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The holobiont concept has revolutionized our understanding of plant-associated microbiomes and their significance for the development, fitness, growth and resilience of their host plants. The olive tree holds an iconic status within the Mediterranean Basin. Innovative changes introduced in olive cropping systems, driven by the increasing demand of its derived products, are not only modifying the traditional landscape of this relevant commodity but may also imply that either traditional or emerging stresses can affect it in ways yet to be thoroughly investigated. Incomplete information is currently available about the impact of abiotic and biotic pressures on the olive holobiont, what includes the specific features of its associated microbiome in relation to the host's structural, chemical, genetic and physiological traits. This comprehensive review consolidates the existing knowledge about stress factors affecting olive cultivation and compiles the information available of the microbiota associated with different olive tissues and organs. We aim to offer, based on the existing evidence, an insightful perspective of diverse stressing factors that may disturb the structure, composition and network interactions of the olive-associated microbial communities, underscoring the importance to adopt a more holistic methodology. The identification of knowledge gaps emphasizes the need for multilevel research approaches and to consider the holobiont conceptual framework in future investigations. By doing so, more powerful tools to promote olive's health, productivity and resilience can be envisaged. These tools may assist in the designing of more sustainable agronomic practices and novel breeding strategies to effectively face evolving environmental challenges and the growing demand of high quality food products. [ABSTRACT FROM AUTHOR]

The olive tree (Olea europaea), a non-tropical woody crop that occupies the largest area in the world, is severely affected by the fungus Verticillium dahliae worldwide. In this regard, there is currently detailed information on the level of resistance to this pathogen in the main olive varieties. However, there is little information on quantitative aspects of its anatomy and on the existence of anatomical differences between varieties that could be related to the differential resistance response observed. In the present work, a quantitative study of the xylem of 'Picual', susceptible, and 'Frantoio', resistant, to V. dahliae is carried out. This study also provides quantitative data on the xylem in different areas of the plant, an aspect on which there is not much information for the olive tree. Among the parameters evaluated, it is probably the greater conductive capacity in the xylem tissue that 'Frantoio' presents, mainly due to the greater density of its vessels, which has a more relevant role in the resistance and natural recovery that this cultivar manifests to the disease. In any case, these constitutive anatomical differences, and those others that can be induced in plants during infections, should be investigated in future work that includes inoculation with the pathogen. [ABSTRACT FROM AUTHOR]

The limited effectiveness of current strategies to control Verticillium wilt of olive (VWO) prompts the need for innovative approaches. This study explores the basal metabolome of 43 olive cultivars with varying resistance levels to Verticillium dahliae , offering alternative insights for olive crossbreeding programmes. The use of an innovative UHPLC-ESI-TimsTOF MS/MS platform enabled the annotation of more than 70 compounds across different olive organs (root, stem, and leaf) and the creation of a preliminary compilation of TIMS CCS N2 experimental data for more reliable metabolite annotation. Moreover, it allowed the documentation of numerous isomeric species in the studied olive organs by resolving hidden compounds. Multivariate statistical analyses revealed significant metabolome variability between highly resistant and susceptible cultivars, which was further investigated through supervised PLS-DA. Key markers indicative of VWO susceptibility were annotated and characteristic compositional patterns were established. Stem tissue exhibited the highest discriminative capability, while root and leaf tissues also showed significant predictive potential.

The soil infestation of Verticillium dahliae has significant Verticillium wilt of olive (VWO) with epidemiological consequences which could limit the expansion of the crop. In this context, there is a misunderstood history of the crops and soil property interactions associated with inoculum density (ID) increases in the soil. In this study, the effect of the combination of both factors was assessed on the ID of V. dahliae in the olive-growing areas of the Iberian Peninsula. Afterwards, the relationship of the ID to the mentioned factors was explored. The detection percentage and ID were higher in Spain than Portugal, even though the fields with a very favourable VWO history had a higher ID than that of the fields with a barely favourable history, regardless of the origin. The soil physicochemical parameters were able to detect the degree to which the ID was increased by the previous cropping history. By using a decision tree classifier, the percentage of clay was the best indicator for the V. dahliae ID regardless of the history of the crops. However, active limestone and the cation exchange capacity were only suitable ID indicators when <2 or 4 host crops of the pathogen were established in the field for five years, respectively. The V. dahliae ID was accurately predicted in this study for the orchard choices in the establishment of the olive. [ABSTRACT FROM AUTHOR]

The olive tree (Olea europaea), a non-tropical woody crop that occupies the largest area in the world, is severely affected by the fungus Verticillium dahliae worldwide. In this regard, there is currently detailed information on the level of resistance to this pathogen in the main olive varieties. However, there is little information on quantitative aspects of its anatomy and on the existence of anatomical differences between varieties that could be related to the differential resistance response observed. In the present work, a quantitative study of the xylem of ‘Picual’, susceptible, and ‘Frantoio’, resistant, to V. dahliae is carried out. This study also provides quantitative data on the xylem in different areas of the plant, an aspect on which there is not much information for the olive tree. Among the parameters evaluated, it is probably the greater conductive capacity in the xylem tissue that ‘Frantoio’ presents, mainly due to the greater density of its vessels, which has a more relevant role in the resistance and natural recovery that this cultivar manifests to the disease. In any case, these constitutive anatomical differences, and those others that can be induced in plants during infections, should be investigated in future work that includes inoculation with the pathogen.

Abstract Background The olive tree is of particular economic interest in the Mediterranean basin. Researchers have conducted several studies on one of the most devastating disorders affecting this tree, the Verticillium wilt, which causes substantial economic losses in numerous areas. We analyzed metatranscriptomic samples taken from a previous study conducted on leaves and roots of Olea europaea that were infected with Verticillium dahliae. In addition, we also analyzed mechanically damaged roots. The aim of our approach is to describe the dynamics of the root microbiome after severe perturbations. Results Our results not only describe the dynamics of the microbial community associated with the disturbance, but also show the high complexity of these systems and explain how this can lead to a conflicting assignment of the various types of parasitism observed in a specific organism. Conclusions Our findings indicate that this infection, although led by Verticillium, is driven not by a single species, but by a polymicrobial consortium that also includes natural endophytes of the olive tree. This community contains both biotrophic and necrotrophic organisms that alternate and live together during the infection. In addition, opportunistic organisms appear that take profit not from plant tissues, but from new emerging populations of microorganisms. Therefore, this system can be described as a complex biological system composed of different interacting communities. Notably, our work has important considerations when it comes to classifying the type of parasitism of a given species.

Background: The olive tree is of particular economic interest in the Mediterranean basin. Researchers have conducted several studies on one of the most devastating disorders affecting this tree, the Verticillium wilt, which causes substantial economic losses in numerous areas. We analyzed metatranscriptomic samples taken from a previous study conducted on leaves and roots of Olea europaea that were infected with Verticillium dahliae. In addition, we also analyzed mechanically damaged roots. The aim of our approach is to describe the dynamics of the root microbiome after severe perturbations. Results: Our results not only describe the dynamics of the microbial community associated with the disturbance, but also show the high complexity of these systems and explain how this can lead to a conflicting assignment of the various types of parasitism observed in a specific organism. Conclusions: Our findings indicate that this infection, although led by Verticillium, is driven not by a single species, but by a polymicrobial consortium that also includes natural endophytes of the olive tree. This community contains both biotrophic and necrotrophic organisms that alternate and live together during the infection. In addition, opportunistic organisms appear that take profit not from plant tissues, but from new emerging populations of microorganisms. Therefore, this system can be described as a complex biological system composed of different interacting communities. Notably, our work has important considerations when it comes to classifying the type of parasitism of a given species. [ABSTRACT FROM AUTHOR]

* Verticillium wilt of olive (VWO) is one of the most serious biotic constraints for this tree crop. Our knowledge of the genetics of the tolerance/resistance to this disease is very limited. Here we show that tolerance of the cv Frantoio relies on both basal and early pathogen-induced differential transcriptomic responses. * A comparative transcriptomic analysis (RNA-seq) was conducted in root tissues of cvs Frantoio (VWO-tolerant) and Picual (VWO-susceptible). RNA samples originated from roots of inoculated olive plants during the early infection stages by Verticillium dahliae (highly virulent, defoliating pathotype). * A huge number of differentially expressed genes (DEGs) were found between 'Frantoio' and 'Picual' (27 312 unigenes) in the absence of the pathogen. Upon infection with V. dahliae, 'Picual' and 'Frantoio' plants responded differently too. In the early infection stages, four clusters of DEGs could be identified according to their time-course expression patterns. Among others, a pathogenesis-related protein of the Bet v I family and a dirigent-like protein involved in lignification, and several BAK1, NHL1, reactive oxygen species stress response and BAM unigenes showed noticeable differences between cultivars. * Tolerance of 'Frantoio' plants to VWO is a consequence of a complex and multifaceted process which involves many plant traits. [ABSTRACT FROM AUTHOR]

Verticillium dahliae Kleb. causes Verticillium wilts in many herbaceous and woody species. Many hosts of the pathogen are commonly cultivated in Andalucía (southern Spain), particularly major crops such as cotton, vegetables, almond, peach and, particularly, olive, in which the fungus causes Verticillium wilt of olive. Infective structures of the pathogen (microsclerotia), produced in the late phases of the infection cycle in senescent tissues of the infected plants, can be spread over short or long distances by a number of dispersal methods. Irrigation water is one of the factors implicated in this spread of V. dahliae. Indeed, increasing irrigation dosages in crops or an inadequate irrigation schedule have been identified as cultural practices favouring Verticillium wilt onset and severity in olive and other hosts. Most of the cultivated areas in the Guadalquivir Valley of Andalucía are irrigated by pumping stations using modern infrastructures that supply water to thousands of hectares of farm land, which are usually associated with irrigation communities. This study demonstrates that the pathogen survives in the sediment and particles suspended in water used for irrigation in different facilities of an irrigation community, that were involved in distributing water (main canal and reception tank of a investigated pumping station, irrigation pools and sand from filters). Thus microsclerotia moves from the pumping station to individual plots (olive and cotton cultivated farm) as viable microsclerotia, free or embedded in soil particles and plant debris, suspended in the irrigation water, or deposited in the sludge in piping systems or water storage ponds. We have detected amounts of inoculum in the solid pellet samples in these facilities that ranged from 2.7 to 6.7 microsclerotia per gram. Besides this, water from drippers in cultivated plots released into the soil a variable amount of infective propagules of the pathogen over time that accounted for 3.75 microsclerotia/m in some of the recording times. Therefore, irrigation water becomes an important source of inoculum that is very effectively involved in medium and long-distance spread of the pathogen. [ABSTRACT FROM AUTHOR]

Pseudomonas simiae PICF7 is an indigenous inhabitant of the olive ( Olea europaea L.) rhizosphere/root endosphere and an effective biocontrol agent against Verticillium wilt of olive (VWO), caused by the soil-borne fungus Verticillium dahliae . This study aimed to evaluate the potential involvement of selected phenotypes of strain PICF7 in root colonization ability and VWO biocontrol. Therefore, a random transposon-insertion mutant bank of P. simiae PICF7 was screened for the loss of phenotypes likely involved in rhizosphere/soil persistence (copper resistance), root colonization (biofilm formation) and plant growth promotion (phytase activity). Transposon insertions in genes putatively coding for the transcriptional regulator CusR or the chemotaxis protein CheV were found to affect copper resistance, whereas an insertion in fleQ gene putatively encoding a flagellar regulatory protein hampered the ability to form a biofilm. However, these mutants displayed the same antagonistic effect against V. dahliae as the parental strain. Remarkably, two mutants impaired in biofilm formation were never found inside olive roots, whereas their ability to colonize the root exterior and to control VWO remained unaffected. Endophytic colonization of olive roots was unaltered in mutants impaired in copper resistance and phytase production. Results demonstrated that the phenotypes studied were irrelevant for VWO biocontrol.

Among biotic constraints affecting olive trees cultivation worldwide, the soil-borne fungus Verticillium dahliae is considered one of the most serious threats. Olive cultivars display differential susceptibility to the disease, but our knowledge on the pathogen's responses when infecting varieties differing in susceptibility is scarce. A comparative transcriptomic analysis (RNA-seq) was conducted in olive cultivars Picual (susceptible) and Frantoio (tolerant). RNA samples originated from roots during the first two weeks after inoculation with V. dahliae defoliating (D) pathotype. Verticillium dahliae mRNA amount was overwhelmingly higher in roots of the susceptible cultivar, indicating that proliferation of pathogen biomass is favored in 'Picual'. A significant larger number of V. dahliae unigenes (11 fold) were only induced in this cultivar. Seven clusters of differentially expressed genes (DEG) were identified according to time-course expression patterns. Unigenes potentially coding for niche-adaptation, pathogenicity, virulence and microsclerotia development were induced in 'Picual', while in 'Frantoio' expression remained negligible or null. Verticillium dahliae D pathotype transcriptome responses are qualitatively and quantitatively different, and depend on cultivar susceptibility level. The much larger V. dahliae biomass found in 'Picual' roots is a consequence of both host and pathogen DEG explaining, to a large extent, the higher aggressiveness exerted over this cultivar. [ABSTRACT FROM AUTHOR]