1. RNA-seq analysis of Lgr6 + stem cells and identification of an Lgr6 isoform.
- Author
-
van de Glind GC, Bastidas Torres AN, Zoutman WH, van der Zeeuw SAJ, Kiełbasa SM, de Gruijl FR, and Tensen CP
- Subjects
- Animals, Carcinogenesis genetics, Carcinogenesis radiation effects, Female, Green Fluorescent Proteins genetics, Male, Mice, Mice, Transgenic, Protein Isoforms, Sequence Analysis, RNA, Ultraviolet Rays, Receptors, G-Protein-Coupled genetics, Stem Cells, Transcriptome
- Abstract
We studied Lgr6
+ stem cells in experimental UV carcinogenesis in hairless mice. For further characterization through RNA-seq, these stem cells were isolated by FACS from transgenic hairless mice bearing an EGFP-Ires-CreERT2 reporter cassette inserted into exon 1 of the Lgr6 gene (purity confirmed by human ERT2 expression). Between Lgr6/EGFP+ and Lgr6/EGFP- basal cells (Tg/wt), 682 RNAs were differentially expressed, indicating stemness and expression of cancer-related pathways in Lgr6/EGFP+ cells. We discovered that suspected "Lgr6 null" mice (Tg/Tg) expressed RNA of an Lgr6 isoform (delta-Lgr6, lacking 74 N-terminal aa) which could be functional and explain the lack of a phenotype., (© 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.)- Published
- 2018
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