280 results on '"van Leeuwen TG"'
Search Results
2. Cancer-ID: Toward Identification of Cancer by Tumor-Derived Extracellular Vesicles in Blood
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Rikkert, LG, Beekman, P, Caro, J, Coumans, FAW, Enciso-Martinez, A, Jenster, Guido, Le Gac, S, Lee, W, van Leeuwen, TG, Loozen, GB, Nanou, A, Nieuwland, R, Offerhaus, HL, Otto, C, Pegtel, DM, Piontek, MC, Pol, E, de Rond, L, Roos, WH, Schasfoort, RBM, Wauben, MHM, Zuilhof, H, Terstappen, L, Rikkert, LG, Beekman, P, Caro, J, Coumans, FAW, Enciso-Martinez, A, Jenster, Guido, Le Gac, S, Lee, W, van Leeuwen, TG, Loozen, GB, Nanou, A, Nieuwland, R, Offerhaus, HL, Otto, C, Pegtel, DM, Piontek, MC, Pol, E, de Rond, L, Roos, WH, Schasfoort, RBM, Wauben, MHM, Zuilhof, H, and Terstappen, L
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- 2020
3. Parametric imaging of attenuation by optical coherence tomography: Review of models, methods, and clinical translation
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Gong, P, Almasian, M, van Soest, Gijs, de Bruin, DM, van Leeuwen, TG, Sampson, DD, Faber, DJ, Gong, P, Almasian, M, van Soest, Gijs, de Bruin, DM, van Leeuwen, TG, Sampson, DD, and Faber, DJ
- Published
- 2020
4. Using Nanoshells to achieve molecular contrast in OCT: study results and review of other contrast agents for OCT: 3324
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FABER, D J, DE, BRUIN DM, VAN, VELTHOVEN ME, NOISSER, T, GRAF, C, ECKART, R, VERBRAAK, F D, and VAN, LEEUWEN TG
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- 2006
5. Weight velocity equations with 14-448 days time separated weights should not be used for infants under 3 years of age
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Gemert, MJC, Bruijninckx, Boy, Neumann, HAM, Sauer, PJJ, de Bruin, DM, van Leeuwen, TG, Gemert, MJC, Bruijninckx, Boy, Neumann, HAM, Sauer, PJJ, de Bruin, DM, and van Leeuwen, TG
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- 2019
6. Limitations of Weight Velocity Analysis by Commercial Computer Program Growth Analyser Viewer Edition
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Gemert, MJC, Bruijninckx, CMA, van Leeuwen, TG, Neumann, HAM, Sauer, PJJ, Gemert, MJC, Bruijninckx, CMA, van Leeuwen, TG, Neumann, HAM, and Sauer, PJJ
- Published
- 2019
7. Summary and outlook
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van Leeuwen, TG, Regar, Evelyn, Serruys, PWJC (Patrick), Regar, E., van Leeuwen, T.G., Serruys, P.W., and Cardiology
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- 2007
8. Mitochondrial PO measured by delayed fluorescence of endogenous protoporphyrin IX
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Mik, Bert, Stap, J, Sinaasappel, M, Beek, JF, Aten, JA, van Leeuwen, TG, Ince, Can, Anesthesiology, and Surgery
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- 2006
9. TU-C-220-03: Visualization of Breast Carcinoma Using Photoacoustic Imaging: The Ongoing Twente Experience
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Heijblom, M, primary, Piras, D, additional, Xia, W, additional, Hespen, JCG Van, additional, Van Den Engh, F, additional, Klaase, JM, additional, Van Leeuwen, TG, additional, Steenbergen, W, additional, and Manohar, S, additional
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- 2011
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10. Scanning beyond the limits of standard OCT: OCT scans of the peripheral retina and the anterior chamber angle with a slitlamp integtrated FD-OCT system
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STEHOUWER, M, primary, VERBRAAK, FD, additional, DE VRIES, H, additional, and VAN LEEUWEN, TG, additional
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- 2009
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11. Hyperspectral imaging for the age estimation of blood stains at the crime scene.
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Edelman G, van Leeuwen TG, and Aalders MC
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- 2012
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12. How the blood pool properties at onset affect the temporal behavior of simulated bruises.
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Stam B, van Gemert MJ, van Leeuwen TG, Aalders MC, Stam, Barbara, Gemert, Martin J C van, Leeuwen, Ton G van, and Aalders, Maurice C G
- Abstract
The influence of initial blood pool properties on the temporal behavior of bruises is currently unknown. We addressed this important issue by utilizing three typical classes of bruises in our three-layered finite compartment model. We simulated the effects of their initial shapes, regularity of boundaries and initial blood concentration distributions (gaussian vs. homogeneous) on the hemoglobin and bilirubin areas in the dermal top layer. Age determination of bruises with gaussian hemoglobin concentration was also addressed. We found that the initial blood pool properties strongly affect bruise behavior. We determined the age of a 200-h simulated bruise with gaussian hemoglobin concentration with 3 h uncertainty. In conclusion, bruise behavior depends non-intuitively on the initial blood pool properties; hence, a model that includes shape, area and concentration distribution at onset is indispensable. Future age determination, including inhomogeneous hemoglobin distributions, will likely be based on the presented method for gaussian distributions. [ABSTRACT FROM AUTHOR]
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- 2012
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13. 3D finite compartment modeling of formation and healing of bruises may identify methods for age determination of bruises.
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Stam B, van Gemert MJ, van Leeuwen TG, Aalders MC, Stam, Barbara, van Gemert, Martin J C, van Leeuwen, Ton G, and Aalders, Maurice C G
- Abstract
Simulating the spatial and temporal behavior of bruises may identify methods that allow accurate age determination of bruises to assess child abuse. We developed a numerical 3D model to simulate the spatial kinetics of hemoglobin and bilirubin during the formation and healing of bruises. Using this model, we studied how skin thickness, bruise diameter and diffusivities affect the formation and healing of circular symmetric bruises and compared a simulated bruise with a natural inhomogeneous bruise. Healing is faster for smaller bruises in thinner and less dense skin. The simulated and natural bruises showed similar spatial and temporal dynamics. The different spatio-temporal dynamics of hemoglobin and bilirubin allows age determination of model bruises. Combining our model predictions with individual natural bruises may allow optimizing our model parameters. It may particularly identify methods for more accurate age determination than currently possible to aid the assessment of child abuse. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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14. All-reflective tethered capsule endoscope for multimodal optical coherence tomography in the esophagus.
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Attendu X, Bloemen PR, Kind NH, Faber DJ, de Bruin DM, Boudoux C, and van Leeuwen TG
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- Humans, Capsule Endoscopes, Esophageal Neoplasms diagnostic imaging, Multimodal Imaging instrumentation, Multimodal Imaging methods, Tomography, Optical Coherence methods, Tomography, Optical Coherence instrumentation, Esophagus diagnostic imaging, Equipment Design
- Abstract
Significance: Esophageal cancer is becoming increasingly prevalent in Western countries. Early detection is crucial for effective treatment. Multimodal imaging combining optical coherence tomography (OCT) with complementary optical imaging techniques may provide enhanced diagnostic capabilities by simultaneously assessing tissue morphology and biochemical content., Aim: We aim to develop a tethered capsule endoscope (TCE) that can accommodate a variety of point-scanning techniques in addition to OCT without requiring design iterations on the optical or mechanical design., Approach: We propose a TCE utilizing exclusively reflective optics to focus and steer light from and to a double-clad fiber. Specifically, we use an ellipsoidal mirror to achieve finite conjugation between the fiber tip and the imaging plane., Results: We demonstrate a functional all-reflective TCE. We first detail the design, fabrication, and assembly steps required to obtain such a device. We then characterize its performance and demonstrate combined OCT at 1300 nm and visible spectroscopic imaging in the 500- to 700-nm range. Finally, we discuss the advantages and limitations of the proposed design., Conclusions: An all-reflective TCE is feasible and allows for achromatic high-quality imaging. Such a device could be utilized as a platform for testing various combinations of modalities to identify the optimal candidates without requiring design iterations., (© 2024 The Authors.)
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- 2024
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15. Modeling pulsed dye laser treatment of psoriatic plaques by combining numerical methods and image-derived lesion morphologies.
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Wilk LS, Doppegieter M, van der Beek N, van Leeuwen TG, and Aalders MCG
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- Humans, Microscopy, Confocal, Finite Element Analysis, Models, Biological, Lasers, Dye therapeutic use, Psoriasis radiotherapy, Psoriasis pathology, Psoriasis diagnostic imaging
- Abstract
Objectives: Knowledge of the physical effects of pulsed dye laser (PDL) treatment of psoriatic lesions is essential in unraveling the remedial mechanisms of this treatment and hence also in maximizing in its disease-modifying potential. Therefore, the main objective of this study was to provide estimates of these physical effects (for laser wavelengths of 585 and 595 nm), with the aim of identifying pathogenic processes that may be affected by these conditions., Methods: We modeled the laser light propagation and subsequent photothermal heating by numerically solving the transient diffusion and heat equations simultaneously. To this end, we used the finite element method in conjunction with an image-derived psoriatic lesion morphology (which was defined by segmenting blood vessels from a confocal microscopy image of a fluorescently labeled section of a 3 mm punch biopsy of a psoriatic lesion). The resulting predictions of the generated temperature field within the lesion were then used to assess the possibility of stalling or arresting some suspected pathogenic processes., Results: According to our results, it is conceivable that perivascular nerves are thermally denatured, as almost all locations that reach 60°C were found to be within 18 µm (at 585 nm) and 11 µm (at 595 nm) of a blood vessel wall. Furthermore, activation of TRPV1 and TRPV2 channels in perivascular neuronal and immune cells is highly likely, since a critical temperature of 43°C is generated at locations within up to 350 µm of a vessel wall (at both wavelengths) and sustained for up to 700 ms (at 585 nm) and 40 ms (at 595 nm), while a critical temperature of 52°C is reached by locations within 80 µm (at 585 nm) and 30 µm (at 595 nm) of a vessel wall and sustained for up to 100 ms (at 585 nm) and 30 ms (at 595 nm). Finally, we found that the blood vessel coagulation-inducing temperature of 70°C is sustained in the vascular epithelium for up to 19 and 5 ms at 585 and 595 nm, respectively, rendering partial or total loss of vascular functionality a distinct possibility., Conclusions: The presented approach constitutes a useful tool to provide realistic estimates of the photothermal effects of PDL treatment of psoriatic plaques (as well as other selective photothermolysis-based treatments), yielding information that is essential in guiding future experimental studies toward unraveling the remedial mechanisms of these treatments., (© 2024 The Authors. Lasers in Surgery and Medicine published by Wiley Periodicals LLC.)
- Published
- 2024
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16. Towards non-invasive tissue hydration measurements with optical coherence tomography.
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Neubrand LB, van Leeuwen TG, and Faber DJ
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- Humans, Tomography, Optical Coherence, Water chemistry
- Abstract
The attenuation coefficient ( μ OCT ) measured by optical coherence tomography (OCT) has been used to determine tissue hydration. Previous dual-wavelength OCT systems could not attain the needed precision, which we attribute to the absence of wavelength-dependent scattering of tissue in the underlying model. Assuming that scattering can be described using two parameters, we propose a triple/quadrupole-OCT system to achieve clinically relevant precision in water volume fraction. In this study, we conduct a quantitative analysis to determine the necessary precision of μ OCT measurements and compare it with numerical simulation. Our findings emphasize that achieving a clinically relevant assessment of a 2% water fraction requires determining the attenuation coefficient with a remarkable precision of 0.01 m m - 1 . This precision threshold is influenced by the chosen wavelength for attenuation measurement and can be enhanced through the inclusion of a fourth wavelength range., (© 2024 The Authors. Journal of Biophotonics published by Wiley‐VCH GmbH.)
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- 2024
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17. Comment to Noll et al. "Artery-to-vein anastomoses in unequally divided placentas and their association with birthweight discordance".
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van Gemert MJC, VanBavel E, Nikkels PGJ, and van Leeuwen TG
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- Humans, Female, Pregnancy, Arteriovenous Anastomosis, Infant, Newborn, Placenta blood supply, Birth Weight
- Abstract
Competing Interests: Declaration of competing interest None.
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- 2024
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18. Erratum: Model for the diffuse reflectance in spatial frequency domain imaging (Erratum).
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Post AL, Faber DJ, and van Leeuwen TG
- Abstract
[This corrects the article DOI: 10.1117/1.JBO.28.4.046002.]., (© 2024 The Authors.)
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- 2024
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19. The impact of temperature on vascular function in connection with vascular laser treatment.
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Doppegieter M, van Leeuwen TG, Aalders MCG, de Vos J, van Bavel ET, and Bakker ENTP
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- Animals, Rats, Male, Myocytes, Smooth Muscle physiology, Myocytes, Smooth Muscle radiation effects, Vasodilation radiation effects, Vasodilation physiology, Temperature, Muscle, Smooth, Vascular radiation effects, Muscle, Smooth, Vascular physiology, Endothelial Cells radiation effects, Endothelial Cells physiology, Vasoconstriction radiation effects, Vasoconstriction physiology, Endothelium, Vascular radiation effects, Rats, Wistar, Lasers, Dye therapeutic use
- Abstract
Pulsed dye lasers are used effectively in the treatment of psoriasis with long remission time and limited side effects. It is, however, not completely understood which biological processes underlie its favorable outcome. Pulsed dye laser treatment at 585-595 nm targets hemoglobin in the blood, inducing local hyperthermia in surrounding blood vessels and adjacent tissues. While the impact of destructive temperatures on blood vessels has been well studied, the effects of lower temperatures on the function of several cell types within the blood vessel wall and its periphery are not known. The aim of our study is to assess the functionality of isolated blood vessels after exposure to moderate hyperthermia (45 to 60°C) by evaluating the function of endothelial cells, smooth muscle cells, and vascular nerves. We measured blood vessel functionality of rat mesenteric arteries (n=19) by measuring vascular contraction and relaxation before and after heating vessels in a wire myograph. To this end, we elicited vascular contraction by addition of either high potassium solution or the thromboxane analogue U46619 to stimulate smooth muscle cells, and electrical field stimulation (EFS) to stimulate nerves. For measurement of endothelium-dependent relaxation, we used methacholine. Each vessel was exposed to one temperature in the range of 45-60°C for 30 seconds and a relative change in functional response after hyperthermia was determined by comparison with the response per stimulus before heating. Non-linear regression was used to fit our dataset to obtain the temperature needed to reduce blood vessel function by 50% (Half maximal effective temperature, ET50). Our findings demonstrate a substantial decrease in relative functional response for all three cell types following exposure to 55°C-60°C. There was no significant difference between the ET50 values of the different cell types, which was between 55.9°C and 56.9°C (P>0.05). Our data show that blood vessel functionality decreases significantly when exposed to temperatures between 55°C-60°C for 30 seconds. The results show functionality of endothelial cells, smooth muscle cells, and vascular nerves is similarly impaired. These results help to understand the biological effects of hyperthermia and may aid in tailoring laser and light strategies for selective photothermolysis that contribute to disease modification of psoriasis after pulsed dye laser treatment., (© 2024. The Author(s).)
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- 2024
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20. Poloxamer-188 as a wetting agent for microfluidic resistive pulse sensing measurements of extracellular vesicles.
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Shahsavari M, Nieuwland R, van Leeuwen TG, and van der Pol E
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- Humans, Polysorbates chemistry, Serum Albumin, Bovine chemistry, Microfluidics methods, Wettability, Microfluidic Analytical Techniques instrumentation, Microfluidic Analytical Techniques methods, Animals, Poloxamer chemistry, Extracellular Vesicles metabolism, Extracellular Vesicles chemistry
- Abstract
Introduction: Microfluidic resistive pulse sensing (MRPS) can determine the concentration and size distribution of extracellular vesicles (EVs) by measuring the electrical resistance of single EVs passing through a pore. To ensure that the sample flows through the pore, the sample needs to contain a wetting agent, such as bovine serum albumin (BSA). BSA leaves EVs intact but occasionally results in unstable MRPS measurements. Here, we aim to find a new wetting agent by evaluating Poloxamer-188 and Tween-20., Methods: An EV test sample was prepared using an outdated erythrocyte blood bank concentrate. The EV test sample was diluted in Dulbecco's phosphate-buffered saline (DPBS) or DPBS containing 0.10% BSA (w/v), 0.050% Poloxamer-188 (v/v) or 1.00% Tween-20 (v/v). The effect of the wetting agents on the concentration and size distribution of EVs was determined by flow cytometry. To evaluate the precision of sample volume determination with MRPS, the interquartile range (IQR) of the particles transit time through the pore was examined. To validate that DPBS containing Poloxamer-188 yields reliable MRPS measurements, the repeatability of MRPS in measuring blood plasma samples was examined., Results: Flow cytometry results show that the size distribution of EVs in Tween 20, in contrast to Poloxamer-188, differs from the control measurements (DPBS and DPBS containing BSA). MRPS results show that Poloxamer-188 improves the precision of sample volume determination compared to BSA and Tween-20, because the IQR of the transit time of EVs in the test sample is 11 μs, which is lower than 56 μs for BSA and 16 μs for Tween-20. Furthermore, the IQR of the transit time of particles in blood samples with Poloxamer-188 are 14, 16, and 14 μs, which confirms the reliability of MRPS measurements., Conclusion: The solution of 0.050% Poloxamer-188 in DPBS does not lyse EVs and results in repeatable and unimpeded MRPS measurements., Competing Interests: The authors report no conflicts of interest., (Copyright: © 2024 Shahsavari et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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21. Fluence is unequal to incident energy density or radiant exposure.
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van Gemert MJC and van Leeuwen TG
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- 2024
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22. Subminute thermal damage to cell types present in the skin.
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Doppegieter M, van Leeuwen TG, van Weert A, Aalders MCG, and Bakker ENTP
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- Humans, Cell Survival radiation effects, Skin pathology, Skin radiation effects, Skin injuries, Keratinocytes
- Abstract
Introduction: Psoriasis is characterized by an increase in the proliferation of keratinocytes and nerve fiber activity, contributing to the typical skin lesions. Pulsed Dye Laser (PDL) treatment is effective for the treatment of psoriatic lesions but its mechanism remains unclear. One hypothesis is that PDL causes thermal damage by the diffusion of heat to neighboring structures in lesional skin. There is limited information on the thermal sensitivity of these neighboring skin cells when exposed to hyperthermia for durations lasting less than a minute. Our study aimed to investigate the cell-specific responses to heat using sub-minute exposure times and moderate to ablative hyperthermia., Materials and Methods: Cultured human endothelial cells, smooth muscle cells, neuronal cells, and keratinocytes were exposed to various time (2-20 sec) and temperature (45-70 °C) combinations. Cell viability was assessed by measuring intracellular ATP content 24 h after thermal exposure and this data was used to calculate fit parameters for the Arrhenius model and CEM43 calculations., Results: Our results show significant differences in cell survival between cell types ( p < 0.0001). Especially within the range of 50-60 °C, survival of neuronal cells and keratinocytes was significantly less than that of endothelial and smooth muscle cells. No statistically significant difference was found in the lethal dose (LT50) of thermal energy between neuronal cells and keratinocytes. However, CEM43 calculations showed significant differences between all four cell types., Conclusion: The results imply that there is a cell-type-dependent sensitivity to thermal damage which suggests that neuronal cells and keratinocytes are particularly susceptible to diffusing heat from laser treatment. Damage to these cells may aid in modulating the neuro-inflammatory pathways in psoriasis. These data provide insight into the potential mechanisms of PDL therapy for psoriasis and advance our understanding of how thermal effects may play a role in its effectiveness.
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- 2024
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23. Accuracy and precision of depth-resolved estimation of attenuation coefficients in optical coherence tomography.
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Neubrand LB, van Leeuwen TG, and Faber DJ
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- Signal-To-Noise Ratio, Tomography, Optical Coherence methods
- Abstract
Significance: Parametric imaging of the attenuation coefficient μ OCT using optical coherence tomography (OCT) is a promising approach for evaluating abnormalities in tissue. To date, a standardized measure of accuracy and precision of μ OCT by the depth-resolved estimation (DRE) method, as an alternative to least squares fitting, is missing., Aim: We present a robust theoretical framework to determine accuracy and precision of the DRE of μ OCT ., Approach: We derive and validate analytical expressions for the accuracy and precision of μ OCT determination by the DRE using simulated OCT signals in absence and presence of noise. We compare the theoretically achievable precisions of the DRE method and the least-squares fitting approach., Results: Our analytical expressions agree with the numerical simulations for high signal-to-noise ratios and qualitatively describe the dependence on noise otherwise. A commonly used simplification of the DRE method results in a systematic overestimation of the attenuation coefficient in the order of μ OCT 2 × Δ , where Δ is the pixel stepsize. When μ OCT · | AFR | ≲ 1.8 , μ OCT is reconstructed with higher precision by the depth-resolved method compared to fitting over the length of an axial fitting range | AFR | ., Conclusions: We derived and validated expressions for the accuracy and precision of DRE of μ OCT . A commonly used simplification of this method is not recommended as being used for OCT-attenuation reconstruction. We give a rule of thumb providing guidance in the choice of estimation method., (© 2023 The Authors.)
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- 2023
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24. Preventing swarm detection in extracellular vesicle flow cytometry: a clinically applicable procedure.
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Buntsma NC, Shahsavari M, Gąsecka A, Nieuwland R, van Leeuwen TG, and van der Pol E
- Abstract
Background: Flow cytometry is commonly used to detect cell-derived extracellular vesicles in body fluids such as blood plasma. However, continuous and simultaneous illumination of multiple particles at or below the detection limit may result in the detection of a single event. This phenomenon is called swarm detection and leads to incorrect particle concentration measurements. To prevent swarm detection, sample dilution is recommended. Since the concentration of particles differs between plasma samples, finding the optimal sample dilution requires dilution series of all samples, which is unfeasible in clinical routine., Objectives: Here we developed a practical procedure to find the optimal sample dilution of plasma for extracellular vesicle flow cytometry measurements in clinical research studies., Methods: Dilution series of 5 plasma samples were measured with flow cytometry (Apogee A60-Micro), triggered on side scatter. The total particle concentration between these plasma samples ranged from 2.5 × 10
9 to 2.1 × 1011 mL-1 ., Results: Swarm detection was absent in plasma samples when diluted ≥1.1 × 103 -fold or at particle count rates <3.0 × 103 events·s-1 . Application of either one of these criteria, however, resulted in insignificant particle counts in most samples. The best approach to prevent swarm detection while maintaining significant particle counts was by combining minimal dilution with maximum count rate., Conclusion: To prevent swarm detection in a series of clinical samples, the measurement count rate of a single diluted plasma sample can be used to determine the optimal dilution factor. For our samples, flow cytometer, and settings, the optimal dilution factor is ≥1.1 × 102 -fold, while the count rate is <1.1 × 104 events·s-1 ., (© 2023 The Authors.)- Published
- 2023
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25. Model for the diffuse reflectance in spatial frequency domain imaging.
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Post AL, Faber DJ, and van Leeuwen TG
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- Optical Imaging methods, Light, Lighting
- Abstract
Significance: In spatial frequency domain imaging (SDFI), tissue is illuminated with sinusoidal intensity patterns at different spatial frequencies. For low spatial frequencies, the reflectance is diffuse and a model derived by Cuccia et al. (doi 10.1117/1.3088140) is commonly used to extract optical properties. An improved model resulting in more accurate optical property extraction could lead to improved diagnostic algorithms., Aim: To develop a model that improves optical property extraction for the diffuse reflectance in SFDI compared to the model of Cuccia et al., Approach: We derive two analytical models for the diffuse reflectance, starting from the theoretical radial reflectance R ( ρ ) for a pencil-beam illumination under the partial current boundary condition (PCBC) and the extended boundary condition (EBC). We compare both models and the model of Cuccia et al. to Monte Carlo simulations., Results: The model based on the PCBC resulted in the lowest errors, improving median relative errors compared to the model of Cuccia et al. by 45% for the reflectance, 10% for the reduced scattering coefficient and 64% for the absorption coefficient., Conclusions: For the diffuse reflectance in SFDI, the model based on the PCBC provides more accurate results than the currently used model by Cuccia et al., (© 2023 The Authors.)
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- 2023
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26. A compendium of single extracellular vesicle flow cytometry.
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Welsh JA, Arkesteijn GJA, Bremer M, Cimorelli M, Dignat-George F, Giebel B, Görgens A, Hendrix A, Kuiper M, Lacroix R, Lannigan J, van Leeuwen TG, Lozano-Andrés E, Rao S, Robert S, de Rond L, Tang VA, Tertel T, Yan X, Wauben MHM, Nolan JP, Jones JC, Nieuwland R, and van der Pol E
- Subjects
- Flow Cytometry methods, Reproducibility of Results, Extracellular Vesicles
- Abstract
Flow cytometry (FCM) offers a multiparametric technology capable of characterizing single extracellular vesicles (EVs). However, most flow cytometers are designed to detect cells, which are larger than EVs. Whereas cells exceed the background noise, signals originating from EVs partly overlap with the background noise, thereby making EVs more difficult to detect than cells. This technical mismatch together with complexity of EV-containing fluids causes limitations and challenges with conducting, interpreting and reproducing EV FCM experiments. To address and overcome these challenges, researchers from the International Society for Extracellular Vesicles (ISEV), International Society for Advancement of Cytometry (ISAC), and the International Society on Thrombosis and Haemostasis (ISTH) joined forces and initiated the EV FCM working group. To improve the interpretation, reporting, and reproducibility of future EV FCM data, the EV FCM working group published an ISEV position manuscript outlining a framework of minimum information that should be reported about an FCM experiment on single EVs (MIFlowCyt-EV). However, the framework contains limited background information. Therefore, the goal of this compendium is to provide the background information necessary to design and conduct reproducible EV FCM experiments. This compendium contains background information on EVs, the interaction between light and EVs, FCM hardware, experimental design and preanalytical procedures, sample preparation, assay controls, instrument data acquisition and calibration, EV characterization, and data reporting. Although this compendium focuses on EVs, many concepts and explanations could also be applied to FCM detection of other particles within the EV size range, such as bacteria, lipoprotein particles, milk fat globules, and viruses., (© 2023 The Authors. Journal of Extracellular Vesicles published by Wiley Periodicals, LLC on behalf of the International Society for Extracellular Vesicles.)
- Published
- 2023
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27. Calibration procedure for enhanced mirror artifact removal in full-range optical coherence tomography using passive quadrature demultiplexing.
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Attendu X, Faber DJ, Lamouche G, van Leeuwen TG, Boudoux C, and Rivard M
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- Calibration, Reproducibility of Results, Artifacts, Tomography, Optical Coherence methods
- Abstract
Significance: Passive quadrature demultiplexing allows full-range optical coherence tomography (FR-OCT). However, imperfections in the wavelength- and frequency-response of the demodulation circuits can cause residual mirror artifacts, which hinder high-quality imaging on both sides of zero delay., Aim: We aim at achieving high mirror artifact extinction by calibrated postprocessing of the FR-OCT signal., Approach: We propose a mathematical framework for the origin of the residual mirror peaks as well as a protocol allowing the precise measurement and correction of the associated errors directly from mirror measurements., Results: We demonstrate high extinction of the mirror artifact over the entire imaging range, as well as an assessment of the method's robustness to time and experimental conditions. We also provide a detailed description of the practical implementation of the method to ensure optimal reproducibility., Conclusion: The proposed method is simple to implement and produces high mirror artifact extinction. This may encourage the adoption of FR-OCT in clinical and industrial systems or loosen the performance requirements on the optical demodulation circuit, as the imperfections can be handled in postprocessing.
- Published
- 2022
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28. Comparison of preprocessing techniques to reduce nontissue-related variations in hyperspectral reflectance imaging.
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Witteveen M, Sterenborg HJCM, van Leeuwen TG, Aalders MCG, Ruers TJM, and Post AL
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- Algorithms, Principal Component Analysis, Spectroscopy, Near-Infrared, Hyperspectral Imaging, Support Vector Machine
- Abstract
Significance: Hyperspectral reflectance imaging can be used in medicine to identify tissue types, such as tumor tissue. Tissue classification algorithms are developed based on, e.g., machine learning or principle component analysis. For the development of these algorithms, data are generally preprocessed to remove variability in data not related to the tissue itself since this will improve the performance of the classification algorithm. In hyperspectral imaging, the measured spectra are also influenced by reflections from the surface (glare) and height variations within and between tissue samples., Aim: To compare the ability of different preprocessing algorithms to decrease variations in spectra induced by glare and height differences while maintaining contrast based on differences in optical properties between tissue types., Approach: We compare eight preprocessing algorithms commonly used in medical hyperspectral imaging: standard normal variate, multiplicative scatter correction, min-max normalization, mean centering, area under the curve normalization, single wavelength normalization, first derivative, and second derivative. We investigate conservation of contrast stemming from differences in: blood volume fraction, presence of different absorbers, scatter amplitude, and scatter slope-while correcting for glare and height variations. We use a similarity metric, the overlap coefficient, to quantify contrast between spectra. We also investigate the algorithms for clinical datasets from the colon and breast., Conclusions: Preprocessing reduces the overlap due to glare and distance variations. In general, the algorithms standard normal variate, min-max, area under the curve, and single wavelength normalization are the most suitable to preprocess data used to develop a classification algorithm for tissue classification. The type of contrast between tissue types determines which of these four algorithms is most suitable.
- Published
- 2022
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29. Precision of attenuation coefficient measurements by optical coherence tomography.
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Neubrand LB, van Leeuwen TG, and Faber DJ
- Subjects
- Least-Squares Analysis, Likelihood Functions, Signal-To-Noise Ratio, Tomography, Optical Coherence methods
- Abstract
Significance: Optical coherence tomography (OCT) is an interferometric imaging modality, which provides tomographic information on the microscopic scale. Furthermore, OCT signal analysis facilitates quantification of tissue optical properties (e.g., the attenuation coefficient), which provides information regarding the structure and organization of tissue. However, a rigorous and standardized measure of the precision of the OCT-derived optical properties, to date, is missing., Aim: We present a robust theoretical framework, which provides the Cramér -Rao lower bound σμOCT for the precision of OCT-derived optical attenuation coefficients., Approach: Using a maximum likelihood approach and Fisher information, we derive an analytical solution for σμOCT when the position and depth of focus are known. We validate this solution, using simulated OCT signals, for which attenuation coefficients are extracted using a least-squares fitting procedure., Results: Our analytical solution is in perfect agreement with simulated data without shot noise. When shot noise is present, we show that the analytical solution still holds for signal-to-noise ratios (SNRs) in the fitting window being above 20 dB. For other cases (SNR<20 dB, focus position not precisely known), we show that the numerical calculation of the precision agrees with the σμOCT derived from simulated signals., Conclusions: Our analytical solution provides a fast, rigorous, and easy-to-use measure for OCT-derived attenuation coefficients for signals above 20 dB. The effect of uncertainties in the focal point position on the precision in the attenuation coefficient, the second assumption underlying our analytical solution, is also investigated by numerical calculation of the lower bounds. This method can be straightforwardly extended to uncertainty in other system parameters.
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- 2022
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30. EDTA stabilizes the concentration of platelet-derived extracellular vesicles during blood collection and handling.
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Buntsma NC, Gąsecka A, Roos YBWEM, van Leeuwen TG, van der Pol E, and Nieuwland R
- Subjects
- Anticoagulants pharmacology, Citrates pharmacology, Citric Acid pharmacology, Edetic Acid pharmacology, Humans, Platelet Activation, Blood Platelets, Extracellular Vesicles
- Abstract
Citrate is the recommended anticoagulant for studies on plasma extracellular vesicles (EVs). Because citrate incompletely blocks platelet activation and the release of platelet-derived EVs, we compared EDTA and citrate in that regard. Blood from healthy individuals (n = 7) was collected and incubated with thrombin receptor-activating peptide-6 (TRAP-6) to activate platelets, subjected to pneumatic tube transportation (n = 6), a freeze-thaw cycle (n = 10), and stored before plasma preparation (n = 6). Concentrations of EVs from platelets (CD61
+ ), activated platelets ( P -selectin+ ), erythrocytes (CD235a+ ), and leukocytes (CD45+ ) were measured by flow cytometry. Concentrations of EVs from platelets and activated platelets increased 1.4-fold and 1.9-fold in EDTA blood upon platelet activation, and 4.2-fold and 9.6-fold in citrate blood. Platelet EV concentrations were unaffected by pneumatic tube transport in EDTA blood but increased in citrate blood, and EV concentrations of erythrocytes and leukocytes were comparable. The stability of EVs during a freeze-thaw cycle was comparable for both anticoagulants. Finally, the concentration of platelet EVs was stable during storage of EDTA blood for six hours, whereas this concentration increased 1.5-fold for citrate blood. Thus, EDTA improves the robustness of studies on plasma EVs.- Published
- 2022
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31. Quantitative Fluorescence Imaging of Perfusion-An Algorithm to Predict Anastomotic Leakage.
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Jansen SM, de Bruin DM, Wilk LS, van Berge Henegouwen MI, Strackee SD, Gisbertz SS, van Bavel ET, and van Leeuwen TG
- Abstract
This study tests fluorescence imaging-derived quantitative parameters for perfusion evaluation of the gastric tube during surgery and correlates these parameters with patient outcomes in terms of anastomotic leakage. Poor fundus perfusion is seen as a major factor for the development of anastomotic leakage and strictures. Fluorescence perfusion imaging may reduce the incidence of complications. Parameters for the quantification of the fluorescence signal are still lacking. Quantitative parameters in terms of maximal intensity, mean slope and influx timepoint were tested for significant differences between four perfusion areas of the gastric tube in 22 patients with a repeated ANOVA test. These parameters were compared with patient outcomes. Maximal intensity, mean slope and influx timepoint were significantly different between the base of the gastric tube and the fundus ( p < 0.0001). Patients who developed anastomotic leakage showed a mean slope of almost 0 in Location 4. The distance of the demarcation of ICG to the fundus was significantly higher in the three patients who developed anastomotic leakage ( p < 0.0001). This study presents quantitative intra-operative perfusion imaging with fluorescence. Quantification of the fluorescence signal allows for early risk stratification of necrosis.
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- 2022
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32. Correction to: A literature review and novel theoretical approach on the optical properties of whole blood.
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Bosschaart N, Edelman GJ, Aalders MCG, van Leeuwen TG, and Faber DJ
- Published
- 2022
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33. Deep Learning-based Recurrence Prediction in Patients with Non-muscle-invasive Bladder Cancer.
- Author
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Lucas M, Jansen I, van Leeuwen TG, Oddens JR, de Bruin DM, and Marquering HA
- Subjects
- Humans, Deep Learning, Urinary Bladder Neoplasms pathology
- Abstract
Background: Non-muscle-invasive bladder cancer (NMIBC) is characterized by frequent recurrence of the disease, which is difficult to predict., Objective: To combine digital histopathology slides with clinical data to predict 1- and 5-yr recurrence-free survival of NMIBC patients using deep learning., Design, Setting, and Participants: Data of patients undergoing a transurethral resection of a bladder tumor between 2000 and 2018 at a Dutch academic medical center were selected. Corresponding histological slides were digitized. A three-step approach was used to predict 1- and 5-yr recurrence-free survival. First, a segmentation network was used to detect the urothelium on the digital histopathology slides. Second, a selection network was trained for the selection of patches associated with recurrence. Third, a classification network, combining the information of the selection network with clinical data, was trained to give the probability of 1- and 5-yr recurrence-free survival., Outcome Measurements and Statistical Analysis: The accuracy of the deep learning-based model was compared with a multivariable logistic regression model using clinical data only., Results and Limitations: In the 1- and 5-yr follow-up cohorts, 359 and 281 patients were included with recurrence rates of 27% and 63%, respectively. The areas under the curve (AUCs) of the model combining digital histopathology slide data with clinical data were 0.62 and 0.76 for 1- and 5-yr recurrence predictions, respectively, which were higher than those of the model using digital histopathology slide data only (AUCs of 0.56 and 0.72, respectively) and the multivariable logistic regression (AUCs of 0.58 and 0.57, respectively)., Conclusions: In our population, the deep learning-based model combining digital histopathology slides and clinical data enhances the prediction of recurrence (within 5 yr) compared with models using clinical data or image data only., Patient Summary: By combining histopathology images and patient record data using deep learning, the prediction of recurrence in bladder cancer patients is enhanced., (Copyright © 2020 European Association of Urology. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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34. Misinterpretation of solid sphere equivalent refractive index measurements and smallest detectable diameters of extracellular vesicles by flow cytometry.
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van der Pol E, van Leeuwen TG, and Yan X
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- Animals, Humans, Extracellular Vesicles chemistry, Extracellular Vesicles metabolism, Flow Cytometry, Microspheres
- Published
- 2021
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35. Computed Tomography-Mediated Registration of Trapeziometacarpal Articular Cartilage Using Intraarticular Optical Coherence Tomography and Cryomicrotome Imaging: A Cadaver Study.
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Cernohorsky P, Strackee SD, Streekstra GJ, van den Wijngaard JP, Spaan JAE, Siebes M, van Leeuwen TG, and de Bruin DM
- Subjects
- Cadaver, Humans, Tomography, Optical Coherence methods, Tomography, X-Ray Computed, Cartilage Diseases, Cartilage, Articular diagnostic imaging
- Abstract
Objective: Accurate, high-resolution imaging of articular cartilage thickness is an important clinical challenge in patients with osteoarthritis, especially in small joints. In this study, computed tomography (CT) mediated catheter-based optical coherence tomography (OCT) was utilized to create a digital reconstruction of the articular surface of the trapeziometacarpal (TMC) joint and to assess cartilage thickness in comparison to cryomicrotome data., Design: Using needle-based introduction of the OCT probe, the articular surface of the TMC joint of 5 cadaver wrists was scanned in different probe positions with matching CT scans to record the intraarticular probe trajectory. Subsequently and based on the acquired CT data, 3-dimensional realignment of the OCT data to the curved intraarticular trajectory was performed for all probe positions. The scanned TMC joints were processed using a cryomicrotome imaging system. Finally, cartilage thickness measurements between OCT and cryomicrotome data were compared., Results: Successful visualization of TMC articular cartilage was performed using OCT. The CT-mediated registration yielded a digital reconstruction of the articular surface on which thickness measurements could be performed. A near-perfect agreement between OCT and cryomicrotome thickness measurements was found ( r
2 = 0.989)., Conclusion: The proposed approach enables 3D reconstruction of the TMC articular surface with subsequent accurate cartilage thickness measurements, encouraging the development of intraarticular cartilage OCT for future (clinical) application.- Published
- 2021
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36. Quantification of Light Scattering Detection Efficiency and Background in Flow Cytometry.
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de Rond L, Coumans FAW, Welsh JA, Nieuwland R, van Leeuwen TG, and van der Pol E
- Subjects
- Scattering, Radiation, Flow Cytometry
- Published
- 2021
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37. Comment on the complex assessment of anastomosis' perfusion following esophagectomy: Set in stone?
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Jansen SM, van Berge Henegouwen MI, Gisbertz SS, and van Leeuwen TG
- Subjects
- Anastomosis, Surgical, Humans, Perfusion, Anastomotic Leak, Esophagectomy
- Abstract
Competing Interests: Declaration of competing interest The authors have no conflict of interests.
- Published
- 2021
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38. Quantitative change of perfusion in gastric tube reconstruction by sidestream dark field microscopy (SDF) after esophagectomy, a prospective in-vivo cohort study.
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Jansen SM, de Bruin DM, van Berge Henegouwen MI, Bloemen PR, Strackee SD, Veelo DP, van Leeuwen TG, and Gisbertz SS
- Subjects
- Adult, Aged, Female, Humans, Male, Middle Aged, Anastomotic Leak etiology, Microcirculation, Pilot Projects, Prospective Studies, Intraoperative Care methods, Esophagectomy adverse effects, Microscopy methods, Perfusion Imaging methods, Plastic Surgery Procedures methods, Stomach blood supply, Stomach surgery
- Abstract
Background: Anastomotic leakage is one of the most severe complications in patients undergoing esophagectomy with gastric tube reconstruction. Transection of the left gastric and gastro-epiploic artery and vein results in compromised perfusion which is seen as the major contributing factor for anastomotic dehiscence. The main objective of this prospective, observational, in-vivo pilot study is to microscopically evaluate gastric tube perfusion with Sidestream Darkfield Microscopy (SDF)., Methods: Intra-operative microscopic images of gastric-microcirculation were obtained with SDF directly after reconstruction in 22 patients. Quantitative perfusion related parameters were: velocity, Microvascular Flow Index(MFI), Total Vessel Density(TVD), Perfusion Vessel Density(PVD), Proportion of Perfused Vessels(PPV) and De Backer Score(DBS). Dedicated software was used to assess parameters predictive for compromised perfusion., Results: SDF was feasible to accurately visualize and evaluate microcirculation in all patients. Velocity(μm/sec) was significantly decreased towards the fundus (p = 0.001). MFI, PVD and PVD were decreased distal of the watershed - between the right and left gastro-epiploic artery and vein - and in the fundus, compared to the base of the gastric tube(p = 0.0002). No differences in TVD and DBS were observed; because of vessel-dilation in the fundus-area. This suggests that venous congestion results in comprised inflow of oxygen rich blood and plays a role in the development of ischaemia., Conclusion: We present quantitative perfusion imaging with SDF of the gastric tube. Velocity, MFI, TVD and PPV are accurate parameters to observe perfusion decrease. Also, venous congestion is visible in the fundus, suggesting an important role in the development of ischaemia. These parameters could allow early risk stratification, and, potentially, can accomplish a reduction in anastomotic leakage., Competing Interests: Declaration of competing interest The authors have no conflict of interests., (Copyright © 2020. Published by Elsevier Ltd.)
- Published
- 2021
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39. The compatibility of immunolabeling with STR profiling.
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Achetib N, van Weert A, Birkl M, van Leeuwen TG, Aalders MCG, and van Dam A
- Subjects
- Female, Fixatives, Formaldehyde, Humans, Male, Methanol, Pilot Projects, Polymerase Chain Reaction, DNA Fingerprinting, Dermatoglyphics, Immunohistochemistry, Microsatellite Repeats
- Abstract
Immunolabeling is a technique, which has recently been introduced to enhance the quality of developed fingermarks and subsequently strengthen the evidential value. The effect of this method on subsequent DNA analysis, however, has not been explored yet. Therefore, the current pilot study aimed to determine whether STR profiling is possible after immunolabeling. Since immunolabeling involves washing steps which could reduce DNA quantities, the use of different fixatives including methanol, formaldehyde and universal molecular fixative (UMFIX) were investigated. STR profiles from the (immunolabeled) fingermarks were generated after four days and four weeks by a direct PCR method to enable comparison of relatively fresh and old fingermarks. The fingermarks were deposited on diverse forensically relevant substrates, including glass, metal and tile. STR profiles could be recovered for all tested fixatives with no significant difference in performance. However, the mean number of detected alleles was the highest when methanol was used for fixation. Furthermore, immunolabeling on aged fingermarks (4 weeks) was also possible, but the number of detected alleles showed a non-significant decrease. DNA could be recovered from deposits on all substrates, of which glass showed the highest mean number of detected alleles followed by metal and tile., (Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2021
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40. Toward improved endoscopic surveillance with multidiameter single fiber reflectance spectroscopy in patients with Barrett's esophagus.
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Post AL, de Groof AJ, Zhang XU, Swager AF, Fockens KN, Pouw RE, Weusten BLAM, Faber DJ, de Bruin DM, Bergman JJGHM, van Leeuwen TG, Sterenborg HJCM, and Curvers WL
- Subjects
- Esophagoscopy, Humans, Spectrum Analysis, Barrett Esophagus diagnostic imaging, Esophageal Neoplasms diagnostic imaging
- Abstract
Patients with Barrett's esophagus are at an increased risk to develop esophageal cancer and, therefore, undergo regular endoscopic surveillance. Early detection of neoplasia enables endoscopic treatment, which improves outcomes. However, early Barrett's neoplasia is easily missed during endoscopic surveillance. This study investigates multidiameter single fiber reflectance spectroscopy (MDSFR) to improve Barrett's surveillance. Based on the concept of field cancerization, it may be possible to identify the presence of a neoplastic lesion from measurements elsewhere in the esophagus or even the oral cavity. In this study, MDSFR measurements are performed on non-dysplastic Barrett's mucosa, squamous mucosa, oral mucosa, and the neoplastic lesion (if present). Based on logistic regression analysis on the scattering parameters measured by MDSFR, a classifier is developed that can predict the presence of neoplasia elsewhere in the Barrett's segment from measurements on the non-dysplastic Barrett's mucosa (sensitivity 91%, specificity 71%, AUC = 0.77). Classifiers obtained from logistic regression analysis for the squamous and oral mucosa do not result in an AUC significantly different from 0.5., (© 2021 Wiley-VCH GmbH.)
- Published
- 2021
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41. Experimental validation of a recently developed model for single-fiber reflectance spectroscopy.
- Author
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Post AL, Faber DJ, Sterenborg HJCM, and van Leeuwen TG
- Subjects
- Phantoms, Imaging, Spectrum Analysis
- Abstract
Significance: We recently developed a model for the reflectance measured with (multi-diameter) single-fiber reflectance (SFR) spectroscopy as a function of the reduced scattering coefficient μs', the absorption coefficient μa, and the phase function parameter psb. We validated this model with simulations., Aim: We validate our model experimentally. To prevent overfitting, we investigate the wavelength-dependence of psb and propose a parametrization with only three parameters. We also investigate whether this parametrization enables measurements with a single fiber, as opposed to multiple fibers used in multi-diameter SFR (MDSFR)., Approach: We validate our model on 16 phantoms with two concentrations of Intralipid-20% (μs'=13 and 21 cm - 1 at 500 nm) and eight concentrations of Evans Blue (μa = 1 to 20 cm - 1 at 605 nm). We parametrize psb as 10 - 5 · ( p1 ( λ / 650 ) + p2(λ/650)2 + p3(λ/650)3 ) ., Results: Average errors were 7% for μs', 11% for μa, and 16% with the parametrization of psb; and 7%, 17%, and 16%, respectively, without. The parametrization of psb improved the fit speed 25 times (94 s to <4 s). Average errors for only one fiber were 50%, 33%, and 186%, respectively., Conclusions: Our recently developed model provides accurate results for MDSFR measurements but not for a single fiber. The psb parametrization prevents overfitting and speeds up the fit.
- Published
- 2021
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42. Bayesian analysis of depth resolved OCT attenuation coefficients.
- Author
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Fiske LD, Aalders MCG, Almasian M, van Leeuwen TG, Katsaggelos AK, Cossairt O, and Faber DJ
- Abstract
Optical coherence tomography (OCT) is an optical technique which allows for volumetric visualization of the internal structures of translucent materials. Additional information can be gained by measuring the rate of signal attenuation in depth. Techniques have been developed to estimate the rate of attenuation on a voxel by voxel basis. This depth resolved attenuation analysis gives insight into tissue structure and organization in a spatially resolved way. However, the presence of speckle in the OCT measurement causes the attenuation coefficient image to contain unrealistic fluctuations and makes the reliability of these images at the voxel level poor. While the distribution of speckle in OCT images has appeared in literature, the resulting voxelwise corruption of the attenuation analysis has not. In this work, the estimated depth resolved attenuation coefficient from OCT data with speckle is shown to be approximately exponentially distributed. After this, a prior distribution for the depth resolved attenuation coefficient is derived for a simple system using statistical mechanics. Finally, given a set of depth resolved estimates which were made from OCT data in the presence of speckle, a posterior probability distribution for the true voxelwise attenuation coefficient is derived and a Bayesian voxelwise estimator for the coefficient is given. These results are demonstrated in simulation and validated experimentally.
- Published
- 2021
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43. Subdiffuse scattering and absorption model for single fiber reflectance spectroscopy.
- Author
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Post AL, Faber DJ, Sterenborg HJCM, and van Leeuwen TG
- Abstract
Single fiber reflectance (SFR) spectroscopy is a technique that is sensitive to small-scale changes in tissue. An additional benefit is that SFR measurements can be performed through endoscopes or biopsy needles. In SFR spectroscopy, a single fiber emits and collects light. Tissue optical properties can be extracted from SFR spectra and related to the disease state of tissue. However, the model currently used to extract optical properties was derived for tissues with modified Henyey-Greenstein phase functions only and is inadequate for other tissue phase functions. Here, we will present a model for SFR spectroscopy that provides accurate results for a large range of tissue phase functions, reduced scattering coefficients, and absorption coefficients. Our model predicts the reflectance with a median error of 5.6% compared to 19.3% for the currently used model. For two simulated tissue spectra, our model fit provides accurate results., Competing Interests: The authors declare no conflicts of interest., (© 2020 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.)
- Published
- 2020
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44. Limitations of Dutch Growth Research Foundation Commercial Software Weight Velocity for Age Standard Deviation Score.
- Author
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Van Gemert MJC, Vlaming M, Köseoğlu B, Bruijninckx CMA, Van Leeuwen TG, Neumann MHA, and Sauer PJJ
- Subjects
- Child, Child, Preschool, Humans, Infant, Male, Software
- Abstract
BACKGROUND The commercial software for hospitals, Weight Velocity for Age Standard Deviation Score (SDSWVA), claims to document the growth and development of children, although published details are unavailable. The statistics-derived parameter SDSWVA includes the weight velocity at age t, WV(t) (weight gained between t and (t-1.23) years, divided by 1.23), and 3 standard weight velocity curves at average age AA, defined as AA=t-1.23/2 years. SDSWVA denotes the number of standard deviations that WV(t) deviates from the 0 SD weight velocity at AA. WV(t) yielded erroneous outcomes when applied to weights of a seriously underweight boy with an allergy to cows' milk who showed strong weight growth after being fed on food free of cows' milk. The SDSWVA software tacitly suggests that it is more accurate than WV(t). CASE REPORT The case of this boy was previously described in this Journal. Using SDSWVA(t,AA) software, his weight growth was analyzed by his third pediatrician, beginning at age 1.5 years. The diagnosis of the mother with Pediatric Condition Falsification was confirmed, adding 6 months to foster care, which totalled 8.5 months. Testing of the SDSWVA software on the boy's weight curve yielded results that were complex, nontransparent, and as erroneous as WV(t), explaining the misdiagnosis by the third pediatrician. CONCLUSIONS SDSWVA software should not be used for children under 3 years and during variable weight behavior. Erroneous performance, unpublished details, and an error identified in their new but untested software make the Dutch Growth Research Foundation unlikely to meet the 2020 European Union regulations for in vitro medical devices.
- Published
- 2020
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45. Automated Detection and Grading of Non-Muscle-Invasive Urothelial Cell Carcinoma of the Bladder.
- Author
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Jansen I, Lucas M, Bosschieter J, de Boer OJ, Meijer SL, van Leeuwen TG, Marquering HA, Nieuwenhuijzen JA, de Bruin DM, and Savci-Heijink CD
- Subjects
- Humans, Carcinoma, Transitional Cell pathology, Deep Learning, Neoplasm Grading methods, Pathology, Clinical methods, Urinary Bladder Neoplasms pathology
- Abstract
Accurate grading of non-muscle-invasive urothelial cell carcinoma is of major importance; however, high interobserver variability exists. A fully automated detection and grading network based on deep learning is proposed to enhance reproducibility. A total of 328 transurethral resection specimens from 232 patients were included, and a consensus reading by three specialized pathologists was used. The slides were digitized, and the urothelium was annotated by expert observers. The U-Net-based segmentation network was trained to automatically detect urothelium. This detection was used as input for the classification network. The classification network aimed to grade the tumors according to the World Health Organization grading system adopted in 2004. The automated grading was compared with the consensus and individual grading. The segmentation network resulted in an accurate detection of urothelium. The automated grading shows moderate agreement (κ = 0.48 ± 0.14 SEM) with the consensus reading. The agreement among pathologists ranges between fair (κ = 0.35 ± 0.13 SEM and κ = 0.38 ± 0.11 SEM) and moderate (κ = 0.52 ± 0.13 SEM). The automated classification correctly graded 76% of the low-grade cancers and 71% of the high-grade cancers according to the consensus reading. These results indicate that deep learning can be used for the fully automated detection and grading of urothelial cell carcinoma., (Copyright © 2020 American Society for Investigative Pathology. Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
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46. Cancer-ID: Toward Identification of Cancer by Tumor-Derived Extracellular Vesicles in Blood.
- Author
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Rikkert LG, Beekman P, Caro J, Coumans FAW, Enciso-Martinez A, Jenster G, Le Gac S, Lee W, van Leeuwen TG, Loozen GB, Nanou A, Nieuwland R, Offerhaus HL, Otto C, Pegtel DM, Piontek MC, van der Pol E, de Rond L, Roos WH, Schasfoort RBM, Wauben MHM, Zuilhof H, and Terstappen LWMM
- Abstract
Extracellular vesicles (EVs) have great potential as biomarkers since their composition and concentration in biofluids are disease state dependent and their cargo can contain disease-related information. Large tumor-derived EVs (tdEVs, >1 μm) in blood from cancer patients are associated with poor outcome, and changes in their number can be used to monitor therapy effectiveness. Whereas, small tumor-derived EVs (<1 μm) are likely to outnumber their larger counterparts, thereby offering better statistical significance, identification and quantification of small tdEVs are more challenging. In the blood of cancer patients, a subpopulation of EVs originate from tumor cells, but these EVs are outnumbered by non-EV particles and EVs from other origin. In the Dutch NWO Perspectief Cancer-ID program, we developed and evaluated detection and characterization techniques to distinguish EVs from non-EV particles and other EVs. Despite low signal amplitudes, we identified characteristics of these small tdEVs that may enable the enumeration of small tdEVs and extract relevant information. The insights obtained from Cancer-ID can help to explore the full potential of tdEVs in the clinic., (Copyright © 2020 Rikkert, Beekman, Caro, Coumans, Enciso-Martinez, Jenster, Le Gac, Lee, van Leeuwen, Loozen, Nanou, Nieuwland, Offerhaus, Otto, Pegtel, Piontek, van der Pol, de Rond, Roos, Schasfoort, Wauben, Zuilhof and Terstappen.)
- Published
- 2020
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47. Detection of extracellular vesicles in plasma and urine of prostate cancer patients by flow cytometry and surface plasmon resonance imaging.
- Author
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Rikkert LG, de Rond L, van Dam A, van Leeuwen TG, Coumans FAW, de Reijke TM, Terstappen LWMM, and Nieuwland R
- Subjects
- Adenocarcinoma blood, Adenocarcinoma urine, Aged, Aged, 80 and over, Antigens, Surface blood, Biomarkers, Tumor, Cell Line, Tumor, Culture Media, Conditioned, Extracellular Vesicles chemistry, Humans, Male, Milk Proteins blood, Neoplasm Proteins blood, Neoplasm Proteins urine, Pilot Projects, Prostatic Neoplasms, Castration-Resistant pathology, Adenocarcinoma secondary, Extracellular Vesicles metabolism, Flow Cytometry methods, Prostatic Neoplasms, Castration-Resistant blood, Prostatic Neoplasms, Castration-Resistant urine, Surface Plasmon Resonance methods
- Abstract
Large (> 1 μm) tumor-derived extracellular vesicles (tdEVs) enriched from the cell fraction of centrifuged whole blood are prognostic in metastatic castration-resistant prostate cancer (mCRPC) patients. However, the highest concentration of tdEVs is expected in the cell-free plasma fraction. In this pilot study, we determine whether mCRPC patients can be discriminated from healthy controls based on detection of tdEVs (< 1μm, EpCAM+) and/or other EVs, in cell-free plasma and/or urine. The presence of marker+ EVs in plasma and urine samples from mCRPC patients (n = 5) and healthy controls (n = 5) was determined by flow cytometry (FCM) and surface plasmon resonance imaging (SPRi) using an antibody panel and lactadherin. For FCM, the concentrations of marker positive (+) particles and EVs (refractive index <1.42) were determined. Only the lactadherin+ particle and EV concentration in plasma measured by FCM differed significantly between patients and controls (p = 0.017). All other markers did not result in signals exceeding the background on both FCM and SPRi, or did not differ significantly between patients and controls. In conclusion, no difference was found between patients and controls based on the detection of tdEVs. For FCM, the measured sample volumes are too small to detect tdEVs. For SPRi, the concentration of tdEVs is probably too low to be detected. Thus, to detect tdEVs in cell-free plasma and/or urine, EV enrichment and/or concentration is required. Furthermore, we recommend testing other markers and/or a combination of markers to discriminate mCRPC patients from healthy controls., Competing Interests: I have read the journal's policy and the authors of this manuscript have the following competing interests: Frank Coumans is majority shareholder in Exometry, Amsterdam, The Netherlands. This does not alter our adherence to PLOS ONE policies on sharing data and materials.
- Published
- 2020
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48. A Systematic Approach to Improve Scatter Sensitivity of a Flow Cytometer for Detection of Extracellular Vesicles.
- Author
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de Rond L, van der Pol E, Bloemen PR, Van Den Broeck T, Monheim L, Nieuwland R, van Leeuwen TG, and Coumans FAW
- Subjects
- Flow Cytometry, Light, Polystyrenes, Extracellular Vesicles
- Abstract
Extracellular vesicles (EVs) are commonly studied by flow cytometry. Due to their small size and low refractive index, the scatter intensity of most EVs is below the detection limit of common flow cytometers. Here, we aim to improve forward scatter (FSC) and side scatter (SSC) sensitivity of a common flow cytometer to detect single 100 nm EVs. The effects of the optical and fluidics configuration on scatter sensitivity of a FACSCanto (Becton Dickinson) were evaluated by the separation index (SI) and robust coefficient of variation (rCV) of polystyrene beads (BioCytex). Improvement is defined as increased SI and/or reduced rCV. Changing the obscuration bar improved the rCV 1.9-fold for FSC. A 10-fold increase in laser power improved the SI 19-fold for FSC and 4.4-fold for SSC, whereas the rCV worsened 0.8-fold and improved 1.5-fold, respectively. Confocalization worsened the SI 1.2-fold for FSC, and improved the SI 5.1-fold for SSC, while the rCV improved 1.1-fold and worsened 1.5-fold, respectively. Replacing the FSC photodiode with a photomultiplier tube improved the SI 66-fold and rCV 4.2-fold. A 2-fold reduction in sample stream width improved both SI and rCV for FSC by 1.8-fold, and for SSC by 1.3- and 2.2-fold, respectively. Decreasing the sample flow velocity worsened rCVs. Decreasing the flow channel dimensions and the pore size of the sheath filter did not substantially change the SI or rCV. Using the optimal optical configuration and fluidics settings, the SI improved 3.8∙10
4 -fold on FSC and 30-fold on SSC, resulting in estimated detection limits for EVs (assuming a refractive index of 1.40) of 246 and 91 nm on FSC and SSC, respectively. Although a 50-fold improvement on FSC is still necessary, these adaptions have produced an operator-friendly, high-throughput flow cytometer with a high sensitivity on both SSC and FSC. © 2020 The Authors. Cytometry Part A published by Wiley Periodicals, Inc. on behalf of International Society for Advancement of Cytometry., (© 2020 The Authors. Cytometry Part A published by Wiley Periodicals, Inc. on behalf of International Society for Advancement of Cytometry.)- Published
- 2020
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49. En-face optical coherence tomography for the detection of cancer in prostatectomy specimens: Quantitative analysis in 20 patients.
- Author
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Swaan A, Muller BG, Wilk LS, Almasian M, Zwartkruis ECH, Rozendaal LR, de Bruin DM, Faber DJ, van Leeuwen TG, and van Herk MB
- Subjects
- Face, Humans, Male, Prostatectomy, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms surgery, Tomography, Optical Coherence
- Abstract
The increase histopathological evaluation of prostatectomy specimens rises the workload on pathologists. Automated histopathology systems, preferably directly on unstained specimens, would accelerate the pathology workflow. In this study, we investigate the potential of quantitative analysis of optical coherence tomography (OCT) to separate benign from malignant prostate tissue automatically. Twenty fixated prostates were cut, from which 54 slices were scanned by OCT. Quantitative OCT metrics (attenuation coefficient, residue, goodness-of-fit) were compared for different tissue types, annotated on the histology slides. To avoid misclassification, the poor-quality slides, and edges of annotations were excluded. Accurate registration of OCT data with histology was achieved in 31 slices. After removing outliers, 56% of the OCT data was compared with histopathology. The quantitative data could not separate malignant from benign tissue. Logistic regression resulted in malignant detection with a sensitivity of 0.80 and a specificity of 0.34. Quantitative OCT analysis should be improved before clinical use., (© 2020 The Authors. Journal of Biophotonics published by WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2020
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50. Analytical model for diffuse reflectance in single fiber reflectance spectroscopy.
- Author
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Faber DJ, Post AL, Sterenborg HJCM, and Van Leeuwen TG
- Abstract
Cancer progression leads to changing scattering properties of affected tissues. Single fiber reflectance (SFR) spectroscopy detects these changes at small spatial scales, making it a promising tool for early in situ detection. Despite its simplicity and versatility, SFR signal modeling is hugely complicated so that, presently, only approximate models exist. We use a classic approach from geometrical probability to derive accurate analytical expressions for diffuse reflectance in SFR that shows a strong improvement over existing models. We consider the case of limited collection efficiency and the presence of absorption. A Monte Carlo light transport study demonstrates that we adequately describe the contribution of diffuse reflectance to the SFR signal. Additional steps are required to include semi-ballistic, non-diffuse reflectance also present in the SFR measurement.
- Published
- 2020
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