF Ect2, is sufficient to convert the normally quiescent, immature Xenopus oocyte cortex into a dramatically excited state. Experiments and modeling show that changing the ratio of RGA-3/4 to Ect2 produces cortical behaviors ranging from pulses to complex waves of Rho activity. We conclude that RGA-3/4, Ect2, Rho, and F-actin form the core of a versatile circuit that drives a diverse range of cortical behaviors, and we demonstrate that the immature oocyte is a powerful model for characterizing these dynamics., (© 2022 Michaud et al.)
- Published
- 2022
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13. Cortical excitability and cell division.
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Michaud A, Swider ZT, Landino J, Leda M, Miller AL, von Dassow G, Goryachev AB, and Bement WM
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- Cell Division, Cytoplasm metabolism, Signal Transduction, Actins metabolism, Cytokinesis
- Abstract
As the interface between the cell and its environment, the cell cortex must be able to respond to a variety of external stimuli. This is made possible in part by cortical excitability, a behavior driven by coupled positive and negative feedback loops that generate propagating waves of actin assembly in the cell cortex. Cortical excitability is best known for promoting cell protrusion and allowing the interpretation of and response to chemoattractant gradients in migrating cells. It has recently become apparent, however, that cortical excitability is involved in the response of the cortex to internal signals from the cell-cycle regulatory machinery and the spindle during cell division. Two overlapping functions have been ascribed to cortical excitability in cell division: control of cell division plane placement, and amplification of the activity of the small GTPase Rho at the equatorial cortex during cytokinesis. Here, we propose that cortical excitability explains several important yet poorly understood features of signaling during cell division. We also consider the potential advantages that arise from the use of cortical excitability as a signaling mechanism to regulate cortical dynamics in cell division., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Published
- 2021
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14. Direct Observation of the Setular Web That Fuses Thoracopodal Setae of a Calanoid Copepod into a Collapsible Fan.
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von Dassow G and Emlet RB
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- Animals, Sensilla, Copepoda
- Published
- 2020
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15. Microinjection of oocytes and embryos with synthetic mRNA encoding molecular probes.
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von Dassow G, Valley J, and Robbins K
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- Animals, Sea Urchins genetics, Starfish genetics, Embryo, Nonmammalian cytology, Embryo, Nonmammalian physiology, Microinjections methods, Molecular Probes administration & dosage, Oocytes cytology, RNA, Messenger administration & dosage
- Abstract
We describe methods and techniques for introduction of molecular probes in the form of synthetic mRNA by rapid repetitive microinjection into oocytes or early embryos of echinoderms and various invertebrates. Construct assembly is followed by standard kit-based in vitro mRNA synthesis, with slight modifications to optimize expression and clean-up. Variations of a basic microinjection procedures are detailed for echinoderms: starfish oocytes (Patiria miniata or other species), purple urchin (Strongylocentrotus purpuratus) and sand dollar (Dendraster excentricus) zygotes, with notes included for other invertebrate eggs and embryos as well., (© 2019 Elsevier Inc. All rights reserved.)
- Published
- 2019
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16. The trochoblasts in the pilidium larva break an ancient spiralian constraint to enable continuous larval growth and maximally indirect development.
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von Dassow G and Maslakova SA
- Abstract
Background: Nemertean embryos undergo equal spiral cleavage, and prior fate-mapping studies showed that some also exhibit key aspects of spiralian lineage-based fate specification, including specification of the primary trochoblasts, which differentiate early as the core of the prototroch of the spiralian trochophore larva. Yet it remains unclear how the nemertean pilidium larva, a long-lived planktotroph that grows substantially as it builds a juvenile body from isolated rudiments, develops within the constraints of spiral cleavage., Results: We marked single cells in embryos of the pilidiophoran Maculaura alaskensis to show that primary, secondary, and accessory trochoblasts, cells that would make the prototroch in conventional spiralian trochophores (1q
2 , 1q12 , and some descendants of 2q), fully account for the pilidium's primary ciliary band, but without undergoing early cleavage arrest. Instead, the primary ciliary band consists of many small, albeit terminally differentiated, cells. The trochoblasts also give rise to niches of indefinitely proliferative cells ("axils") that sustain continuous growth of the larval body, including new ciliated band. Several of the imaginal rudiments that form the juvenile body arise from the axils: in particular, we show that cephalic imaginal disks originate from 1a2 and 1b12 and that trunk imaginal disks likely originate from 2d., Conclusions: The pilidium exhibits a familiar relation between identified blastomeres and the primary ciliated band, but the manner in which these cells form this organ differs fundamentally from the way equivalent cells construct the trochophore's prototroch. Also, the establishment, by some progeny of the putative trochoblasts, of indeterminate stem cell populations that give rise to juvenile rudiments, as opposed to an early cleavage arrest, implies a radical alteration in their developmental program. This transition may have been essential to the evolution of a maximally indirect developing larval form-the pilidium-among nemerteans.- Published
- 2017
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17. How to make a static cytokinetic furrow out of traveling excitable waves.
- Author
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Goryachev AB, Leda M, Miller AL, von Dassow G, and Bement WM
- Subjects
- Actins metabolism, Animals, Humans, rho GTP-Binding Proteins metabolism, Cytokinesis
- Abstract
Emergence of the cytokinetic Rho zone that orchestrates formation and ingression of the cleavage furrow had been explained previously via microtubule-dependent cortical concentration of Ect2, a guanine nucleotide exchange factor for Rho. The results of a recent publication now demonstrate that, en route from resting cortex to fully established furrow, there lies a regime of cortical excitability in which Rho activity and F-actin play the roles of the prototypical activator and inhibitor, respectively. This cortical excitability is manifest as dramatic traveling waves on the cortex of oocytes and embryos of frogs and starfish. These waves are initiated by autocatalytic activation of Rho at the wave front and extinguished by F-actin-dependent inhibition at their back. It is still unclear how propagating excitable Rho-actin waves give rise to the stable co-existence of Rho activity and F-actin density in the static cleavage furrow during cytokinesis. It is possible that some central spindle-associated signaling molecule simply turns off the inhibition of Rho activity by F-actin. However, mathematical modeling suggests a distinct scenario in which local "re-wiring" of the Rho-actin coupling in the furrow is no longer necessary. Instead, the model predicts that the continuously rising level of Ect2 produces in the furrow a qualitatively new stable steady state that replaces excitability and brings about the stable co-existence of high Rho activity and dense F-actin despite the continuing inhibition of Rho by F-actin.
- Published
- 2016
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18. Oocyte Meiotic Spindle Assembly and Function.
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Severson AF, von Dassow G, and Bowerman B
- Subjects
- Animals, Caenorhabditis elegans, Centrosome metabolism, Centrosome ultrastructure, Chromosomes metabolism, Female, Kinetochores physiology, Microtubules metabolism, Microtubules ultrastructure, Spindle Apparatus ultrastructure, Meiosis, Oocytes cytology, Oocytes physiology, Spindle Apparatus physiology
- Abstract
Gametogenesis in animal oocytes reduces the diploid genome content of germline precursors to a haploid state in gametes by discarding ¾ of the duplicated chromosomes through a sequence of two meiotic cell divisions called meiosis I and II. The assembly of the microtubule-based spindle structure that mediates this reduction in genome content remains poorly understood compared to our knowledge of mitotic spindle assembly and function. In this review, we consider the diversity of oocyte meiotic spindle assembly and structure across animal phylogeny, review recent advances in our understanding of how animal oocytes assemble spindles in the absence of the centriole-based microtubule-organizing centers that dominate mitotic spindle assembly, and discuss different models for how chromosomes are captured and moved to achieve chromosome segregation during oocyte meiotic cell division., (© 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
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19. Activator-inhibitor coupling between Rho signalling and actin assembly makes the cell cortex an excitable medium.
- Author
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Bement WM, Leda M, Moe AM, Kita AM, Larson ME, Golding AE, Pfeuti C, Su KC, Miller AL, Goryachev AB, and von Dassow G
- Subjects
- Anaphase, Animals, CDC2 Protein Kinase metabolism, Centrosome metabolism, Cytoplasm metabolism, Embryo, Nonmammalian cytology, Embryo, Nonmammalian metabolism, Female, Guanine Nucleotide Exchange Factors metabolism, Kinetics, Microscopy, Confocal, Microtubules metabolism, Oocytes metabolism, Polymerization, Spindle Apparatus metabolism, Starfish, Time-Lapse Imaging methods, Xenopus laevis, Actins metabolism, Cytokinesis, Signal Transduction, rho GTP-Binding Proteins metabolism
- Abstract
Animal cell cytokinesis results from patterned activation of the small GTPase Rho, which directs assembly of actomyosin in the equatorial cortex. Cytokinesis is restricted to a portion of the cell cycle following anaphase onset in which the cortex is responsive to signals from the spindle. We show that shortly after anaphase onset oocytes and embryonic cells of frogs and echinoderms exhibit cortical waves of Rho activity and F-actin polymerization. The waves are modulated by cyclin-dependent kinase 1 (Cdk1) activity and require the Rho GEF (guanine nucleotide exchange factor), Ect2. Surprisingly, during wave propagation, although Rho activity elicits F-actin assembly, F-actin subsequently inactivates Rho. Experimental and modelling results show that waves represent excitable dynamics of a reaction-diffusion system with Rho as the activator and F-actin the inhibitor. We propose that cortical excitability explains fundamental features of cytokinesis including its cell cycle regulation.
- Published
- 2015
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20. A comparative analysis of spindle morphometrics across metazoans.
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Crowder ME, Strzelecka M, Wilbur JD, Good MC, von Dassow G, and Heald R
- Subjects
- Animals, Female, Male, Chordata, Embryo, Mammalian cytology, Embryo, Nonmammalian cytology, Invertebrates, Spindle Apparatus
- Abstract
Cell division in all eukaryotes depends on function of the spindle, a microtubule-based structure that segregates chromosomes to generate daughter cells in mitosis or haploid gametes in meiosis. Spindle size adapts to changes in cell size and shape, which vary dramatically across species and within a multicellular organism, but the nature of scaling events and their underlying mechanisms are poorly understood. Cell size variations are most pronounced in early animal development, as egg diameters range from tens of microns up to millimeters across animal phyla, and decrease several orders of magnitude during rapid reductive divisions. During early embryogenesis in the model organisms X. laevis and C. elegans, the spindle scales with cell size [1, 2], a phenomenon regulated by molecules that modulate microtubule dynamics [3-6], as well as by limiting cytoplasmic volume [7, 8]. However, it is not known to what extent spindle scaling is conserved across organisms and among different cell types. Here we show that in a range of metazoan phyla, mitotic spindle length decreased with cell size across an ∼30-fold difference in zygote size. Maximum spindle length varied, but linear spindle scaling occurred similarly in all species once embryonic cell diameter reduced to 140 μm. In contrast, we find that the female meiotic spindle does not scale as closely to egg size, adopting a more uniform size across species that most likely reflects its specialized function. Our analysis reveals that spindle morphometrics change abruptly, within one cell cycle, at the transition from meiosis to mitosis in most animals., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
- Published
- 2015
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21. An astral simulacrum of the central spindle accounts for normal, spindle-less, and anucleate cytokinesis in echinoderm embryos.
- Author
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Su KC, Bement WM, Petronczki M, and von Dassow G
- Subjects
- Animals, Cell Cycle Proteins metabolism, Cell Nucleus physiology, Cytoskeleton metabolism, Green Fluorescent Proteins metabolism, Guanine Nucleotide Exchange Factors metabolism, Humans, Microtubule-Associated Proteins metabolism, Phosphoproteins metabolism, Cytokinesis, Embryo, Nonmammalian cytology, Spindle Apparatus metabolism, Strongylocentrotus purpuratus cytology
- Abstract
Cytokinesis in animal cells depends on spindle-derived spatial cues that culminate in Rho activation, and thereby actomyosin assembly, in a narrow equatorial band. Although the nature, origin, and variety of such cues have long been obscure, one component is certainly the Rho activator Ect2. Here we describe the behavior and function of Ect2 in echinoderm embryos, showing that Ect2 migrates from spindle midzone to astral microtubules in anaphase and that Ect2 shapes the pattern of Rho activation in incipient furrows. Our key finding is that Ect2 and its binding partner Cyk4 accumulate not only at normal furrows, but also at furrows that form in the absence of associated spindle, midzone, or chromosomes. In all these cases, the cell assembles essentially the same cytokinetic signaling ensemble—opposed astral microtubules decorated with Ect2 and Cyk4. We conclude that if multiple signals contribute to furrow induction in echinoderm embryos, they likely converge on the same signaling ensemble on an analogous cytoskeletal scaffold., (© 2014 Su et al. This article is distributed by The American Society for Cell Biology under license from the author(s). Two months after publication it is available to the public under an Attribution–Noncommercial–Share Alike 3.0 Unported Creative Commons License (http://creativecommons.org/licenses/by-nc-sa/3.0).)
- Published
- 2014
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22. How the pilidium larva grows.
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Bird AM, von Dassow G, and Maslakova SA
- Abstract
Background: For animal cells, ciliation and mitosis appear to be mutually exclusive. While uniciliated cells can resorb their cilium to undergo mitosis, multiciliated cells apparently can never divide again. Nevertheless, many multiciliated epithelia in animals must grow or undergo renewal. The larval epidermis in a number of marine invertebrate larvae, such as those of annelids, mollusks and nemerteans, consists wholly or in part of multiciliated epithelial cells, generally organized into a swimming and feeding apparatus. Many of these larvae must grow substantially to reach metamorphosis. Do individual epithelial cells simply expand to accommodate an increase in body size, or are there dividing cells amongst them? If some cells divide, where are they located?, Results: We show that the nemertean pilidium larva, which is almost entirely composed of multiciliated cells, retains pockets of proliferative cells in certain regions of the body. Most of these are found near the larval ciliated band in the recesses between the larval lobes and lappets, which we refer to as axils. Cells in the axils contribute both to the growing larval body and to the imaginal discs that form the juvenile worm inside the pilidium., Conclusions: Our findings not only explain how the almost-entirely multiciliated pilidium can grow, but also demonstrate direct coupling of larval and juvenile growth in a maximally-indirect life history.
- Published
- 2014
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23. Single cell pattern formation and transient cytoskeletal arrays.
- Author
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Bement WM and von Dassow G
- Subjects
- Actin Cytoskeleton metabolism, Animals, Cell Shape, Cytokinesis, Cytoskeleton chemistry, Cytoskeleton genetics, Humans, Cytoskeleton metabolism
- Abstract
A major goal of developmental biology is to explain the emergence of pattern in cell layers, tissues and organs. Developmental biologists now accept that reaction diffusion-based mechanisms are broadly employed in developing organisms to direct pattern formation. Here we briefly consider these mechanisms and then apply some of the concepts derived from them to several processes that occur in single cells: wound repair, yeast budding, and cytokinesis. Two conclusions emerge from this analysis: first, there is considerable overlap at the level of general mechanisms between developmental and single cell pattern formation; second, dynamic structures based on the actin cytoskeleton may be far more ordered than is generally recognized., (Copyright © 2013 Elsevier Ltd. All rights reserved.)
- Published
- 2014
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24. An invertebrate embryologist's guide to routine processing of confocal images.
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von Dassow G
- Subjects
- Animals, Bivalvia cytology, Bivalvia physiology, Embryo, Nonmammalian cytology, Embryo, Nonmammalian physiology, Microscopy, Confocal methods, Software, Image Processing, Computer-Assisted
- Abstract
It is almost impossible to use a confocal microscope without encountering the need to transform the raw data through image processing. Adherence to a set of straightforward guidelines will help ensure that image manipulations are both credible and repeatable. Meanwhile, attention to optimal data collection parameters will greatly simplify image processing, not only for convenience but for quality and credibility as well. Here I describe how to conduct routine confocal image processing tasks, including creating 3D animations or stereo images, false coloring or merging channels, background suppression, and compressing movie files for display.
- Published
- 2014
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25. How the pilidium larva feeds.
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von Dassow G, Emlet RB, and Maslakova SA
- Abstract
Introduction: The nemertean pilidium is a long-lived feeding larva unique to the life cycle of a single monophyletic group, the Pilidiophora, which is characterized by this innovation. That the pilidium feeds on small planktonic unicells seems clear; how it does so is unknown and not readily inferred, because it shares little morphological similarity with other planktotrophic larvae., Results: Using high-speed video of trapped lab-reared pilidia of Micrura alaskensis, we documented a multi-stage feeding mechanism. First, the external ciliation of the pilidium creates a swimming and feeding current which carries suspended prey past the primary ciliated band spanning the posterior margins of the larval body. Next, the larva detects prey that pass within reach, then conducts rapid and coordinated deformations of the larval body to re-direct passing cells and surrounding water into a vestibular space between the lappets, isolated from external currents but not quite inside the larva. Once a prey cell is thus captured, internal ciliary bands arranged within this vestibule prevent prey escape. Finally, captured cells are transported by currents within a buccal funnel toward the stomach entrance. Remarkably, we observed that the prey of choice - various cultured cryptomonads - attempt to escape their fate., Conclusions: The feeding mechanism deployed by the pilidium larva coordinates local control of cilia-driven water transport with sensorimotor behavior, in a manner clearly distinct from any other well-studied larval feeding mechanisms. We hypothesize that the pilidium's feeding strategy may be adapted to counter escape responses such as those deployed by cryptomonads, and speculate that similar needs may underlie convergences among disparate planktotrophic larval forms.
- Published
- 2013
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26. A non-feeding pilidium with apparent prototroch and telotroch.
- Author
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Maslakova SA and von Dassow G
- Subjects
- Animals, Base Sequence, DNA Barcoding, Taxonomic, Electron Transport Complex IV genetics, Invertebrates classification, Larva anatomy & histology, Larva physiology, Molecular Sequence Data, Oregon, Pacific Ocean, Sequence Analysis, DNA, Species Specificity, Biological Evolution, Invertebrates anatomy & histology, Invertebrates physiology, Metamorphosis, Biological physiology, Plankton
- Abstract
The nemertean pilidium larva is a long-lived planktotrophic form which is challenging to homologize to other invertebrate larval forms. Here we report a reduced, lecithotrophic pilidium which superficially resembles a trochophore. We document the pilidium-like catastrophic metamorphosis of this larva, including devouring of the larval body. Sequences of COI and 16S rRNA show that this larva belongs to an undescribed lineiform species. This novel larval form highlights the long-standing question, is the trochophore a conserved larval ground-plan or a functional design arrived at by convergence?, (Copyright © 2012 Wiley Periodicals, Inc.)
- Published
- 2012
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27. Identification of small molecule inhibitors of cytokinesis and single cell wound repair.
- Author
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Clark AG, Sider JR, Verbrugghe K, Fenteany G, von Dassow G, and Bement WM
- Subjects
- Animals, Cells, Cultured, Oocytes cytology, Sea Urchins cytology, Sea Urchins metabolism, Xenopus laevis, Oocytes metabolism, Wound Healing drug effects
- Abstract
Screening of small molecule libraries offers the potential to identify compounds that inhibit specific biological processes and, ultimately, to identify macromolecules that are important players in such processes. To date, however, most screens of small molecule libraries have focused on identification of compounds that inhibit known proteins or particular steps in a given process, and have emphasized automated primary screens. Here we have used "low tech" in vivo primary screens to identify small molecules that inhibit both cytokinesis and single cell wound repair, two complex cellular processes that possess many common features. The "diversity set", an ordered array of 1990 compounds available from the National Cancer Institute, was screened in parallel to identify compounds that inhibit cytokinesis in Dendraster excentricus (sand dollar) embryos and single cell wound repair in Xenopus laevis (frog) oocytes. Two small molecules were thus identified: Sph1 and Sph2. Sph1 reduces Rho activation in wound repair and suppresses formation of the spindle midzone during cytokinesis. Sph2 also reduces Rho activation in wound repair and may inhibit cytokinesis by blocking membrane fusion. The results identify two small molecules of interest for analysis of wound repair and cytokinesis, reveal that these processes are more similar than often realized and reveal the potential power of low tech screens of small molecule libraries for analysis of complex cellular processe., (Copyright © 2012 Wiley Periodicals, Inc.)
- Published
- 2012
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28. A Rho GTPase signal treadmill backs a contractile array.
- Author
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Burkel BM, Benink HA, Vaughan EM, von Dassow G, and Bement WM
- Subjects
- Actins metabolism, Animals, Behavior, Animal, Enzyme Activation, Oocytes, Xenopus laevis, Muscle Contraction, rho GTP-Binding Proteins metabolism
- Abstract
Video Abstract: Contractile arrays of actin filaments (F-actin) and myosin-2 power diverse biological processes. Contractile array formation is stimulated by the Rho GTPases Rho and Cdc42; after assembly, array movement is thought to result from contraction itself. Contractile array movement and GTPase activity were analyzed during cellular wound repair, in which arrays close in association with zones of Rho and Cdc42 activity. Remarkably, contraction suppression prevents translocation of F-actin and myosin-2 without preventing array or zone closure. Closure is driven by an underlying "signal treadmill" in which the GTPases are preferentially activated at the leading edges and preferentially lost from the trailing edges of their zones. Treadmill organization requires myosin-2-powered contraction and F-actin turnover. Thus, directional gradients in Rho GTPase turnover impart directional information to contractile arrays, and proper functioning of these gradients is dependent on both contraction and F-actin turnover., (Copyright © 2012 Elsevier Inc. All rights reserved.)
- Published
- 2012
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29. Control of Drosophila endocycles by E2F and CRL4(CDT2).
- Author
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Zielke N, Kim KJ, Tran V, Shibutani ST, Bravo MJ, Nagarajan S, van Straaten M, Woods B, von Dassow G, Rottig C, Lehner CF, Grewal SS, Duronio RJ, and Edgar BA
- Subjects
- Animals, Drosophila melanogaster growth & development, Drosophila melanogaster metabolism, Female, Male, S Phase physiology, Salivary Glands cytology, Transcription Factors, Ubiquitin-Protein Ligase Complexes, Cell Cycle physiology, Drosophila Proteins metabolism, Drosophila melanogaster cytology, Drosophila melanogaster enzymology, E2F Transcription Factors metabolism, Ubiquitin-Protein Ligases metabolism
- Abstract
Endocycles are variant cell cycles comprised of DNA synthesis (S)- and gap (G)-phases but lacking mitosis. Such cycles facilitate post-mitotic growth in many invertebrate and plant cells, and are so ubiquitous that they may account for up to half the world's biomass. DNA replication in endocycling Drosophila cells is triggered by cyclin E/cyclin dependent kinase 2 (CYCE/CDK2), but this kinase must be inactivated during each G-phase to allow the assembly of pre-Replication Complexes (preRCs) for the next S-phase. How CYCE/CDK2 is periodically silenced to allow re-replication has not been established. Here, using genetic tests in parallel with computational modelling, we show that the endocycles of Drosophila are driven by a molecular oscillator in which the E2F1 transcription factor promotes CycE expression and S-phase initiation, S-phase then activates the CRL4(CDT2) ubiquitin ligase, and this in turn mediates the destruction of E2F1 (ref. 7). We propose that it is the transient loss of E2F1 during S phases that creates the window of low Cdk activity required for preRC formation. In support of this model overexpressed E2F1 accelerated endocycling, whereas a stabilized variant of E2F1 blocked endocycling by deregulating target genes, including CycE, as well as Cdk1 and mitotic cyclins. Moreover, we find that altering cell growth by changing nutrition or target of rapamycin (TOR) signalling impacts E2F1 translation, thereby making endocycle progression growth-dependent. Many of the regulatory interactions essential to this novel cell cycle oscillator are conserved in animals and plants, indicating that elements of this mechanism act in most growth-dependent cell cycles.
- Published
- 2011
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30. Action at a distance during cytokinesis.
- Author
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von Dassow G, Verbrugghe KJ, Miller AL, Sider JR, and Bement WM
- Subjects
- Animals, Centrosome drug effects, Diffusion, Embryo, Nonmammalian physiology, Enzyme Activation, Histone Deacetylase Inhibitors pharmacology, Hydroxamic Acids pharmacology, Luminescent Proteins metabolism, Microinjections, Microscopy, Confocal, Microtubules drug effects, Nocodazole pharmacology, Protein Transport, Recombinant Fusion Proteins metabolism, Spindle Apparatus drug effects, Strongylocentrotus purpuratus embryology, Time Factors, Tubulin Modulators pharmacology, Xenopus laevis embryology, rho GTP-Binding Proteins metabolism, Centrosome physiology, Cytokinesis drug effects, Metaphase, Microtubules physiology, Signal Transduction drug effects, Spindle Apparatus physiology
- Abstract
Animal cells decide where to build the cytokinetic apparatus by sensing the position of the mitotic spindle. Reflecting a long-standing presumption that a furrow-inducing stimulus travels from spindle to cortex via microtubules, debate continues about which microtubules, and in what geometry, are essential for accurate cytokinesis. We used live imaging in urchin and frog embryos to evaluate the relationship between microtubule organization and cytokinetic furrow position. In normal cells, the cytokinetic apparatus forms in a region of lower cortical microtubule density. Remarkably, cells depleted of astral microtubules conduct accurate, complete cytokinesis. Conversely, in anucleate cells, asters alone can support furrow induction without a spindle, but only when sufficiently separated. Ablation of a single centrosome displaces furrows away from the remaining centrosome; ablation of both centrosomes causes broad, inefficient furrowing. We conclude that the asters confer accuracy and precision to a primary furrow-inducing signal that can reach the cell surface from the spindle without transport on microtubules.
- Published
- 2009
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31. Unusual development of the mitraria larva in the polychaete Owenia collaris.
- Author
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Smart TI and Von Dassow G
- Subjects
- Animals, Larva anatomy & histology, Larva cytology, Larva growth & development, Larva ultrastructure, Microscopy, Microscopy, Electron, Scanning, Microscopy, Fluorescence, Polychaeta cytology, Polychaeta ultrastructure, Polychaeta anatomy & histology, Polychaeta growth & development
- Abstract
Despite the wide variety of larval forms among polychaetes, most are clearly derived from the canonical spiralian trochophore. Within the genus Owenia (family Oweniidae), however, the mitraria larva lacks the characteristic ciliary bands of the trochophore, and those it has are monociliated, typically a deuterostome characteristic. Adult Owenia spp. also possess a monociliated epidermis and deuterostome-like nephridia. This study is the first detailed account of early embryology for any member of the Oweniidae. Light, confocal, and scanning electron microscopy were used to investigate organogenesis from fertilization through metamorphosis in Owenia collaris. Equal spiral cleavage yields an embryo with an unusually large blastocoel for a spiralian. The embryo undergoes gastrulation by invagination, and begins swimming 24 h after fertilization. Three important events deviate markedly from stereotypical polychaete embryogenesis. First, at the 8-cell stage the micromeres are larger than the macromeres, as in nemerteans. Second, the blastopore becomes the anus, as in some deuterostomes, while the stomodeum may form secondarily. Third, the cells that would form the prototroch in a canonical spiralian trochophore (1q(2) descendants) never undergo cleavage arrest, and the primary ciliated band of the mitraria never contains large, multiciliated cells. The mitraria larva thus represents a mixture of protostome and deuterostome developmental traits, suggesting that spiralian development is not so rigidly constrained as it might appear.
- Published
- 2009
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32. Concurrent cues for cytokinetic furrow induction in animal cells.
- Author
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von Dassow G
- Subjects
- Animals, Cytoskeleton physiology, Myosins metabolism, rho GTP-Binding Proteins metabolism, Cell Physiological Phenomena physiology, Cytokinesis physiology, Microtubules physiology, Mitosis physiology, Spindle Apparatus physiology
- Abstract
Animal cells are deformable, yet live together bound into tissues. Consequently, physical perturbations imposed by neighbors threaten to disrupt the spatial coordination of cell cleavage with chromosome segregation during mitosis. Emerging evidence demonstrates that animal cells integrate multiple positional cues during cleavage-furrow induction, perhaps to facilitate error correction. Classical work indicated that the asters provide the stimulus for furrow induction, but recent results implicate the central spindle at least as much. Similarly, although classical work concluded that the stimulus occurs at the cell equator, new evidence shows that asters modulate cortical contractility outside the equator as well. Meanwhile, a newly revealed distinction between stable and dynamic astral microtubules suggests that these subsets might have complementary effects on furrow induction.
- Published
- 2009
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33. Stable and dynamic microtubules coordinately shape the myosin activation zone during cytokinetic furrow formation.
- Author
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Foe VE and von Dassow G
- Subjects
- Anaphase physiology, Animals, Microscopy, Confocal, Microtubules ultrastructure, Myosin Light Chains metabolism, Phosphorylation, Phosphoserine metabolism, Zygote physiology, Zygote ultrastructure, Cytokinesis physiology, Microtubules physiology, Myosin Type II physiology, Myosins metabolism, Sea Urchins physiology, Strongylocentrotus purpuratus physiology
- Abstract
The cytokinetic furrow arises from spatial and temporal regulation of cortical contractility. To test the role microtubules play in furrow specification, we studied myosin II activation in echinoderm zygotes by assessing serine19-phosphorylated regulatory light chain (pRLC) localization after precisely timed drug treatments. Cortical pRLC was globally depressed before cytokinesis, then elevated only at the equator. We implicated cell cycle biochemistry (not microtubules) in pRLC depression, and differential microtubule stability in localizing the subsequent myosin activation. With no microtubules, pRLC accumulation occurred globally instead of equatorially, and loss of just dynamic microtubules increased equatorial pRLC recruitment. Nocodazole treatment revealed a population of stable astral microtubules that formed during anaphase; among these, those aimed toward the equator grew longer, and their tips coincided with cortical pRLC accumulation. Shrinking the mitotic apparatus with colchicine revealed pRLC suppression near dynamic microtubule arrays. We conclude that opposite effects of stable versus dynamic microtubules focuses myosin activation to the cell equator during cytokinesis.
- Published
- 2008
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- View/download PDF
34. Control of the cytokinetic apparatus by flux of the Rho GTPases.
- Author
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Miller AL, von Dassow G, and Bement WM
- Subjects
- Animals, Xenopus, cdc42 GTP-Binding Protein metabolism, Cytokinesis, Models, Biological, rho GTP-Binding Proteins metabolism
- Abstract
Cytokinesis in animal cells is powered by the cytokinetic apparatus, a ring of filamentous actin and myosin-2 that underlies the plasma membrane and closes between the separating chromosomes. Formation of the cytokinetic apparatus is at least partially dependent on the small GTPase, Rho. Similar to other small GTPases, Rho cycles between the active (GTP-bound) and inactive (GDP-bound) states. Because of this switch-like behaviour, Rho and other members of the Rho GTPase family, such as Rac and Cdc42, have long been thought to work in a manner such that their activation and inactivation are not tightly coupled. That is, a given Rho-dependent event, such as cytokinesis, has been thought to be initiated by activation of Rho, and then, many minutes later, terminated by inactivation of Rho. Here we discuss evidence suggesting that in fact Rho undergoes rapid movement through the GTPase cycle throughout the entire process of cytokinesis, and that this cycling is necessary for proper cytokinetic apparatus function.
- Published
- 2008
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35. Cytokinetic furrowing in toroidal, binucleate and anucleate cells in C. elegans embryos.
- Author
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Baruni JK, Munro EM, and von Dassow G
- Subjects
- Animals, Caenorhabditis elegans genetics, Caenorhabditis elegans Proteins antagonists & inhibitors, Caenorhabditis elegans Proteins genetics, Caenorhabditis elegans Proteins physiology, Cell Fusion, Cell Nucleus physiology, Cell Nucleus ultrastructure, Centrosome physiology, Centrosome ultrastructure, Green Fluorescent Proteins metabolism, Kinesins antagonists & inhibitors, Kinesins genetics, Kinesins physiology, Lasers, Microtubule-Associated Proteins antagonists & inhibitors, Microtubule-Associated Proteins genetics, Microtubule-Associated Proteins physiology, Microtubules physiology, Microtubules ultrastructure, Myosins physiology, RNA Interference, Recombinant Fusion Proteins metabolism, Spindle Apparatus physiology, Spindle Apparatus ultrastructure, Caenorhabditis elegans cytology, Caenorhabditis elegans embryology, Cytokinesis physiology
- Abstract
Classical experimental studies on echinoderm zygotes concluded that the juxtaposition of two astral microtubule arrays localizes the stimulus for cytokinetic furrowing. However, recent experimental and genetic studies in Caenorhabditis elegans, Drosophila and mammalian cultured cells implicate microtubules of the central spindle, and regulatory proteins associated with this structure, suggesting that the essential conditions for furrow induction may differ from one animal cell to another. We used micromanipulation and laser microsurgery to create, in three ways, the juxtaposition of astral microtubules in C. elegans embryonic cells. In toroidal cells we observe that furrows initiate both where astral microtubule arrays are juxtaposed, and where the cortex most closely approaches the central spindle. We find that binucleate cells successfully furrow not only across the spindles, but also between unconnected spindle poles. Finally, we find that anucleate cells containing only a pair of centrosomes nevertheless attempt to cleave. Therefore, in C. elegans embryonic cells, as in echinoderms, juxtaposition of two asters suffices to induce furrowing, and neither the chromatin nor the physical structure of the central spindle are indispensable for furrow initiation. However, furrows that cross a central spindle are more likely to complete than those that do not.
- Published
- 2008
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- View/download PDF
36. The kinesin-8 motor Kif18A suppresses kinetochore movements to control mitotic chromosome alignment.
- Author
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Stumpff J, von Dassow G, Wagenbach M, Asbury C, and Wordeman L
- Subjects
- Anaphase, Cell Polarity, HeLa Cells, Humans, Microtubules metabolism, Models, Biological, Protein Transport, Spindle Apparatus metabolism, Chromosome Positioning, Chromosomes, Human metabolism, Kinesins metabolism, Kinetochores metabolism, Mitosis
- Abstract
During vertebrate cell division, chromosomes oscillate with periods of smooth motion interrupted by abrupt reversals in direction. These oscillations must be spatially constrained in order to align and segregate chromosomes with high fidelity, but the molecular mechanism for this activity is uncertain. We report here that the human kinesin-8 Kif18A has a primary role in the control of chromosome oscillations. Kif18A accumulates as a gradient on kinetochore microtubules in a manner dependent on its motor activity. Quantitative analyses of kinetochore movements reveal that Kif18A reduces the amplitude of preanaphase oscillations and slows poleward movement during anaphase. Thus, the microtubule-depolymerizing kinesin Kif18A has the unexpected function of suppressing chromosome movements. Based on these findings, we propose a molecular model in which Kif18A regulates kinetochore microtubule dynamics to control mitotic chromosome positioning.
- Published
- 2008
- Full Text
- View/download PDF
37. MCAK facilitates chromosome movement by promoting kinetochore microtubule turnover.
- Author
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Wordeman L, Wagenbach M, and von Dassow G
- Subjects
- Animals, Aurora Kinases, CHO Cells, Cricetinae, Cricetulus, HeLa Cells, Humans, Movement, Protein Serine-Threonine Kinases antagonists & inhibitors, Chromosomes, Human metabolism, Kinesins metabolism, Kinetochores metabolism, Microtubules metabolism
- Abstract
Mitotic centromere-associated kinesin (MCAK)/Kif2C is the most potent microtubule (MT)-destabilizing enzyme identified thus far. However, MCAK's function at the centromere has remained mechanistically elusive because of interference from cytoplasmic MCAK's global regulation of MT dynamics. In this study, we present MCAK chimeras and mutants designed to target centromere-associated MCAK for mechanistic analysis. Live imaging reveals that depletion of centromere-associated MCAK considerably decreases the directional coordination between sister kinetochores. Sister centromere directional antagonism results in decreased movement speed and increased tension. Sister centromeres appear unable to detach from kinetochore MTs efficiently in response to directional switching cues during oscillatory movement. These effects are reversed by anchoring ectopic MCAK to the centromere. We propose that MCAK increases the turnover of kinetochore MTs at all centromeres to coordinate directional switching between sister centromeres and facilitate smooth translocation. This may contribute to error correction during chromosome segregation either directly via slow MT turnover or indirectly by mechanical release of MTs during facilitated movement.
- Published
- 2007
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- View/download PDF
38. Versatile fluorescent probes for actin filaments based on the actin-binding domain of utrophin.
- Author
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Burkel BM, von Dassow G, and Bement WM
- Subjects
- Animals, Female, Fluorescent Antibody Technique methods, Humans, Photobleaching, Protein Structure, Tertiary, Xenopus, Actin Cytoskeleton metabolism, Fluorescent Dyes metabolism, Microfilament Proteins metabolism, Utrophin metabolism
- Abstract
Actin filaments (F-actin) are protein polymers that undergo rapid assembly and disassembly and control an enormous variety of cellular processes ranging from force production to regulation of signal transduction. Consequently, imaging of F-actin has become an increasingly important goal for biologists seeking to understand how cells and tissues function. However, most of the available means for imaging F-actin in living cells suffer from one or more biological or experimental shortcomings. Here we describe fluorescent F-actin probes based on the calponin homology domain of utrophin (Utr-CH), which binds F-actin without stabilizing it in vitro. We show that these probes faithfully report the distribution of F-actin in living and fixed cells, distinguish between stable and dynamic F-actin, and have no obvious effects on processes that depend critically on the balance of actin assembly and disassembly., ((c) 2007 Wiley-Liss, Inc.)
- Published
- 2007
- Full Text
- View/download PDF
39. Rho GTPase activity zones and transient contractile arrays.
- Author
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Bement WM, Miller AL, and von Dassow G
- Subjects
- Actins metabolism, Binding Sites, Biological Transport, Active, Cell Shape physiology, Cytokinesis physiology, Cytoskeleton metabolism, Feedback, Models, Biological, Receptor Cross-Talk, Signal Transduction, Subcellular Fractions metabolism, rho GTP-Binding Proteins metabolism
- Abstract
The Rho GTPases-Rho, Rac and Cdc42-act as molecular switches, cycling between an active GTP-bound state and an inactive GDP-bound state, to regulate the actin cytoskeleton. It has recently become apparent that the Rho GTPases can be activated in subcellular zones that appear semi-stable, yet are dynamically maintained. These Rho GTPase activity zones are associated with a variety of fundamental biological processes including symmetric and asymmetric cytokinesis and cellular wound repair. Here we review the basic features of Rho GTPase activity zones, suggest that these zones represent a fundamental signaling mechanism, and discuss the implications of zone properties from the perspective of both their function and how they are likely to be controlled., ((c) 2006 Wiley Periodicals, Inc.)
- Published
- 2006
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- View/download PDF
40. A ring-like template for abscission.
- Author
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von Dassow G and Bement WM
- Subjects
- Animals, Cell Division physiology, Humans, Secretory Vesicles metabolism, Cell Cycle Proteins metabolism, Membrane Fusion physiology
- Abstract
In the October 7th issue of Cell, it is shown that a ring-like structure containing the centrosomal protein centriolin acts as a local recruitment site for the membrane fusion machinery that controls abscission.
- Published
- 2005
- Full Text
- View/download PDF
41. A microtubule-dependent zone of active RhoA during cleavage plane specification.
- Author
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Bement WM, Benink HA, and von Dassow G
- Subjects
- Actin Cytoskeleton metabolism, Animals, Cleavage Stage, Ovum cytology, Cleavage Stage, Ovum physiology, Embryo, Nonmammalian cytology, Female, Intracellular Signaling Peptides and Proteins metabolism, Meiosis physiology, Myosins metabolism, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Sea Urchins, Species Specificity, Spindle Apparatus metabolism, Starfish, Strongylocentrotus purpuratus, Xenopus laevis, Cytokinesis physiology, Embryo, Nonmammalian metabolism, Microtubules metabolism, rhoA GTP-Binding Protein metabolism
- Abstract
Cytokinesis in animal cells results from the assembly and constriction of a circumferential array of actin filaments and myosin-2. Microtubules of the mitotic apparatus determine the position at which the cytokinetic actomyosin array forms, but the molecular mechanisms by which they do so remain unknown. The small GTPase RhoA has previously been implicated in cytokinesis. Using four-dimensional microscopy and a probe for active RhoA, we show that active RhoA concentrates in a precisely bounded zone before cytokinesis and is independent of actin assembly. Cytokinetic RhoA activity zones are common to four echinoderm species, the vertebrate Xenopus laevis, and the highly asymmetric cytokinesis accompanying meiosis. Microtubules direct the formation and placement of the RhoA activity zone, and the zone is repositioned after physical spindle displacement. We conclude that microtubules specify the cytokinetic apparatus via a dynamic zone of local RhoA activity.
- Published
- 2005
- Full Text
- View/download PDF
42. MCAK associates with the tips of polymerizing microtubules.
- Author
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Moore AT, Rankin KE, von Dassow G, Peris L, Wagenbach M, Ovechkina Y, Andrieux A, Job D, and Wordeman L
- Subjects
- Animals, CHO Cells, Cricetinae, Green Fluorescent Proteins, HeLa Cells, Humans, Microscopy, Video, Microtubules ultrastructure, Phosphorylation, Polymers metabolism, Protein Structure, Tertiary physiology, Protein Transport physiology, Recombinant Fusion Proteins metabolism, Cell Compartmentation physiology, Cell Polarity physiology, Kinesins metabolism, Microtubules metabolism
- Abstract
MCAK is a member of the kinesin-13 family of microtubule (MT)-depolymerizing kinesins. We show that the potent MT depolymerizer MCAK tracks (treadmills) with the tips of polymerizing MTs in living cells. Tip tracking of MCAK is inhibited by phosphorylation and is dependent on the extreme COOH-terminal tail of MCAK. Tip tracking is not essential for MCAK's MT-depolymerizing activity. We propose that tip tracking is a mechanism by which MCAK is preferentially localized to regions of the cell that modulate the plus ends of MTs.
- Published
- 2005
- Full Text
- View/download PDF
43. Light microscopy of echinoderm embryos.
- Author
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Strickland L, von Dassow G, Ellenberg J, Foe V, Lenart P, and Burgess D
- Subjects
- Animals, Cytoskeleton metabolism, Cytoskeleton ultrastructure, Echinodermata embryology, Echinodermata physiology, Embryo, Nonmammalian embryology, Embryo, Nonmammalian physiology, Female, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Male, Microdissection instrumentation, Microdissection methods, Microscopy instrumentation, Echinodermata cytology, Embryo, Nonmammalian cytology, Microscopy methods, Staining and Labeling methods, Tissue Fixation methods
- Published
- 2004
- Full Text
- View/download PDF
44. Perspective: Evolution and detection of genetic robustness.
- Author
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de Visser JA, Hermisson J, Wagner GP, Ancel Meyers L, Bagheri-Chaichian H, Blanchard JL, Chao L, Cheverud JM, Elena SF, Fontana W, Gibson G, Hansen TF, Krakauer D, Lewontin RC, Ofria C, Rice SH, von Dassow G, Wagner A, and Whitlock MC
- Subjects
- Adaptation, Biological, Epistasis, Genetic, Mutation, Population Density, Reproduction physiology, Biological Evolution, Environment, Phenotype, Selection, Genetic
- Abstract
Robustness is the invariance of phenotypes in the face of perturbation. The robustness of phenotypes appears at various levels of biological organization, including gene expression, protein folding, metabolic flux, physiological homeostasis, development, and even organismal fitness. The mechanisms underlying robustness are diverse, ranging from thermodynamic stability at the RNA and protein level to behavior at the organismal level. Phenotypes can be robust either against heritable perturbations (e.g., mutations) or nonheritable perturbations (e.g., the weather). Here we primarily focus on the first kind of robustness--genetic robustness--and survey three growing avenues of research: (1) measuring genetic robustness in nature and in the laboratory; (2) understanding the evolution of genetic robustness: and (3) exploring the implications of genetic robustness for future evolution.
- Published
- 2003
- Full Text
- View/download PDF
45. Ingeneue: a versatile tool for reconstituting genetic networks, with examples from the segment polarity network.
- Author
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Meir E, Munro EM, Odell GM, and Von Dassow G
- Subjects
- Animals, Diffusion, Dimerization, Gene Expression Regulation, Genes, Regulator genetics, Kinetics, Mice, Probability, Signal Transduction, Transcription, Genetic, Body Patterning genetics, Computer Simulation, Drosophila genetics, Models, Genetic, Software
- Abstract
Here we describe a software tool for synthesizing molecular genetic data into models of genetic networks. Our software program Ingeneue, written in Java, lets the user quickly turn a map of a genetic network into a dynamical model consisting of a set of ordinary differential equations. We developed Ingeneue as part of an ongoing effort to explore the design and evolvability of genetic networks. Ingeneue has three principal advantages over other available mathematical software: it automates instantiation of the same network model in each cell in a 2-D sheet of cells; it constructs model equations from pre-made building blocks corresponding to common biochemical processes; and it automates searches through parameter space, sensitivity analyses, and other common tasks. Here we discuss the structure of the software and some of the issues we have dealt with. We conclude with some examples of results we have achieved with Ingeneue for the Drosophila segment polarity network., (Copyright 2002 Wiley-Liss, Inc.)
- Published
- 2002
- Full Text
- View/download PDF
46. Design and constraints of the Drosophila segment polarity module: robust spatial patterning emerges from intertwined cell state switches.
- Author
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Von Dassow G and Odell GM
- Subjects
- Animals, Computer Simulation, DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, Drosophila Proteins genetics, Drosophila Proteins metabolism, Drosophila melanogaster genetics, Embryo, Nonmammalian cytology, Embryo, Nonmammalian embryology, Embryo, Nonmammalian metabolism, Feedback, Physiological, Gene Dosage, Gene Expression Regulation, Developmental, Genes, Insect, Homeodomain Proteins genetics, Homeodomain Proteins metabolism, Membrane Proteins genetics, Membrane Proteins metabolism, Proto-Oncogene Proteins genetics, Proto-Oncogene Proteins metabolism, Receptors, Cell Surface, Signal Transduction, Transcription Factors genetics, Transcription Factors metabolism, Wnt1 Protein, Body Patterning genetics, Drosophila melanogaster cytology, Drosophila melanogaster embryology, Models, Biological
- Abstract
The Drosophila segment polarity genes constitute the last tier in the segmentation cascade; their job is to maintain the boundaries between parasegments and provide positional "read-outs" within each parasegment for the entire developmental history of the animal. These genes constitute a relatively well-defined network with a relatively well-understood patterning task. In a previous publication (von Dassow et al. 2000. Nature 406:188-192) we showed that a computer model predicts the segment polarity network to be a robust boundary-making device. Here we elaborate those findings. First, we explore the constraints among parameters that govern the network model. Second, we test architectural variants of the core network, and show that the network tolerates a wide variety of adjustments in design. Third, we evaluate several topologically identical models that incorporate more or less molecular detail, finding that more-complex models perform noticeably better than simplified ones. Fourth, we discuss two instances in which the failure of the network model to behave in a life-like fashion highlights mechanistic details that need further experimental investigation. We conclude with an explanation of how the segment polarity network can be understood as an interwoven conspiracy of simple dynamical elements, several bistable switches and a homeostat. The robustness with which the network as a whole maintains a spatial regime of stable cell state emerges from generic dynamical properties of these simple elements., (Copyright 2002 Wiley-Liss, Inc.)
- Published
- 2002
- Full Text
- View/download PDF
47. Robustness, flexibility, and the role of lateral inhibition in the neurogenic network.
- Author
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Meir E, von Dassow G, Munro E, and Odell GM
- Subjects
- Alleles, Animals, Biological Evolution, Cell Differentiation, Cell Lineage, Drosophila melanogaster cytology, Drosophila melanogaster genetics, Drosophila melanogaster metabolism, Homeostasis, Nerve Net cytology, Neurons cytology, Neurons metabolism, Recombination, Genetic, Repressor Proteins metabolism, Computer Simulation, Drosophila melanogaster embryology, Models, Neurological, Nerve Net embryology, Nerve Net metabolism, Proteins
- Abstract
Background: Many gene networks used by developing organisms have been conserved over long periods of evolutionary time. Why is that? We showed previously that a model of the segment polarity network in Drosophila is robust to parameter variation and is likely to act as a semiautonomous patterning module. Is this true of other networks as well?, Results: We present a model of the core neurogenic network in Drosophila. Our model exhibits at least three related pattern-resolving behaviors that the real neurogenic network accomplishes during embryogenesis in Drosophila. Furthermore, we find that it exhibits these behaviors across a wide range of parameter values, with most of its parameters able to vary more than an order of magnitude while it still successfully forms our test patterns. With a single set of parameters, different initial conditions (prepatterns) can select between different behaviors in the network's repertoire. We introduce two new measures for quantifying network robustness that mimic recombination and allelic divergence and use these to reveal the shape of the domain in the parameter space in which the model functions. We show that lateral inhibition yields robustness to changes in prepatterns and suggest a reconciliation of two divergent sets of experimental results. Finally, we show that, for this model, robustness confers functional flexibility., Conclusions: The neurogenic network is robust to changes in parameter values, which gives it the flexibility to make new patterns. Our model also offers a possible resolution of a debate on the role of lateral inhibition in cell fate specification.
- Published
- 2002
- Full Text
- View/download PDF
48. The segment polarity network is a robust developmental module.
- Author
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von Dassow G, Meir E, Munro EM, and Odell GM
- Subjects
- Animals, Body Patterning genetics, Drosophila embryology, Drosophila genetics, Genes, Insect, Body Patterning physiology, Computer Simulation, Drosophila physiology, Models, Biological
- Abstract
All insects possess homologous segments, but segment specification differs radically among insect orders. In Drosophila, maternal morphogens control the patterned activation of gap genes, which encode transcriptional regulators that shape the patterned expression of pair-rule genes. This patterning cascade takes place before cellularization. Pair-rule gene products subsequently 'imprint' segment polarity genes with reiterated patterns, thus defining the primordial segments. This mechanism must be greatly modified in insect groups in which many segments emerge only after cellularization. In beetles and parasitic wasps, for instance, pair-rule homologues are expressed in patterns consistent with roles during segmentation, but these patterns emerge within cellular fields. In contrast, although in locusts pair-rule homologues may not control segmentation, some segment polarity genes and their interactions are conserved. Perhaps segmentation is modular, with each module autonomously expressing a characteristic intrinsic behaviour in response to transient stimuli. If so, evolution could rearrange inputs to modules without changing their intrinsic behaviours. Here we suggest, using computer simulations, that the Drosophila segment polarity genes constitute such a module, and that this module is resistant to variations in the kinetic constants that govern its behaviour.
- Published
- 2000
- Full Text
- View/download PDF
49. Modularity in animal development and evolution: elements of a conceptual framework for EvoDevo.
- Author
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von Dassow G and Munro E
- Subjects
- Animals, Biological Evolution, Developmental Biology, Models, Biological, Morphogenesis physiology
- Abstract
For at least a century biologists have been talking, mostly in a black-box sense, about developmental mechanisms. Only recently have biologists succeeded broadly in fishing out the contents of these black boxes. Unfortunately the view from inside the black box is almost as obscure as that from without, and developmental biologists increasingly confront the need to synthesize known facts about developmental phenomena into mechanistic descriptions of complex systems. To evolutionary biologists, the emerging understanding of developmental mechanisms is an opportunity to understand the origins of variation not just in the selective milieu but also in the variability of the developmental process, the substrate for morphological change. Ultimately, evolutionary developmental biology (EvoDevo) expects to articulate how the diversity of organic form results from adaptive variation in development. This ambition demands a shift in the way biologists describe causality, and the central problem of EvoDevo is to understand how the architecture of development confers evolvability. We argue in this essay that it makes little sense to think of this question in terms of individual gene function or isolated morphometrics, but rather in terms of higher-order modules such as gene networks and homologous characters. We outline the conceptual challenges raised by this shift in perspective, then present a selection of case studies we believe to be paradigmatic for how biologists think about modularity in development and evolution. J. Exp. Zool. (Mol. Dev. Evol.) 285:307-325, 1999., (Copyright 1999 Wiley-Liss, Inc.)
- Published
- 1999
50. The corn inhibitor of blood coagulation factor XIIa. Crystallization and preliminary crystallographic analysis.
- Author
-
Pedersen LC, Yee VC, von Dassow G, Hazeghazam M, Reeck GR, Stenkamp RE, and Teller DC
- Subjects
- Cloning, Molecular, Crystallization, Crystallography, X-Ray methods, Humans, Hydrogen-Ion Concentration, Molecular Weight, Recombinant Proteins chemistry, Factor XIIa antagonists & inhibitors, Zea mays
- Abstract
A 13.6 kDa protein from corn seeds is known to be a highly selective inhibitor of human blood coagulation Factor XIIa (or activated Hageman factor). We have crystallized this inhibitor at 23 degrees C and pH 7.5 from a solution of 30% polyethylene glycol 400, 0.2 M MgCl2, and 0.1 M Hepes. The crystals diffract to at least 2.1 A resolution. The space group is P4(2)2(1)2 with a = b = 57.15 A and c = 80.5 A. The crystals contain 51% solvent. Two heavy atom derivatives have been identified.
- Published
- 1994
- Full Text
- View/download PDF
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