68 results on '"tumor protein"'
Search Results
2. Investigating the Impact of Phenolic and Terpene Fractions extracted from Prunus arabica on p53 Protein Expression in AMJ13 and SK-GT-4 Human Cancer Cell Lines.
- Author
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Mahmood, Matin A., Abd, Abdulkareem H., and Kadhim, Enas J.
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PRUNUS ,PROTEIN expression ,P53 protein ,CELL lines ,CANCER in women ,TUMOR proteins - Abstract
Breast cancer is the most frequently diagnosed cancer in women, accounting for a quarter of all cases. The burden of cancer in transitional countries is rising. An esophageal cancer diagnosis typically carries a poor prognosis, as well as a high incidence and mortality rate. Apoptosis, angiogenesis, and tumorigenesis are all controlled by the tumor suppressor protein p53. In clinical oncology, many researchers revealed promising effective phytotherapy methods for cancer patients, compared to antitumor xenobiotics. Study objectives were to study the mechanism of cytotoxicity of the phenolic fraction from Prunus arabica on breast cancer (AMJ13) and Oesophagus adenocarcinoma cancer (SK-GT-4) cell lines by measuring human tumor protein (p53) expression. Cells were treated with the half maximal inhibitory concentration (IC50) concentrations for each compound, then cells were collected with trypsinization and centrifuged. Cell precipitate was lysed using lysis buffer. The supernatant protein concentration was determined by Bicinchoninic Acid (BCA) procedure, finally p53 expression assayed using an Enzyme-Linked Immunosorbent Assay kit (ELISA). Phenolic fraction showed a significance increase in p53 protein expression on both AMJ13 and SK-GT-4 cancer cell lines (p value <0.05) while terpene fraction did not show any significance in both cell lines in comparison to untreated control group (p value<0.05). Phenolic fractions augment p53 expression giving a mechanistic insight into the fraction's cytotoxic attributes. Consequently, the terpene fraction serves as a potent anticancer agent through an alternate mechanism. The findings of this study offer a novel understanding of the biological functions of the phenolic fraction in relation to cancer therapy. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
3. The structure of an Hsp90-immunophilin complex reveals cochaperone recognition of the client maturation state
- Author
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Lee, Kanghyun, Thwin, Aye C, Nadel, Cory M, Tse, Eric, Gates, Stephanie N, Gestwicki, Jason E, and Southworth, Daniel R
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Biochemistry and Cell Biology ,Biological Sciences ,Underpinning research ,1.1 Normal biological development and functioning ,Amino Acid Sequence ,Binding Sites ,Biomarkers ,Tumor ,Cryoelectron Microscopy ,HSP90 Heat-Shock Proteins ,Humans ,Molecular Chaperones ,Molecular Conformation ,Protein Binding ,Tacrolimus Binding Proteins ,Tumor Protein ,Translationally-Controlled 1 ,FKBP51 ,Hsp90 ,cryo-electron microscopy ,heat shock proteins ,immunophilins ,molecular chaperones ,p23 ,peptidyl-prolyl isomerase ,Medical and Health Sciences ,Developmental Biology ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
The Hsp90 chaperone promotes folding and activation of hundreds of client proteins in the cell through an ATP-dependent conformational cycle guided by distinct cochaperone regulators. The FKBP51 immunophilin binds Hsp90 with its tetratricopeptide repeat (TPR) domain and catalyzes peptidyl-prolyl isomerase (PPIase) activity during folding of kinases, nuclear receptors, and tau. Here we determined the cryoelectron microscopy (cryo-EM) structure of the human Hsp90:FKBP51:p23 complex to 3.3 Å, which, together with mutagenesis and crosslinking analyses, reveals the basis for cochaperone binding to Hsp90 during client maturation. A helix extension in the TPR functions as a key recognition element, interacting across the Hsp90 C-terminal dimer interface presented in the closed, ATP conformation. The PPIase domain is positioned along the middle domain, adjacent to Hsp90 client binding sites, whereas a single p23 makes stabilizing interactions with the N-terminal dimer. With this architecture, FKBP51 is positioned to act on specific client residues presented during Hsp90-catalyzed remodeling.
- Published
- 2021
4. Brown Spider (Loxosceles) Venom Toxins as Potential Biotools for the Development of Novel Therapeutics
- Author
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Chaves-Moreira, Daniele, Matsubara, Fernando Hitomi, Schemczssen-Graeff, Zelinda, De Bona, Elidiana, Heidemann, Vanessa Ribeiro, Guerra-Duarte, Clara, Gremski, Luiza Helena, Chávez-Olórtegui, Carlos, Senff-Ribeiro, Andrea, Chaim, Olga Meiri, Arni, Raghuvir Krishnaswamy, and Veiga, Silvio Sanches
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Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Analgesics ,Animals ,Anti-Inflammatory Agents ,Antineoplastic Agents ,Humans ,Immunotherapy ,Insecticides ,Neuroprotective Agents ,Peptides ,Phosphoric Diester Hydrolases ,Recombinant Proteins ,Serine Proteinase Inhibitors ,Spider Venoms ,Tumor Protein ,Translationally-Controlled 1 ,brown spider ,venom ,Loxosceles ,toxins ,biotools ,drug targets ,novel therapeutics ,Biochemistry and Cell Biology ,Pharmacology and pharmaceutical sciences - Abstract
Brown spider envenomation results in dermonecrosis with gravitational spreading characterized by a marked inflammatory reaction and with lower prevalence of systemic manifestations such as renal failure and hematological disturbances. Several toxins make up the venom of these species, and they are mainly peptides and proteins ranging from 5-40 kDa. The venoms have three major families of toxins: phospholipases-D, astacin-like metalloproteases, and the inhibitor cystine knot (ICK) peptides. Serine proteases, serpins, hyaluronidases, venom allergens, and a translationally controlled tumor protein (TCTP) are also present. Toxins hold essential biological properties that enable interactions with a range of distinct molecular targets. Therefore, the application of toxins as research tools and clinical products motivates repurposing their uses of interest. This review aims to discuss possibilities for brown spider venom toxins as putative models for designing molecules likely for therapeutics based on the status quo of brown spider venoms. Herein, we explore new possibilities for the venom components in the context of their biochemical and biological features, likewise their cellular targets, three-dimensional structures, and mechanisms of action.
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- 2019
5. TCTP from Loxosceles Intermedia (Brown Spider) Venom Contributes to the Allergic and Inflammatory Response of Cutaneous Loxoscelism
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Boia-Ferreira, Marianna, Moreno, Kamila G, Basílio, Alana BC, da Silva, Lucas P, Vuitika, Larissa, Soley, Bruna, Wille, Ana Carolina M, Donatti, Lucélia, Barbaro, Katia C, Chaim, Olga M, Gremski, Luiza Helena, Veiga, Silvio S, and Senff-Ribeiro, Andrea
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Biomedical and Clinical Sciences ,Clinical Sciences ,2.1 Biological and endogenous factors ,Aetiology ,Inflammatory and immune system ,Animals ,Biomarkers ,Tumor ,Cimetidine ,Cromolyn Sodium ,Dose-Response Relationship ,Drug ,Hypersensitivity ,Inflammation ,Injections ,Intraperitoneal ,Injections ,Intravenous ,Mast Cells ,Mice ,Phosphoric Diester Hydrolases ,Piperidines ,Promethazine ,Rabbits ,Rats ,Skin Diseases ,Spider Venoms ,Tumor Cells ,Cultured ,Tumor Protein ,Translationally-Controlled 1 ,Loxosceles ,brown spider ,TCTP ,venom ,toxin ,HRF ,Biological sciences ,Biomedical and clinical sciences - Abstract
LiTCTP is a toxin from the Translationally Controlled Tumor Protein (TCTP) family identified in Loxosceles brown spider venoms. These proteins are known as histamine-releasing factors (HRF). TCTPs participate in allergic and anaphylactic reactions, which suggest their potential role as therapeutic targets. The histaminergic effect of TCTP is related to its pro-inflammatory functions. An initial characterization of LiTCTP in animal models showed that this toxin can increase the microvascular permeability of skin vessels and induce paw edema in a dose-dependent manner. We evaluated the role of LiTCTP in vitro and in vivo in the inflammatory and allergic aspects that undergo the biological responses observed in Loxoscelism, the clinical condition after an accident with Loxosceles spiders. Our results showed LiTCTP recombinant toxin (LiRecTCTP) as an essential synergistic factor for the dermonecrotic toxin actions (LiRecDT1, known as the main toxin in the pathophysiology of Loxoscelism), revealing its contribution to the exacerbated inflammatory response clinically observed in envenomated patients.
- Published
- 2019
6. Real-time quantitative PCR with SYBR Green I detection for estimating copy numbers of nine drug resistance candidate genes in Plasmodium falciparum
- Author
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Ferreira, Isabel D, do Rosário, Virgílio E, and Cravo, Pedro VL
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Vector-Borne Diseases ,Malaria ,Biotechnology ,Antimicrobial Resistance ,Rare Diseases ,Genetics ,Development of treatments and therapeutic interventions ,5.1 Pharmaceuticals ,Infection ,Good Health and Well Being ,Animals ,Benzothiazoles ,Biomarkers ,Tumor ,DNA Primers ,DNA ,Protozoan ,Diamines ,Drug Resistance ,Fluorescent Dyes ,Gene Dosage ,Genes ,MDR ,Glutathione Reductase ,Humans ,Organic Chemicals ,Plasmodium falciparum ,Polymerase Chain Reaction ,Quinolines ,Reproducibility of Results ,Sarcoplasmic Reticulum Calcium-Transporting ATPases ,Sensitivity and Specificity ,Tumor Protein ,Translationally-Controlled 1 ,Microbiology ,Medical Microbiology ,Public Health and Health Services ,Tropical Medicine - Abstract
BackgroundEvaluating copy numbers of given genes in Plasmodium falciparum parasites is of major importance for laboratory-based studies or epidemiological surveys. For instance, pfmdr1 gene amplification has been associated with resistance to quinine derivatives and several genes involved in anti-oxidant defence may play an important role in resistance to antimalarial drugs, although their potential involvement has been overlooked.MethodsThe DeltaDeltaCt method of relative quantification using real-time quantitative PCR with SYBR Green I detection was adapted and optimized to estimate copy numbers of three genes previously indicated as putative candidates of resistance to quinolines and artemisinin derivatives: pfmdr1, pfatp6 (SERCA) and pftctp, and in six further genes involved in oxidative stress responses.ResultsUsing carefully designed specific RT-qPCR oligonucleotides, the methods were optimized for each gene and validated by the accurate measure of previously known number of copies of the pfmdr1 gene in the laboratory reference strains P. falciparum 3D7 and Dd2. Subsequently, Standard Operating Procedures (SOPs) were developed to the remaining genes under study and successfully applied to DNA obtained from dried filter blood spots of field isolates of P. falciparum collected in São Tomé & Principe, West Africa.ConclusionThe SOPs reported here may be used as a high throughput tool to investigate the role of these drug resistance gene candidates in laboratory studies or large scale epidemiological surveys.
- Published
- 2006
7. No evidence for linkage of liability to autism to HOXA1 in a sample from the CPEA network
- Author
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Devlin, Bernie, Bennett, Pamela, Cook, Edwin H, Dawson, Geraldine, Gonen, David, Grigorenko, Elena L, McMahon, William, Pauls, David, Smith, Moyra, Spence, M Anne, Network, CPEA Genetics, and Schellenberg, Gerard D
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Epidemiology ,Biological Sciences ,Health Sciences ,Genetics ,Mental Health ,Brain Disorders ,Intellectual and Developmental Disabilities (IDD) ,Autism ,Clinical Research ,Asperger Syndrome ,Autistic Disorder ,Child ,Child Development Disorders ,Pervasive ,Female ,Genetic Predisposition to Disease ,Genetic Variation ,Homeodomain Proteins ,Humans ,Linkage Disequilibrium ,Male ,Neoplasm Proteins ,Nuclear Family ,Phenotype ,Polymorphism ,Genetic ,Transcription Factors ,autism ,HOXA1 ,Asperger syndrome ,pervasive developmental disorder ,genetic association ,autistic disorder ,Collaborative Programs of Excellence in Autism (CPEA) Genetics Network ,Autistic disorder ,Genetic association ,Pervasive developmental disorder ,allele ,article ,calculation ,controlled study ,developmental disorder ,disease transmission ,female ,gene isolation ,genetic linkage ,genotype ,health program ,heritability ,homozygote ,hoxa1 gene ,human ,major clinical study ,male ,priority journal ,sampling ,child ,clinical trial ,gene linkage disequilibrium ,genetic polymorphism ,genetic predisposition ,genetic variability ,genetics ,multicenter study ,nuclear family ,phenotype ,Human ,Polymorphism ,Support ,Non-U.S. Gov't ,Support ,U.S. Gov't ,P.H.S. ,Variation ,homeobox A1 protein ,homeodomain protein ,transcription factor ,tumor protein ,Clinical Sciences ,Clinical sciences - Abstract
A recent study by Ingram et al. [2000b: Teratology 62:393-405] suggests a (His)73(Arg) polymorphism (A:G) in HOXA1 contributes substantially to a liability for autism. Using 68 individuals diagnosed with Autism Spectrum Disorders, they found a significant dearth of G homozygotes and biased transmission of G alleles from parents to affected offspring, especially from mothers. Because the connection between HOXA1 and liability to autism is compelling, we attempted to replicate their finding using a larger, independent sample from the Collaborative Programs of Excellence in Autism (CPEA) network. In our data, genotype frequencies conform to Hardy-Weinberg equilibrium; allele transmissions meet Mendelian expectations; and there is no obvious sex-biased allele transmission. Based on our sample size, calculations suggest that we would have at least 95% power to detect linkage and association even if the A:G polymorphism were to account for only 1% of the heritability of autism. Therefore, although we cannot exclude the possibility that the samples in the two studies are intrinsically different, our data from our sample argue against a major role for HOXA1 (His)73(Arg) in liability to autism.
- Published
- 2002
8. Co-mutation of TP53 and TTN is Correlated with the Efficacy of Immunotherapy in Lung Squamous Cell Carcinoma.
- Author
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Ying K, Zou L, Wang D, Wang R, and Qian J
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- Humans, Biomarkers, Tumor genetics, Mutation, Immunotherapy, Tumor Suppressor Protein p53 genetics, Lung Neoplasms genetics, Lung Neoplasms immunology, Lung Neoplasms therapy, Carcinoma, Squamous Cell genetics, Carcinoma, Squamous Cell therapy, Carcinoma, Squamous Cell immunology, Connectin genetics, Connectin immunology
- Abstract
Background: Immunotherapy has been a promising treatment in advanced lung cancer. However, only a few patients could benefit from it. Herein, we aimed to explore mutationrelated predictive biomarkers in lung squamous cell carcinoma (LUSC), which could help develop clinical immunotherapy strategies and screen beneficial populations., Methods: Co-occurrence and mutually exclusive analysis was conducted on the TCGA-LUSC cohort. Correlations between the gene mutation status and tumor mutation burden (TMB) levels, and neo-antigen levels were analyzed by Wilcoxon test. Kaplan-Meier method was employed to analyze the progression-free survival (PFS) of lung cancer patients with immunotherapy. Gene set enrichment analysis (GSEA) was used to investigate the functional changes affected by TP53
mut /TTNmut . The immune cell infiltration landscape in co-mutation subgroups was analyzed using CIBERSORT., Results: 1) TP53, TTN, CSMD3, MUC16, RYR2, LRP1B, USH2A, SYNE1, ZFHX4, FAM135B, KMT2D, and NAV3 were frequently mutated in LUSC patients. 2) TMB levels in highly mutated groups were higher than that in wild type groups. 3) There were higher neoantigen levels in mutation group compared to the wild-type group, and LUSC patients in mutation group had longer PFS. 4) TP53mut /TTNmut co-mutation group exhibited higher TMB levels and better response to immunotherapy. 5) A host of immune-related signaling pathways was inhibited in TP53mut /TTNmut subgroup. 6) There were more T follicular helper cells and NK cells were in TP53mut /TTNmut subgroup than in the WT subgroup., Conclusion: The LUSC patients with TP53 and TTN co-mutation had higher TMB levels and better response to immunotherapy. The TP53 and TTN co-mutation is a promising novel biomarker to assist LUSC immunotherapy evaluation., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)- Published
- 2024
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9. Paper based immunosensing of ovarian cancer tumor protein CA 125 using novel nano-ink: A new platform for efficient diagnosis of cancer and biomedical analysis using microfluidic paper-based analytical devices (μPAD).
- Author
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Bahavarnia, Farnas, Saadati, Arezoo, Hassanpour, Soodabeh, Hasanzadeh, Mohammad, Shadjou, Nasrin, and Hassanzadeh, Ahmad
- Subjects
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TUMOR proteins , *MICROFLUIDIC analytical techniques , *FIELD emission electron microscopy , *OVARIAN tumors , *OVARIAN cancer , *SHAPE memory polymers - Abstract
Ovarian cancer is the first and most important cause of malignancy death in women. Mucin 16 or MUC16 protein also known as carcinoma antigen 125 (CA 125) is the most commonly used glycoprotein for early stage diagnosis of ovarian cancer. In this work, a novel paper-based bio-device through hand writing of Ag/RGO (silver nanoparticles/reduced graphene oxide) nano-ink on the flexible paper substrate using pen-on-paper technology was developed. The prepared interface was used to the recognition of CA 125 protein in human biofluid. For this purpose, Ag/rGO nano-ink was synthesized by deposition of Ag nanoparticles onto graphene oxide sheets and the reduction of graphene oxide to rGO simultaneously. Conductivity and resistance of conductive lines were studied after drawing on photographic paper. Subsequently, to prepare a new and unique immuno-device, paper electrode modified by cysteamine caped gold nanoparticles (CysA/Au NPs) using electrochemical techniques. CysA is bonded by sulfur atoms with Au (CysA/Au NPs), and from the amine group with hydroxyl and carboxyl groups of Ag/RGO nano-ink deposited on the surface of paper-based electrodes (CysA/Au NPs/Ag-rGO). Then, anti-CA 125 antibody was immobilized on the electrode surface through Au NPs and CA 125 positively charged amine groups interaction. Atomic force microscopy, Transmission electron microscopy, Field emission scanning electron microscopy, and dynamic light scattering, were performed to identify the engineered immunosensor. Using chronoamperometry technique and under the optimized conditions, the low limit of quantitation (LLOQ) for the proposed immunoassay was recorded as 0.78 U/ml, which this evaluation was performed at highly linear range of 0.78–400 U/ml. The high sensitivity of the electrochemical immunosensor device is indicative of the ability of this immuno-device to detect early stages ovarian cancer. Unlabelled Image [ABSTRACT FROM AUTHOR]
- Published
- 2019
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10. p53 gene cloning and response to hypoxia in the plateau zokor, Myospalax baileyi.
- Author
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An, Zhi-fang, Zhao, Kang, Wei, Lin-na, Wang, Zhi-jie, Li, Su-hua, Wei, Lian, and Wei, Deng-bang
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- *
P53 antioncogene , *ZOKORS , *ANIMAL cloning , *GENETIC regulation , *TUMOR proteins , *P53 protein - Abstract
The plateau zokor (Myospalax baileyi) is a specialized subterranean rodent that lives on the Qinghai-Tibet Plateau. The species has evolved a series of strategies to adapt to its hypoxic environment and hypercapnia. p53 is a tumour suppressor gene that plays a crucial role in the cellular response to hypoxia by inducing cell cycle arrest, cell apoptosis, DNA damage repair and angiogenesis. To investigate the sequence characteristics of p53 and the response to hypoxia in plateau zokor, we cloned the p53 coding DNA sequence, analysed it, and measured the expression level of p53 at different altitudes in plateau zokor and rats. Our results show that the coding DNA sequence is 1179 bp, consisting of 392 amino acid residues. Compared to human p53, the subterranean rodents have two mutation sites in common with the human hotspots in the DNA-binding domain. Compared to subterranean rodents, plateau zokor have a mutation at residue 309. In addition, subterranean rodents have two convergent sites at residues 78 and 84. The expression levels of p53 in plateau zokor tissues increase significantly from 2260 m to 3300 m, but there was no significant difference in rats at those altitudes. Our results suggest that subterranean rodents have two mutation sites in common with the human hotspots in the DNA-binding domain, the mutation of Gly309Asp is a unique mutation site of plateau zokor p53, and there are two convergent sites enhancing subterranean rodent adaptation to hypoxic conditions. In addition, p53 is sensitive to the oxygen concentration in plateau zokor, and hypoxia upregulates the levels of p53. Generally, plateau zokor use this strategy to adapt to a hypoxic environment. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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11. 5-Oxo-hexahydroquinoline derivatives as modulators of P-gp, MRP1 and BCRP transporters to overcome multidrug resistance in cancer cells
- Author
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Hélène Baubichon-Cortay, Ruttiros Khonkarn, Alexis Moreno, Luciano Saso, Sara Ranjbar, Omidreza Firuzi, Ramin Miri, Mehdi Khoshneviszadeh, Najmeh Edraki, Pierre Falson, Microbiologie moléculaire et biochimie structurale / Molecular Microbiology and Structural Biochemistry (MMSB), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Institut de biologie et chimie des protéines [Lyon] (IBCP), Department of Physiology and Pharmacology 'Vittorio Erspamer', and Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome]
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verapamil ,Abcg2 ,aromatic compound ,multidrug resistance-associated protein 1 ,Drug Resistance ,ATP-binding cassette transporter ,IC50 ,[CHIM.THER]Chemical Sciences/Medicinal Chemistry ,MES-SA/Dx5 cell line ,Toxicology ,5-oxo-hexahydroquinoline ,Rhodamine 123 ,0302 clinical medicine ,Antibiotics ,2 pyridyl alkyl carboxylic acid ,5 oxo hexahydroquinoline derivative ,ABC transporter ,ABC transporter subfamily B ,antineoplastic agent ,breast cancer resistance protein ,calcein ,carboxylic acid derivative ,chlorine ,doxorubicin ,glutathione ,mitoxantrone ,multidrug resistance associated protein 1 ,pyridin 2 yethyl 2 methyl 4 ( 4 methoxyphenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylethyl 2 methyl 4 ( 2,3 dichlorophenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylethyl 2 methyl 4 ( 2,4 dichlorophenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylethyl 2 methyl 4 ( 4 chlorophenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylethyl 2 methyl 4 ( 4 nitrophenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylethyl 2 methyl 4 phenyl 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylpropyl 2 methyl 4 ( 2,3 dichlorophenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylpropyl 2 methyl 4 ( 3 chlorophenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylpropyl 2 methyl 4 ( 3 fluorophenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylpropyl 2 methyl 4 ( 3 nitrophenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylpropyl 2 methyl 4 ( 4 chlorophenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 ylpropyl 2 methyl 4 ( 4 nitrophenyl) 5 oxo 1,4,5,6,7,8 hexahydroquinoline 3 carboxylic acid ,pyridine derivative ,quinoline derivative ,rhodamine 123 ,unclassified drug ,ABCG2 protein, human ,antineoplastic antibiotic ,multidrug resistance associated protein ,tumor protein, Article ,cancer cell ,cancer cell line ,controlled study ,cytotoxicity ,drug accumulation ,drug design ,drug synthesis ,flow cytometry ,gene overexpression ,growth inhibition ,human ,human cell ,in vitro study ,MES-SA cell line ,multidrug resistance ,sarcoma cell line ,substitution reaction ,uterus sarcoma ,animal ,cell line ,drug effect ,drug resistance ,hamster ,metabolism ,neoplasm ,physiology, Animals ,Antibiotics, Antineoplastic ,ATP Binding Cassette Transporter, Subfamily B, Member 1 ,ATP Binding Cassette Transporter, Subfamily G, Member 2 ,Cell Line ,Cricetinae ,Doxorubicin ,Drug Resistance, Multiple ,Drug Resistance, Neoplasm ,Glutathione ,Humans ,Multidrug Resistance-Associated Proteins ,Neoplasm Proteins ,Neoplasms ,Quinolines ,ABCB1 ,ABCC1 ,ABCG2 ,Calcein AM ,Mitoxantrone ,pyridin 2 ylethyl 2 methyl 4 phenyl 5 oxo 1 ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Antineoplastic ,3. Good health ,pyridin 2 ylpropyl 2 methyl 4 ( 2 ,030220 oncology & carcinogenesis ,pyridin 2 ylpropyl 2 methyl 4 ( 3 fluorophenyl) 5 oxo 1 ,Efflux ,Multiple ,3 dichlorophenyl) 5 oxo 1 ,Member 2 ,Member 1 ,Article ,03 medical and health sciences ,tumor protein ,pyridin 2 ylethyl 2 methyl 4 ( 4 nitrophenyl) 5 oxo 1 ,Pharmacology ,ABCG2 protein ,medicine.disease ,030104 developmental biology ,4 dichlorophenyl) 5 oxo 1 ,chemistry ,Cancer cell ,pyridin 2 ylpropyl 2 methyl 4 ( 3 nitrophenyl) 5 oxo 1 ,0301 basic medicine ,Subfamily G ,chemistry.chemical_compound ,pyridin 2 ylethyl 2 methyl 4 ( 2 ,pyridin 2 ylpropyl 2 methyl 4 ( 4 chlorophenyl) 5 oxo 1 ,biology ,pyridin 2 ylpropyl 2 methyl 4 ( 4 nitrophenyl) 5 oxo 1 ,pyridin 2 ylpropyl 2 methyl 4 ( 3 chlorophenyl) 5 oxo 1 ,Subfamily B ,ATP Binding Cassette Transporter ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,medicine ,Animals ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,8 hexahydroquinoline 3 carboxylic acid ,pyridin 2 yethyl 2 methyl 4 ( 4 methoxyphenyl) 5 oxo 1 ,Cancer ,pyridin 2 ylethyl 2 methyl 4 ( 4 chlorophenyl) 5 oxo 1 ,Multiple drug resistance ,physiology ,biology.protein ,Cancer research ,Neoplasm - Abstract
International audience; Multidrug resistance (MDR) in cancer cells is often associated with overexpression of ATP-binding cassette (ABC) transporters, including P-glycoprotein (P-gp/ABCB1), multidrug resistance-associated protein 1 (MRP1/ABCC1) and breast cancer resistance protein (BCRP/ABCG2). Modulators of these transporters might be helpful in overcoming MDR. Moreover, exploiting collateral sensitivity (CS) could be another approach for efficient treatment of cancer. Twelve novel 5-oxo-hexahydroquinoline derivatives bearing different aromatic substitutions at C 4 , while having 2-pyridyl alkyl carboxylate substituents at the C 3 were synthesized and evaluated for MDR reversal activity by flow cytometric determination of rhodamine 123, calcein and mitoxantrone accumulations in P-gp, MRP1 and BCRP-overexpressing cell lines, respectively. Furthermore, to confirm the P-gp inhibitory activity, the effect of compounds on the reduction of doxorubicin's IC 50 of drug-resistant human uterine sarcoma cell line, MES-SA/DX5, was evaluated. Compounds D6, D5 and D3 (bearing 3-chlorophenyl, 2,3-dichlorophenyl and 4-chlorophenyl substituents at C 4 position of 5-oxo-hexahydroquinoline core) were the most potent P-gp, MRP1 and BCRP inhibitors, respectively, causing significant MDR reversal at concentrations of 1-10 μM. Additionally, D4 (containing 3-flourophenyl) was the most effective MRP1-dependent CS inducing agent. Overall, chlorine containing compounds D6, C4 and D3 were capable of significant inhibition of all 3 important efflux pumps in cancer cells. Moreover, D6 also induced CS triggered by reducing glutathione efflux. In conclusion, some of the 5-oxo-hexahydroquinoline derivatives are effective efflux pump inhibitors capable of simultaneously blocking 3 important ABC transporters involved in MDR, and represent promising agents to overcome MDR in cancer cells.
- Published
- 2019
- Full Text
- View/download PDF
12. The structure of an Hsp90-immunophilin complex reveals cochaperone recognition of the client maturation state
- Author
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Kanghyun Lee, Aye C. Thwin, Stephanie N. Gates, Jason E. Gestwicki, Eric Tse, Daniel R. Southworth, and Cory M. Nadel
- Subjects
1.1 Normal biological development and functioning ,Molecular Conformation ,Hsp90 ,cryo-electron microscopy ,Isomerase ,Medical and Health Sciences ,Article ,Tacrolimus Binding Proteins ,Immunophilins ,Underpinning research ,Biomarkers, Tumor ,Humans ,Translationally-Controlled 1 ,Amino Acid Sequence ,HSP90 Heat-Shock Proteins ,immunophilins ,Binding site ,Molecular Biology ,Tumor ,Binding Sites ,biology ,molecular chaperones ,Cryoelectron Microscopy ,Tumor Protein, Translationally-Controlled 1 ,Cell Biology ,Biological Sciences ,p23 ,Cell biology ,Folding (chemistry) ,Tetratricopeptide ,FKBP51 ,Chaperone (protein) ,heat shock proteins ,peptidyl-prolyl isomerase ,biology.protein ,Tumor Protein ,Biomarkers ,Alpha helix ,Developmental Biology ,Molecular Chaperones ,Protein Binding - Abstract
Summary The Hsp90 chaperone promotes folding and activation of hundreds of client proteins in the cell through an ATP-dependent conformational cycle guided by distinct cochaperone regulators. The FKBP51 immunophilin binds Hsp90 with its tetratricopeptide repeat (TPR) domain and catalyzes peptidyl-prolyl isomerase (PPIase) activity during folding of kinases, nuclear receptors, and tau. Here we determined the cryoelectron microscopy (cryo-EM) structure of the human Hsp90:FKBP51:p23 complex to 3.3 A, which, together with mutagenesis and crosslinking analyses, reveals the basis for cochaperone binding to Hsp90 during client maturation. A helix extension in the TPR functions as a key recognition element, interacting across the Hsp90 C-terminal dimer interface presented in the closed, ATP conformation. The PPIase domain is positioned along the middle domain, adjacent to Hsp90 client binding sites, whereas a single p23 makes stabilizing interactions with the N-terminal dimer. With this architecture, FKBP51 is positioned to act on specific client residues presented during Hsp90-catalyzed remodeling.
- Published
- 2020
13. Talazoparib nanoparticles for overcoming multidrug resistance in triple-negative breast cancer
- Author
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Berrin Tunca, Unal Egeli, Gulsah Cecener, Gamze Guney Eskiler, Bursa Uludağ Üniversitesi/Tıp Fakültesi/Tıbbi Biyoloji Anabilim Dalı., Çeçener, Gülşah, Egeli, Ünal, and Tunca, Berrin
- Subjects
Cell viability ,Cellular distribution ,Abcg2 ,Tumor protein ,0302 clinical medicine ,Olaparib ,Nanoparticle ,Pathology ,Triple-negative breast cancer ,Gene expression regulation ,Cancer resistance ,DNA-repair ,Messenger RNA ,MicroRNA 451a ,Drug transport ,Multidrug resistance-associated protein 1 ,Lipids ,ATP binding cassette transporter, subfamily G, member 2 ,Gene expression profiling ,Neoplasm proteins ,030220 oncology & carcinogenesis ,Reverse transcription polymerase chain reaction ,Efflux ,Solid lipid nanoparticle ,Chemoresistance ,Human ,MRNA expression level ,BMN 673 ,Multidrug resistance (MDR) ,P-glycoprotein ,Article ,Drug resistance, multiple ,Multidrug resistance associated protein ,03 medical and health sciences ,Breast cancer ,Drug formulation ,Genetics ,Humans ,Tumor cell line ,medicine.disease ,body regions ,Drug effect ,Solid lipid nanoparticles (SLNs) ,030104 developmental biology ,Cell line, tumor ,chemistry ,Human cell ,Gene expression regulation, neoplastic ,Drug resistance ,Nanoparticles ,Phthalazines ,Triple negative breast neoplasms ,Transmission electron microscopy ,0301 basic medicine ,Unclassified drug ,Physiology ,Talazoparib ,Clinical Biochemistry ,Immunofluorescence ,Ovarian Neoplasms ,Homologous Recombination ,Antiproliferative activity ,ABCB1 protein, human ,Multidrug resistance ,Western blotting ,chemistry.chemical_compound ,Phthalazine derivative ,Triple negative breast cancer ,ABCG2 protein, human ,Protein expression level ,Cellular localization ,Priority journal ,Multidrug resistance-associated proteins ,biology ,medicine.diagnostic_test ,Multiple-drug resistance ,MicroRNA ,Particle size ,Lipid ,Breast cancer resistance protein ,Chemistry ,Combination ,Female ,Drug sensitivity ,Cell biology ,Solid lipid nanoparticles ,MicroRNA 326 ,ATP binding cassette transporter, subfamily B ,MicroRNA 328 ,Triple negative breast cancer (TNBC) ,Western blot ,Drug resistance, neoplasm ,MicroRNA 298 ,medicine ,In vitro study ,Zeta potential ,Parp inhibitor talazoparib ,Calcein ,Multiple drug resistance ,Drug efficacy ,Doxorubicin ,biology.protein ,Cancer research ,Involvement ,Controlled study ,Multidrug resistance associated protein 1 - Abstract
Herein, we investigated efflux pumps-mediated talazoparib-resistance in the treatment of triple-negative breast cancer (TNBC). Furthermore, we produced a novel talazoparib-solid lipid nanoparticles (SLNs) and then explored in vitro therapeutic efficacy of talazoparib-SLNs to overcome talazoparib-resistance in TNBC cells. Talazoparib-SLNs formulation was produced and then characterized. Calcein and Rho-123 were used to analyze the functional activity of drug efflux pumps in these cells. Additionally, RT-PCR, western blot and immunofluorescence analysis were used to detect the messenger RNA, and protein expression level, and cellular localization of the multidrug resistance (MDR1), breast cancer resistance protein (BCRP), and MRP1. We found that talazoparib efflux was mediated by BCRP and MRP1 pumps in TNBC cells. Talazoparib-SLNs could significantly enhance therapeutic efficacy of talazoparib. Furthermore, talazoparib-SLNs were more effective in the suppression of MDR1, BCRP, and MRP1 gene and protein expression levels than talazoparib. Consequently, this study suggests that talazoparib-SLNs formulation represents a promising therapeutic carrier to reverse MDR-mediated resistance in TNBC.
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- 2020
14. Structure, regulation, and (patho-)physiological functions of the stress-induced protein kinase CK1 delta (CSNK1D)
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Xu, P., Ianes, C., Gärtner, F., Liu, C., Burster, T., Bakulev, V., Rachidi, N., Knippschild, U., Bischof, J., Xu, P., Ianes, C., Gärtner, F., Liu, C., Burster, T., Bakulev, V., Rachidi, N., Knippschild, U., and Bischof, J.
- Abstract
Members of the highly conserved pleiotropic CK1 family of serine/threonine-specific kinases are tightly regulated in the cell and play crucial regulatory roles in multiple cellular processes from protozoa to human. Since their dysregulation as well as mutations within their coding regions contribute to the development of various different pathologies, including cancer and neurodegenerative diseases, they have become interesting new drug targets within the last decade. However, to develop optimized CK1 isoform-specific therapeutics in personalized therapy concepts, a detailed knowledge of the regulation and functions of the different CK1 isoforms, their various splice variants and orthologs is mandatory. In this review we will focus on the stress-induced CK1 isoform delta (CK1δ), thereby addressing its regulation, physiological functions, the consequences of its deregulation for the development and progression of diseases, and its potential as therapeutic drug target. © 2019 Elsevier B.V.
- Published
- 2019
15. Deep Learning of P73 Biomarker Expression in Rectal Cancer Patients
- Author
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Pham, Tuan D., Fan, Chuanwen, Zhang, Hong, Sun, Xiao-Feng, Pham, Tuan D., Fan, Chuanwen, Zhang, Hong, and Sun, Xiao-Feng
- Abstract
By applying deep learning, we were able to compare p73 protein expression patterns of different tissue types including normal mucosa, primary tumor and lymph node metastasis in rectal cancer patients using immunohistochemical slides. The pair-wise pattern comparisons were automatedly carried out by considering color, edge, blobs, and other morphological information in the images. We discovered that when the pattern dissimilarity between primary tumor and lymph node metastasis is relatively low among other tissue pairs (primary tumor and distant normal, biopsy and distant normal, biopsy and primary tumor, biopsy and primary tumor, lymph node metastasis and distant normal, lymph node metastasis and biopsy), there was an implication of short-time survival. This original result suggests a novel application of advanced artificial intelligence in machine learning for clinical finding in rectal cancer and encourages relevant study of multiple biomarker expressions in cancer patients.
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- 2019
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16. TCTP from Loxosceles Intermedia (Brown Spider) Venom Contributes to the Allergic and Inflammatory Response of Cutaneous Loxoscelism
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Ana Carolina Martins Wille, Larissa Vuitika, Lucas P da Silva, Kamila G Moreno, Bruna da Silva Soley, Andrea Senff-Ribeiro, Katia C. Barbaro, Olga Meiri Chaim, Luiza Helena Gremski, Alana B C Basílio, Marianna Boia-Ferreira, Silvio Sanches Veiga, and Lucélia Donatti
- Subjects
0301 basic medicine ,Spider Venoms ,venom ,Vascular permeability ,Venom ,medicine.disease_cause ,Promethazine ,TCTP ,Mice ,Piperidines ,hrf ,2.1 Biological and endogenous factors ,Mast Cells ,Translationally-Controlled 1 ,Aetiology ,toxin ,lcsh:QH301-705.5 ,Cultured ,Tumor ,General Medicine ,Loxoscelism ,Pathophysiology ,Tumor Cells ,loxosceles ,Rabbits ,Drug ,tctp ,Cimetidine ,Intravenous ,Loxosceles ,Biology ,Skin Diseases ,Injections ,Dose-Response Relationship ,03 medical and health sciences ,In vivo ,Translationally-controlled tumor protein ,Cromolyn Sodium ,medicine ,Hypersensitivity ,Animals ,Intraperitoneal ,Inflammation ,030102 biochemistry & molecular biology ,Toxin ,Phosphoric Diester Hydrolases ,Inflammatory and immune system ,medicine.disease ,brown spider ,In vitro ,Rats ,030104 developmental biology ,lcsh:Biology (General) ,Immunology ,HRF ,Tumor Protein ,Biomarkers - Abstract
LiTCTP is a toxin from the Translationally Controlled Tumor Protein (TCTP) family identified in Loxosceles brown spider venoms. These proteins are known as histamine-releasing factors (HRF). TCTPs participate in allergic and anaphylactic reactions, which suggest their potential role as therapeutic targets. The histaminergic effect of TCTP is related to its pro-inflammatory functions. An initial characterization of LiTCTP in animal models showed that this toxin can increase the microvascular permeability of skin vessels and induce paw edema in a dose-dependent manner. We evaluated the role of LiTCTP in vitro and in vivo in the inflammatory and allergic aspects that undergo the biological responses observed in Loxoscelism, the clinical condition after an accident with Loxosceles spiders. Our results showed LiTCTP recombinant toxin (LiRecTCTP) as an essential synergistic factor for the dermonecrotic toxin actions (LiRecDT1, known as the main toxin in the pathophysiology of Loxoscelism), revealing its contribution to the exacerbated inflammatory response clinically observed in envenomated patients.
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- 2019
17. Brown Spider (Loxosceles) Venom Toxins as Potential Biotools for the Development of Novel Therapeutics
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Elidiana de Bona, Luiza Helena Gremski, Olga Meiri Chaim, Vanessa Ribeiro Heidemann, Silvio Sanches Veiga, Raghuvir K. Arni, Fernando Hitomi Matsubara, Clara Guerra-Duarte, Andrea Senff-Ribeiro, Zelinda Schemczssen-Graeff, Daniele Chaves-Moreira, and Carlos Chávez-Olórtegui
- Subjects
Proteases ,Insecticides ,Serine Proteinase Inhibitors ,Health, Toxicology and Mutagenesis ,Anti-Inflammatory Agents ,Spider Venoms ,venom ,lcsh:Medicine ,Context (language use) ,Venom ,Antineoplastic Agents ,Biology ,Toxicology ,complex mixtures ,biotools ,03 medical and health sciences ,Translationally-controlled tumor protein ,drug targets ,Animals ,Humans ,Translationally-Controlled 1 ,Envenomation ,030304 developmental biology ,0303 health sciences ,Analgesics ,Phosphoric Diester Hydrolases ,novel therapeutics ,030302 biochemistry & molecular biology ,lcsh:R ,toxins ,Pharmacology and Pharmaceutical Sciences ,brown spider ,Recombinant Proteins ,Brown spider ,Neuroprotective Agents ,Biochemistry ,Snake venom ,Tumor Protein ,Inhibitor cystine knot ,Immunotherapy ,Biochemistry and Cell Biology ,Peptides ,Loxosceles - Abstract
Brown spider envenomation results in dermonecrosis with gravitational spreading characterized by a marked inflammatory reaction and with lower prevalence of systemic manifestations such as renal failure and hematological disturbances. Several toxins make up the venom of these species, and they are mainly peptides and proteins ranging from 5–40 kDa. The venoms have three major families of toxins: phospholipases-D, astacin-like metalloproteases, and the inhibitor cystine knot (ICK) peptides. Serine proteases, serpins, hyaluronidases, venom allergens, and a translationally controlled tumor protein (TCTP) are also present. Toxins hold essential biological properties that enable interactions with a range of distinct molecular targets. Therefore, the application of toxins as research tools and clinical products motivates repurposing their uses of interest. This review aims to discuss possibilities for brown spider venom toxins as putative models for designing molecules likely for therapeutics based on the status quo of brown spider venoms. Herein, we explore new possibilities for the venom components in the context of their biochemical and biological features, likewise their cellular targets, three-dimensional structures, and mechanisms of action.
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- 2019
18. Biochemical studies of cytokinetic changes during tumor growth.
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Harris, J W, Meyskens, F, and Patt, H M
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Adenosine Triphosphate: biosynthesis ,Alkaline Phosphatase: biosynthesis ,Animals ,Anoxia: metabolism ,Carbon Isotopes ,Carcinoma ,Ehrlich Tumor: enzymology ,metabolism ,Cell Division ,DNA ,Neoplasm: biosynthesis ,Dactinomycin ,Female ,Glucosephosphate Dehydrogenase: biosynthesis ,Glucuronidase: biosynthesis ,Glutathione Reductase: biosynthesis ,Glycolysis ,Histocytochemistry ,Hydrogen-Ion Concentration ,Leucine: metabolism ,Mice ,Neoplasm Proteins: biosynthesis ,Neoplasm Transplantation ,Oxygen Consumption ,RNA ,Neoplasm: biosynthesis ,Sulfatases: biosynthesis ,Thymidine: metabolism ,Thymidine Kinase: biosynthesis ,Time Factors ,Tritium ,adenosine triphosphate ,alkaline phosphatase ,beta glucuronidase ,carbon ,dactinomycin ,DNA ,glucose 6 phosphate dehydrogenase ,glutathione reductase ,leucine ,RNA ,sulfatase ,thymidine ,thymidine kinase ,tritium ,tumor protein ,animal ,anoxia ,article ,biosynthesis ,cancer transplantation ,cell division ,cytochemistry ,Ehrlich ascites tumor ,enzymology ,female ,glycolysis ,metabolism ,mouse ,oxygen consumption ,pH ,time ,Adenosine Triphosphate ,Alkaline Phosphatase ,Animal ,Anoxia ,Carbon Isotopes ,Carcinoma ,Ehrlich Tumor ,Cell Division ,Dactinomycin ,DNA ,Neoplasm ,Female ,Glucosephosphate Dehydrogenase ,Glucuronidase ,Glutathione Reductase ,Glycolysis ,Histocytochemistry ,Hydrogen-Ion Concentration ,Leucine ,Mice ,Neoplasm Proteins ,Neoplasm Transplantation ,Oxygen Consumption ,RNA ,Neoplasm ,Sulfatases ,Thymidine ,Thymidine Kinase ,Time Factors ,Tritium - Published
- 1970
19. A novel oncogene URG4/URGCP and its role in cancer
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Dodurga, Y, Secme, M, and Satiroglu-Tufan, NL
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Hepatitis B virus ,liver cell carcinoma ,protein synthesis ,Carcinogenesis ,nasopharynx carcinoma ,Review ,malignant neoplasm ,URG4/URGCP ,Oncogene ,Cancer ,URGCP gene ,tumor protein ,oncogene ,glioma ,osteosarcoma ,Neoplasms ,chromosome 7p ,Humans ,genetics ,amino acid derivative ,human ,chromosome arm ,gene location ,nonhuman ,stomach cancer ,URG4 protein, human ,nucleotide sequence ,Oncogenes ,clinical feature ,Neoplasm Proteins ,gene function ,priority journal ,URG4 gene ,hepatitis B antigen ,cytoplasm ,gene expression ,bladder cancer ,cell cycle regulation ,metabolism ,neoplasm - Abstract
Oncogenes are mutated form of normal cellular genes called as proto-oncogenes and conduce to the cancer development process. Despite the fact that so many genes have been described, new genes with oncogenic characteristic and potential or tumor supressoring activity are still being defined. Recently, Up-regulated gene 4/Upregulator of cell proliferation (URG4/URGCP), a novel gene, induced by hepatitis-Bvirus-encoded X antigen (HBxAg), has been identified. URG4/URGCP gene was registered to the National Center for Biotechnology Information-GenBank (NCBI-GenBank, Entrez GeneID: 55665 and Entrez Nucleotide ID NM_017920). URG4/URGCP is located on the short arm of chromosome 7 (7p13) and synthesizes a protein containing 922 amino acids in the cytoplas. Relationship between URG4/URGCP expression and clinicopathologic characteristics were evaluated and significant results were in various cancer types such as hepatocellular carcinoma, osteosarcoma, nasopharyngeal carcinoma, bladder cancer, gastric cancer and glioma. Although, biological activity of URG4/URGCP and its effect mechanism in malignant cells is not fully understood, all interesting and promising results shows that URG4/URGCP may be a putative oncogene that contributes to multistep carcinogenesis, cell cycle regulation and other important biological process in the cell. © 2018 Elsevier B.V.
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- 2018
20. Oxidative Stress Promotes Doxorubicin-Induced Pgp and BCRP Expression in Colon Cancer Cells Under Hypoxic Conditions
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Pinzón-Daza M.L., Cuellar-Saenz Y., Nualart F., Ondo-Méndez, Alejandro, Del Riesgo Prendes, Lilia, Castillo-Rivera F., and Garzón R.
- Subjects
Unclassified drug ,Physiology ,Atp binding cassette transporter ,Enzyme linked immunosorbent assay ,Cell hypoxia ,Atp-binding cassette ,Cell survival ,member 2 ,member 1 ,Tumor protein ,Cancer growth ,polycyclic compounds ,Hypoxia ,Priority journal ,Apex1 protein ,Cancer resistance ,Microscopy ,alpha subunit ,sub-family b ,Dna (apurinic or apyrimidinic site) lyase ,Breast cancer resistance protein ,Colon cancer ,confocal ,Neoplasm proteins ,Reverse transcription polymerase chain reaction ,Abcg2 protein ,Human ,Hypoxia inducible factor 1alpha ,tumor ,Colonic neoplasms ,Lyase inhibitor ,Dna-(apurinic or apyrimidinic site) lyase ,P-glycoprotein ,Ht29 cells ,Article ,Enzyme-linked immunosorbent assay ,Multidrug resistance protein 1 ,Genetics ,Ht-29 cell line ,Humans ,sub-family g ,Hypoxia-inducible factor 1 ,Drug effects ,Hif1a protein ,Multidrug resistance protein ,Colon tumor ,Tumor cell line ,Cobalt chloride ,Cancer survival ,Confocal microscopy ,E 3330 ,Metabolism ,Human cell ,Doxorubicin ,Oxidative stress ,Drug resistance ,Protein expression ,Reactive oxygen species ,Cell line ,Reactive oxygen metabolite ,Controlled study - Abstract
P-glycoprotein (Pgp) and breast cancer resistance protein (BCRP) are ATP binding cassette (ABC) transporters that are overexpressed in different drug-resistant cancer cell lines. In this study, we investigated whether doxorubicin promotes Pgp and/or BCRP expression to induce drug resistance in colon cancer cells under hypoxic conditions. We analyzed HIF-1? activity via ELISA, Pgp, and BCRP expression by qRT-PCR and the relationship between doxorubicin uptake and ABC transporter expression via confocal microscopy in HT-29WT and HT-29 doxorubicin-resistant colon cancer cells (HT-29DxR). These cells were treated with doxorubicin and/or CoCl2 (chemical hypoxia), and reactive oxygen species inductors. We found that the combination of chemically induced hypoxia and doxorubicin promoted Pgp mRNA expression within 24 h in HT-29WT and HT-29DxR cells. Both doxorubicin and CoCl2 alone or in combination induced Pgp and BCRP expression, as demonstrated via confocal microscopy in each of the above two cell lines. Thus, we surmised that Pgp and BCRP expression may result from synergistic effects exerted by the combination of doxorubicin-induced ROS production and HIF-1? activity under hypoxic conditions. However, HIF-1? activity disruption via the administration of E3330, an APE-1 inhibitor, downregulated Pgp expression and increased doxorubicin delivery to HT-29 cells, where it served as a substrate for Pgp, indicating the existence of an indirect relationship between Pgp expression and doxorubicin accumulation. Thus, we concluded that Pgp and BCRP expression can be regulated via cross-talk between doxorubicin and hypoxia, promoting drug resistance in HT-29 WT, and HT-29DxR cells and that this process may be ROS dependent. J. Cell. Biochem. 118: 1868–1878, 2017. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.
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- 2017
21. Expression and clinical significance of miRNAs that may be associated with the FHIT gene in breast cancer
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Ismet Tasdelen, Gulsah Cecener, Sahsine Tolunay, Unal Egeli, Berrin Tunca, Sehsuvar Gokgoz, Secil Ak, Elif Demirdogen Sevinc, Uludağ Üniversitesi/Tıp Fakültesi/Tıbbi Biyoloji Anabilim Dalı., Uludağ Üniversitesi/Tıp Fakültesi/Genel Cerrahi Anabilim Dalı., Uludağ Üniversitesi/Tıp Fakültesi/Patoloji Anabilim Dalı., Sevinç, Elif Demirdöğen, Çeçener, Gülşah, Ak, Seçil, Tunca, Berrin, Egeli, Ünal, Gökgöz, Şehsuvar, Tolunay, Şahsine, Taşdelen, İsmet, AAP-9988-2020, AAH-1420-2021, AAI-1612-2021, and ABI-6078-2020
- Subjects
0301 basic medicine ,Unclassified drug ,Nucleotide Binding Protein ,Histidine ,Triad ,MicroRNA 668 ,Progesterone receptor ,Metastasis ,Tumor protein ,Breast cancer ,0302 clinical medicine ,FHIT ,Pathology ,Estrogen receptor ,Young adult ,Priority journal ,Gene expression regulation ,Aged, 80 and over ,Genetics & heredity ,miR-922 ,Cell-proliferation ,MicroRNA ,General Medicine ,Middle Aged ,Classification ,Acid Anhydride Hydrolases ,Neoplasm Proteins ,Gene Expression Regulation, Neoplastic ,Phenotype ,030220 oncology & carcinogenesis ,Ki-67 ,MicroRNA 143 ,Female ,Cancer tissue ,Human ,Adult ,Adolescent ,Tumor gene ,Histopathology ,Breast tumor ,Breast Neoplasms ,Down regulation ,Major clinical study ,Biology ,miR-663a ,MicroRNA 922 ,Article ,03 medical and health sciences ,Young Adult ,Upregulation ,microRNA ,Genetics ,medicine ,Humans ,Clinical significance ,Human tissue ,neoplasms ,Acid anhydride hydrolase ,Aged ,Cancer prognosis ,Lymph node metastasis ,Hyperplasia ,Gene Expression Profiling ,miR-668 ,MicroRNA 663a ,Very elderly ,Computational Biology ,3' untranslated region ,medicine.disease ,miR-143 ,Rnas ,Gene expression profiling ,Fragile histidine triad protein ,MicroRNAs ,Metabolism ,030104 developmental biology ,Genetic association ,Cancer research ,biology.protein ,Ki 67 antigen ,Controlled study ,Biomarkers - Abstract
The dysregulation of miRNA expression has frequently been observed in breast cancer. Therefore, we investigated the expression profile of miRNAs that may be associated with expression of the FHIT gene in breast cancer and assessed their clinicopathological significance. The expression levels of miR-143, miR-663a, miR-668, miR-922 and FHIT were analyzed in normal and malignant breast tissues from 65 patients with breast cancer. We studied the correlation between the expression of miR-143, miR-663a, miR-668, miR-922 and FHIT and the clinicopathological features presented by the patients. The expression levels of the miRNAs and FHIT were downregulated in breast cancer tissue. The expression levels of miR-143, miR-663a and miR-668 were significantly reduced in FHIT downregulated tumors. miR-668 expression was also significantly altered relative to FHIT down- and up- regulated tumor tissues. Reduced miR-663a expression was statistically associated with high-grade ER/PR (+) status, benign reactive hyperplasia, lymph-node metastasis, in-situ component >25% and Ki 67 > 15% compared with non-tumor tissues. Additionally, reduced miR-668 expression was significantly different between tumors with and without lymph-node metastasis. miR-668 may play an important role in breast cancer development and progression by regulating the expression of FHIT. Furthermore, miR-668 and miR-663a may be potential prognostic biomarkers for breast cancer.
- Published
- 2016
22. FHIT Gene Sequence Variants and Reduced Fhit Protein Expression in Glioblastoma Multiforme
- Author
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Sahsine Tolunay, Gulsah Cecener, Kaya Aksoy, Gulnur Guler, Ahmet Bekar, Unal Egeli, Berrin Tunca, Uludağ Üniversitesi/Tıp Fakültesi/Tıbbi Biyoloji Anabilim Dalı., Uludağ Üniversitesi/Tıp Fakültesi/Beyin ve Sinir Cerrahisi Anabilim Dalı., Uludağ Üniversitesi/Tıp Fakültesi/Tıbbi Patoloji Anabilim Dalı., Çeçener, Gülşah, Tunca, Berrin Türkei, Egeli, Ünal, Bekar, Ahmet, Tolunay, Şahsine, AAP-9988-2020, AAI-1612-2021, ABI-6078-2020, and AAH-1420-2021
- Subjects
Male ,Amino acid substitution ,Common fragile sites ,Carcinogenesis ,Protein function ,Predisposition ,Gene sequence ,medicine.disease_cause ,Sequence alterations ,Tumor protein ,Exon ,Polymorphism (computer science) ,Coding region ,Missense mutation ,Molecular genetics ,Breast-cancer ,Polymorphism, Single-Stranded Conformational ,Priority journal ,Transition (genetics) ,Brain Neoplasms ,General Medicine ,Middle Aged ,Immunohistochemistry ,SSCP ,Acid Anhydride Hydrolases ,Neoplasm Proteins ,3P14.2 ,Female ,Mutations ,Human ,Adult ,Single strand conformation polymorphism ,Molecular Sequence Data ,DNA sequence ,Major clinical study ,Biology ,Glioblastoma multiforme ,Neurosciences & neurology ,Article ,FHIT gene ,Cellular and Molecular Neuroscience ,Genetic screening ,Tumor-suppressor gene ,Genetics ,medicine ,Humans ,Epigenetics ,Gene mutation ,Human tissue ,neoplasms ,Acid anhydride hydrolase ,Aged ,Base Sequence ,Carcinoma ,Neurosciences ,Genetic Variation ,Single-strand conformation polymorphism ,Sequence Analysis, DNA ,Cell Biology ,Fragile Histidine Triad Protein ,Histidine ,Triad ,Molecular biology ,Brain-tumors ,Brain tumor ,Fragile histidine triad protein ,Metabolism ,Cell lung-cancer ,Genetic association ,Cancer research ,Protein expression ,Genetic variability ,Turkish patients ,Glioblastoma ,Controlled study ,Nucleotide sequence ,IHC - Abstract
Molecular studies have an important role in the elucidation of the mechanisms involved in Glioblastoma multiforme (GBM) development. The occurrence of FHIT gene alterations, which has an important role in different cancers, has not yet been studied well in GBM. We aimed to investigate the occurrence of alterations of FHIT gene sequence and protein expression in the GBMs. Sequence alterations in exons 5-9 of the FHIT gene were screened in 63 GBMs using the single-strand conformational polymorphism method, followed by DNA sequencing. Additionally, the level of Fhit protein expression in tissues of 48 tumors was assessed by immunohistochemistry (IHC). In our investigation, FHIT gene alterations in the coding region were detected in 11 of the 63 GBM cases (17.5%). Two different sequence variants were determined: one novel missense variant (G -> C transition at codon 49) and one previously described silent alteration (C -> T transition at codon 88). Using web-based programs, such as SIFT and ESEfinder, it was determined that both alterations might have caused significant modification on protein function. In addition, we identified a previously reported an intronic polymorphism (T -> A transition at IVS8-17) in 47.5% of cases as a similar rate (45%) in the control group. Moreover, it was observed that Fhit protein expression was reduced in 87.5% of tumors. In conclusion, the reduction or loss of Fhit protein expression by genetic alterations or epigenetic mechanisms in GBM might be associated with brain tumorigenesis.
- Published
- 2009
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- View/download PDF
23. Selective activation of TNFR1 and NF-κB inhibition by a novel biyouyanagin analogue promotes apoptosis in acute leukemia cells
- Author
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Savva, Christiana G., Totokotsopoulos, S., Nicolaou, K. C., Neophytou, Christiana M., Constantinou, Andreas I., and Constantinou, Andreas I. [0000-0003-0365-1821]
- Subjects
0301 basic medicine ,biyouyanagin A ,Cancer Research ,peripheral blood mononuclear cell ,Death receptors ,Apoptosis ,immortalized cell line ,0302 clinical medicine ,caspase 8 ,mononuclear cell ,mitochondrion ,genetics ,Phosphorylation ,caspase 9 ,NF-ΚΒ ,antineoplastic agent ,cellular distribution ,tumor necrosis factor alpha ,Leukemia ,Kinase ,phosphorylation ,NF-kappa B ,Nuclear factor κΒ ,gene expression regulation ,Biyouyanagin ,Cell biology ,unclassified drug ,Mitochondria ,Neoplasm Proteins ,Gene Expression Regulation, Neoplastic ,immunoglobulin enhancer binding protein ,HL-60 cell line ,Oncology ,Receptors, Tumor Necrosis Factor, Type I ,030220 oncology & carcinogenesis ,Caspases ,Signal transduction ,Tumor necrosis factor receptor 1 ,leukemia cell line ,Sesquiterpenes ,signal transduction ,NF-κΒ ,Signal Transduction ,Research Article ,antiproliferative activity ,sesquiterpene ,kc 53 ,transcription factor RelA ,Nuclear factor ΚΒ ,binding protein ,HL-60 Cells ,Biology ,chemistry ,Article ,03 medical and health sciences ,tumor protein ,Acute lymphocytic leukemia ,medicine ,Genetics ,Fas associated death domain protein ,sesquiterpene lactone ,receptor interacting protein 1 ,Humans ,controlled study ,Spiro Compounds ,Viability assay ,human ,protein Bid ,cell viability ,apoptosis inducing factor ,Cell Proliferation ,Cell growth ,cell nucleus ,human cell ,tumor necrosis factor receptor associated factor 2 ,HL 60 cell line ,medicine.disease ,spiro compound ,protein phosphorylation ,drug efficacy ,TNFR1 ,030104 developmental biology ,cell proliferation ,drug effects ,Leukocytes, Mononuclear ,pathology ,I kappa B alpha ,biosynthesis ,Immortalised cell line - Abstract
Background Acquired resistance towards apoptosis is a hallmark of cancer. Elimination of cells bearing activated oncogenes or stimulation of tumor suppressor mediators may provide a selection pressure to overcome resistance. KC-53 is a novel biyouyanagin analogue known to elicit strong anti-inflammatory and anti-viral activity. The current study was designed to evaluate the anticancer efficacy and molecular mechanisms of KC-53 against human cancer cells. Methods Using the MTT assay we examined initially how KC-53 affects the proliferation rates of thirteen representative human cancer cell lines in comparison to normal peripheral blood mononuclear cells (PBMCs) and immortalized cell lines. To decipher the key molecular events underlying its mode of action we selected the human promyelocytic leukemia HL-60 and the acute lymphocytic leukemia CCRF/CEM cell lines that were found to be the most sensitive to the antiproliferative effects of KC-53. Results KC-53 promoted rapidly and irreversibly apoptosis in both leukemia cell lines at relatively low concentrations. Apoptosis was characterized by an increase in membrane-associated TNFR1, activation of Caspase-8 and proteolytic inactivation of the death domain kinase RIP1 indicating that KC-53 induced mainly the extrinsic/death receptor apoptotic pathway. Regardless, induction of the intrinsic/mitochondrial pathway was also achieved by Caspase-8 processing of Bid, activation of Caspase-9 and increased translocation of AIF to the nucleus. FADD protein knockdown restored HL-60 and CCRF/CEM cell viability and completely blocked KC-53-induced apoptosis. Furthermore, KC-53 administration dramatically inhibited TNFα-induced serine phosphorylation on TRAF2 and on IκBα hindering therefore p65/NF-κΒ translocation to nucleus. Reduced transcriptional expression of pro-inflammatory and pro-survival p65 target genes, confirmed that the agent functionally inhibited the transcriptional activity of p65. Conclusions Our findings demonstrate, for the first time, the selective anticancer properties of KC-53 towards leukemic cell lines and provide a detailed understanding of the molecular events underlying its dual anti-proliferative and pro-apoptotic properties. These results provide new insights into the development of innovative and targeted therapies for the treatment of some forms of leukemia. Electronic supplementary material The online version of this article (doi:10.1186/s12885-016-2310-5) contains supplementary material, which is available to authorized users.
- Published
- 2015
24. Incidence and risk of xerosis with targeted anticancer therapies
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Shenhong Wu, Katja Schindler, Mario E. Lacouture, Kathryn Ciccolini, Johannah Valentine, Viswanath Reddy Belum, and Juanita Duran
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Web of science ,Daclizumab ,Dasatinib ,Cetuximab ,Antagonists and inhibitors ,Tumor protein ,Phase 1 clinical trial (topic) ,Antineoplastic agents ,Medicine ,Molecular targeted therapy ,Fulvestrant ,Alitretinoin ,Incidence ,Gefitinib ,Enzyme inhibitor ,Antineoplastic hormone agonists and antagonists ,Cancer registry ,Mek ,Bevacizumab ,Skin diseases ,Antineoplastic agent ,Erlotinib ,Hdac ,Molecularly targeted therapy ,Neoplasm proteins ,Cancer chemotherapy ,Dermatologist ,Age distribution ,Human ,medicine.medical_specialty ,Vegfr ,monoclonal ,Anastrozole ,Afatinib ,Article ,Crizotinib ,Humans ,Dosing ,Everolimus ,Phase 3 clinical trial (topic) ,Adverse effect ,Trastuzumab emtansine ,Xerosis ,Raf ,Clinical trial ,Concomitant ,Relative risk ,Immunology ,Cd20 ,Risk factor ,Phase 2 clinical trial (topic) ,Complication ,Axitinib ,Exemestane ,Skin manifestation ,Bortezomib ,Clinical trials ,Quality of life ,Randomized controlled trial (topic) ,Chemically induced ,Neoplasms ,Key words bcr-abl ,Alemtuzumab ,Priority journal ,Incidence (epidemiology) ,Dabrafenib ,Ibrutinib ,Medline ,Common Terminology Criteria for Adverse Events ,Enzyme inhibitors ,Bosutinib ,Brentuximab vedotin ,Controlled clinical trial (topic) ,Drug therapy ,Denosumab ,Monoclonal antibody ,Risk ,Dry skin ,Hormone antagonist ,Mtor ,phase iii as topic ,Dermatology ,Ceritinib ,Antibodies ,Her2 ,Internal medicine ,Cd52 ,Prospective study ,business.industry ,Adverse effects ,Egfr ,Carfilzomib ,Hormone antagonists ,Cabozantinib ,Denileukin diftitox ,phase ii as topic ,hormonal ,High risk patient ,Medical society ,Severity of illness index ,Bexarotene ,Systematic review ,Cancer patient ,Neoplasm ,Ibritumomab tiuxetan ,business ,Unindexed drug ,Prospective studies ,Meta analysis - Abstract
Background Many targeted therapies used in the treatment of cancer can lead to the development of xerosis, but the incidence and relative risk of xerosis have not been ascertained. Objective We conducted a systematic review and metaanalysis of clinical trials, to ascertain the incidence and risk of developing xerosis after taking anticancer drugs. Methods The PubMed (1966-October 2013), Web of Science (January 1998-October 2013), and American Society of Clinical Oncology abstracts (2004-2013) databases were searched for clinical trials of 58 targeted agents. Results were calculated using random or fixed effects models. Results The incidences of all- and high-grade xerosis were 17.9% (95% confidence interval [CI]: 15.6-20.4%) and 1.0% (95% CI: 0.9-1.5%), respectively. The risk of developing all-grade xerosis was 2.99 (95% CI: 2.0-4.3), and it varied across different drugs (P less than .001). Limitations The reporting of xerosis may vary among clinicians and institutions, and the incidence may be affected by age, concomitant medications, comorbidities, and underlying malignancies or skin conditions. Conclusion Patients receiving targeted therapies have a significant risk of developing xerosis. Patients should be counseled and treated early for this symptom to prevent suboptimal dosing and quality of life impairment.
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- 2015
25. Yeni Doğal Bir Ürün Olan KL-21 Kronik Lenfositik Lösemi Hücrelerinin Çoğalmasını İnhibe Etmekte ve Apoptozu İndüklemektedir
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Mustafa Yaşar, Yusuf Baran, Aysun Adan Gökbulut, TR119193, Adan Gökbulut, Aysun, Baran, Yusuf, Izmir Institute of Technology. Molecular Biology and Genetics, AGÜ, Yaşam ve Doğa Bilimleri Fakültesi, Moleküler Biyoloji ve Genetik Bölümü, and Izmir Isntitute of Technology
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lcsh:Internal medicine ,Chronic lymphocytic leukemia ,Cell ,Apoptosis ,Biology ,Cell Line ,Flow cytometry ,Cell cycle arrest ,Tumor protein ,Cell Line, Tumor ,medicine ,Humans ,Cytotoxic T cell ,lcsh:RC31-1245 ,Cell Proliferation ,Membrane Potential, Mitochondrial ,Biological Products ,Plants, Medicinal ,Dose-Response Relationship, Drug ,medicine.diagnostic_test ,Caspase 3 ,Plant Extracts ,lcsh:RC633-647.5 ,Cell growth ,Epithelial Cells ,Cell Cycle Checkpoints ,lcsh:Diseases of the blood and blood-forming organs ,Hematology ,Cell cycle ,medicine.disease ,Antineoplastic Agents, Phytogenic ,Leukemia, Lymphocytic, Chronic, B-Cell ,Molecular biology ,Neoplasm Proteins ,KL-21 ,medicine.anatomical_structure ,Cell culture ,Hematoloji ,Research Article - Abstract
Amaç: Bu çalışmanın amacı yeni bitkisel bir ürün olan KL-21’in [naturin doğal ürünler şirketi (İzmir, Türkiye) tarafından üretilen] 232B4 kronik lenfostik lösemi (KLL) hücreleri üzerindeki sitotoksik ve apoptotik etkilerinin araştırılmasıdır. Ayrıca, KL-21’in BEAS-2B sağlıklı insan bronşial epitelyum hücreleri üzerindeki sitotoksik etkisine de bakılmıştır. Gereç ve Yöntemler: KL-21’in sitotoksik etkisine MTT hücre çoğalma testiyle bakılmıştır. Kaspaz-3 enzim aktivitesindeki ve mitokondri membran potansiyelindeki değişimlere sırasıyla kaspaz-3 kolorimetrik testi ve JC-1 boyasına dayalı bir yöntem kullanılarak bakılmıştır. Apoptotik hücre popülasyonunu belirlemek amacıyla Anneksin 5-FITC/PI ikili boyama yöntemi kullanılmıştır. KL-21’in KLL hücrelerinin hücre siklusu üzerindeki etkilerine akım sitometresi ile bakılmıştır. Bulgular: KL-21’in KLL hücrelerinin çoğalması üzerine etkisi zamana ve doza bağımlı olarak artmıştır. Bununlar beraber, KL- 21’in özellikle yüksek konsantrasyonlarda KLL hücreleri ile karşılaştırıldığında BEAS-2B hücreleri üzerinde daha az sitotoksik etki gösterdiği saptanmıştır. Anneksin-5/PI ikili boyaması 232B4 hücrelerinde apoptotik hücre popülasyonunun arttığını göstermiştir. KL-21’in artan konsantrayonları kaspaz-3 enzim aktivitesini arttırmış ve mitokondri membran potansiyelindeki kayıpları indüklemiştir. KL-21 1 mg/ml konsantrasyonuna kadar G0/G1 fazındaki hücrelerin yüzdesinde küçük artışlara ve S fazındaki hücre popülasyonunda ise azalmalara neden olmaktadır. En yüksek konsantrasyonda ise hücrelerin büyük bir çoğunluğu G0/G1 fazında birikmiştir. Sonuç: Elde edilen sonuçlar, KL-21’in 232B4 KLL hücreleri üzerinde büyümeyi inhibe edici bir etkisi olduğunu göstermiştir. Ayrıca, K-21 apoptozu indüklemekte ve G0/G1 fazında hücre siklusunun tutulumuna neden olmaktadır., Objective: The aims of this study were to examine the cytotoxic and apoptotic effects of KL-21, a novel plant product (produced by naturin natural Products, İzmir, Turkey), on 232B4 chronic lymphocytic leukemia (CLL) cells and to determine the cytotoxic effects on healthy BEAS-2B human bronchial epithelial cells. Materials and Methods: The cytotoxic effect of KL-21 was determined by MTT cell proliferation assay. Changes in caspase-3 enzyme activity were measured using the caspase-3 colorimetric assay. Changes in mitochondrial membrane potential were determined using the J C-1 dye-based method. Annexin V-FITC/PI double staining was performed to measure the apoptotic cell population. Effects of KL-21 on cell cycle profiles of CLL cells were investigated by flow cytometry. Results: We detected time- and concentration-dependent increases in the cytotoxic effect of KL-21 on 232B4 CLL cells. However, we also showed that, especially at higher concentrations, KL-21 was less cytotoxic towards BEAS-2B healthy cells than towards CLL cells. Annexin-V/PI double staining results showed that the apoptotic cell population increased in 232B4 cells. Increasing concentrations of KL-21 increased caspase-3 enzyme activity and induced loss of mitochondrial membrane potential. KL-21 administration resulted in small increases in the percentage of the cells in the G0/G1 phase while it decreased the S phase cell population up to 1 mg/mL. At the highest concentration, most of the cells accumulated in the G0/G1 phase. Conclusion:KL-21 has a growth-inhibitory effect on 232B4 CLL cells. KL-21 causes apoptosis and cell cycle arrest at G0/G1.
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- 2015
26. Assessment of the anticancer mechanism of ferulic acid via cell cycle and apoptotic pathways in human prostate cancer cell lines
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Canan Eroğlu, Mücahit Seçme, Gulseren Bagci, and Yavuz Dodurga
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Male ,protein p53 ,Apoptosis ,CASP2 gene ,CASP8 gene ,TRADD gene ,IC50 ,Western blotting ,Invasion ,CDK6 gene ,X linked inhibitor of apoptosis ,genetics ,CYCS gene ,cancer cell ,TUNEL assay ,Prostate cancer ,General Medicine ,transcription factor E2F4 ,gene expression regulation ,Cell cycle ,cell invasion ,XIAP ,unclassified drug ,Neoplasm Proteins ,Gene Expression Regulation, Neoplastic ,CDKN1A gene ,priority journal ,cell cycle arrest ,cell cycle ,cell cycle checkpoint ,coumaric acid ,signal transduction ,CDK2 gene ,protein bcl 2 ,Coumaric Acids ,CCND2 gene ,heredity ,Cell Survival ,antineoplastic activity ,Biology ,FAS gene ,FASLG gene ,colony formation ,deoxyuridine triphosphate derivative ,Article ,reverse transcription polymerase chain reaction ,tumor protein ,Cell Line, Tumor ,LNCaP ,drug mechanism ,Humans ,Neoplasm Invasiveness ,Viability assay ,CCND3 gene ,human ,gene ,protein expression ,cell viability ,Cell Proliferation ,Cell growth ,tumor cell line ,CDKN1B gene ,Prostatic Neoplasms ,Ferulic acid ,Cell Cycle Checkpoints ,tumor invasion ,beta arrestin 1 ,Molecular biology ,CDK4 gene ,CASP1 gene ,CCND1 gene ,Terminal deoxynucleotidyl transferase ,drug effects ,gene expression ,RNA ,pathology ,biosynthesis - Abstract
Studies on genetic changes underlying prostate cancer and the possible signaling pathways are getting increased day by day, and new treatment methods are being searched for. The aim of the present study is to investigate the effects of ferulic acid (FA), a phenolic compound, on cell cycle, apoptosis, invasion, and colony formation in the PC-3 and LNCaP prostate cancer cells. The effect of FA on cell viability was determined via a 2,3-bis-(2-methoxy-4-nitro-5-sulfophenyl)-2H-tetrazolium-5-carboxanilide (XTT) method. Total RNA was isolated with Tri Reagent. Expression of 84 genes for both cell cycle and apoptosis separately was evaluated by reverse transcriptase PCR (RT-PCR). Protein expressions were evaluated by Western blot analysis. Furthermore, apoptotic effects of FA were observed with terminal deoxynucleotidyl transferase deoxyuridine triphosphate nick end labeling (TUNEL) assay. Effects of FA on cell invasion and colony formation were determined using Matrigel chamber and colony assay, respectively. The half maximal inhibitory concentration (IC50) dose of FA was found to be 300 µM in PC-3 cells and 500 µM in LNCaP cells. According to RT-PCR results, it was observed that FA inhibited cell proliferation by increasing the gene expressions of ATR, ATM, CDKN1A, CDKN1B, E2F4, RB1, and TP53 and decreasing the gene expressions of CCND1, CCND2, CCND3, CDK2, CDK4, and CDK6 in PC-3 cells. On the other hand, it was seen that FA suppressed cell proliferation by increasing in the gene expressions of CASP1, CASP2, CASP8, CYCS, FAS, FASLG, and TRADD and decreasing in the gene expressions of BCL2 and XIAP in LNCaP cells. In this study, protein expression of CDK4 and BCL2 genes significantly decreased in these cells. It could induce apoptosis in PC-3 and LNCaP cells. Also, it was observed that FA suppressed the invasion in PC-3 and LNCaP cells. Moreover, it suppressed the colony formation. In conclusion, it has been observed that FA may lead to cell cycle arrest in PC-3 cells while it may cause apoptosis in LNCaP cells. © 2015, International Society of Oncology and BioMarkers (ISOBM).
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- 2015
27. Novel antibodies directed against the human erythropoietin receptor : Creating a basis for clinical implementation
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Moshe Mittelman, Kyle B. Matchett, Herbert Lindner, Terence R.J. Lappin, Nathalie Ben-Califa, John F. Thompson, Fritz Grunert, Max Gassmann, Ludger Hengst, Perry Maxwell, Edith M. Schneider Gasser, Julián Aragonés, Mohamed El-Tanani, Markus Thiersch, Heidelinde Jaekel, André Bernardini, Alexandra E. Irvine, Joachim Fandrey, Robert J. G. Cuthbert, Ulf Brockmeier, Florinda Meléndez-Rodríguez, David Dangoor, Drorit Neumann, Howard S. Oster, and Anne E. Jordan
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cancer patient ,drug megadose ,synthesis ,receptor binding ,Medizin ,Fluorescent Antibody Technique ,fluorescent antibody technique ,animal cell ,Chemistry Techniques, Synthetic ,immunoprecipitation ,recombinant erythropoietin ,immune response ,Erythropoietin receptor ,Western blotting ,fluorescence activated cell sorting ,immunology ,Mice ,gene silencing ,Receptors, Erythropoietin ,Tumor Cells, Cultured ,genetics ,rat ,animal ,glycophorin C ,Risk assessment ,mass spectrometry ,biology ,medicine.diagnostic_test ,messenger RNA ,genetic immunization ,protein domain ,Antibodies, Monoclonal ,food and beverages ,Hematology ,Flow Cytometry ,anemia ,Neoplasm Proteins ,3. Good health ,purl.org/pe-repo/ocde/ford#3.02.06 [https] ,bone marrow biopsy ,tumor growth ,immunohistochemistry ,embryonic structures ,Immunohistochemistry ,nomenclature ,Antibody ,immunoreactivity ,cancer cell line ,signal transduction ,medicine.drug ,high performance liquid chromatography ,medicine.drug_class ,Molecular Sequence Data ,Cancer anaemia ,STAT5 protein ,Immunofluorescence ,Monoclonal antibody ,Risk Assessment ,Article ,cancer growth ,animal tissue ,tumor protein ,Terminology as Topic ,pleiotropy ,medicine ,Immunoprecipitation ,Humans ,Animals ,Gene Silencing ,human ,Amino Acid Sequence ,procedures ,immunofluorescence ,mouse ,Janus kinase 2 ,nonhuman ,cancer immunization ,human cell ,Cancer ,tumor cell culture ,medicine.disease ,human tissue ,Rats ,monoclonal antibody ,Erythropoietin ,Polyclonal antibodies ,molecular genetics ,Immunology ,biology.protein ,biosynthesis ,metabolism - Abstract
Recombinant human erythropoietin (rHuEPO) is an effective treatment for anaemia but concerns that it causes disease progression in cancer patients by activation of EPO receptors (EPOR) in tumour tissue have been controversial and have restricted its clinical use. Initial clinical studies were flawed because they used polyclonal antibodies, later shown to lack specificity for EPOR. Moreover, multiple isoforms of EPOR caused by differential splicing have been reported in cancer cell lines at the mRNA level but investigations of these variants and their potential impact on tumour progression, have been hampered by lack of suitable antibodies. The EpoCan consortium seeks to promote improved pathological testing of EPOR, leading to safer clinical use of rHuEPO, by producing well characterized EPOR antibodies. Using novel genetic and traditional peptide immunization protocols, we have produced mouse and rat monoclonal antibodies, and show that several of these specifically recognize EPOR by Western blot, immunoprecipitation, immunofluorescence, flow cytometry and immunohistochemistry in cell lines and clinical material. Widespread availability of these antibodies should enable the research community to gain a better understanding of the role of EPOR in cancer, and eventually to distinguish patients who can be treated safely by rHuEPO from those at increased risk from treatment.
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- 2015
28. Diffüz Büyük B-Hücreli Lenfomada GADD45? Metilasyonunun Olası Rolü: Lenfoma Progresyonunu ve Doku Tutulumunu Etkiler mi?
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Mehmet Hilmi Dogu, Emre Tepeli, Vildan Caner, Sibel Hacioglu, Gulseren Bagci, Nilay Şen Türk, Ismail Sari, Ikbal Cansu Baris, Ali Keskin, Ozge Can, and Ozan Cetin
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Male ,Pathology ,very elderly ,Nucleic Acid Denaturation ,preschool child ,Lymphoid hyperplasia ,Pseudolymphoma ,immune system diseases ,hemic and lymphatic diseases ,middle aged ,DNA denaturation ,genetics ,Genetik ve Kalıtım ,Hücre Biyolojisi ,Hematoloji ,Onkoloji ,Patoloji ,high resolution melting analysis ,Child ,Promoter Regions, Genetic ,comparative study ,Regulation of gene expression ,Aged, 80 and over ,clinical article ,large cell lymphoma ,larynx squamous cell carcinoma ,DNA methylation ,adult ,disease course ,Intracellular Signaling Peptides and Proteins ,Hematology ,Methylation ,lcsh:Diseases of the blood and blood-forming organs ,Diffuse large B-cell lymphoma ,gene expression regulation ,DNA, Neoplasm ,Cell cycle ,GADD45? ,unclassified drug ,Neoplasm Proteins ,Gene Expression Regulation, Neoplastic ,aged ,female ,Organ Specificity ,Child, Preschool ,immunohistochemistry ,Disease Progression ,young adult ,GADD45γ ,Lymphoma, Large B-Cell, Diffuse ,medicine.symptom ,cancer tissue ,Research Article ,medicine.medical_specialty ,lcsh:Internal medicine ,Adolescent ,Biology ,Article ,cancer growth ,GADD45G protein, human ,growth arrest and DNA damage inducible protein 45 gamma ,promoter region ,tumor protein ,medicine ,Humans ,signal peptide ,controlled study ,Epigenetics ,human ,lcsh:RC31-1245 ,lymphoid tissue ,protein methylation ,protein expression ,lcsh:RC633-647.5 ,growth arrest and DNA damage inducible protein 45 ,cancer staging ,disease association ,antibody specificity ,Infant ,lymphoid hyperplasia ,DNA ,medicine.disease ,DNA isolation ,human tissue ,diffuse large B cell lymphoma ,Lymphoma ,physiology ,pathology ,biosynthesis ,metabolism - Abstract
Diffuse large B-cell lymphoma (DLBCL) is the most common type of non-Hodgkin lymphoma among adults and is characterized by heterogeneous clinical, immunophenotypic, and genetic features. Different mechanisms deregulating cell cycle and apoptosis play a role in the pathogenesis of DLBCL. Growth arrest DNA damage-inducible 45 (GADD45γ) is an important gene family involved in these mechanisms. The aims of this study are to determine the frequency of GADD45γ methylation, to evaluate the correlation between GADD45γ methylation and protein expression, and to investigate the relation between methylation status and clinicopathologic parameters in DLBCL tissues and reactive lymphoid node tissues from patients with reactive lymphoid hyperplasia.Thirty-six tissue samples of DLBCL and 40 nonmalignant reactive lymphoid node tissues were analyzed in this study. Methylation-sensitive high-resolution melting analysis was used for the determination of GADD45γ methylation status. The GADD45γ protein expression was determined by immunohistochemistry.GADD45γ methylation was frequent (50.0%) in DLBCL. It was also significantly higher in advanced-stage tumors compared with early-stage (p=0.041). In contrast, unmethylated GADD45γ was associated with nodal involvement as the primary anatomical site (p=0.040).The results of this study show that, in contrast to solid tumors, the frequency of GADD45γ methylation is higher and this epigenetic alteration of GADD45γ may be associated with progression in DLBCL. In addition, nodal involvement is more likely to be present in patients with unmethylated GADD45γ.Amaç: Diffüz büyük B-hücreli lenfoma (DBBHL) yetişkin bireylerde Hodgkin-dışı lenfomaların en yaygın tipidir ve klinik, immünofenotipik ve genetik özellikler açısından heterojen özellikler taşıması ile karakterizedir. DBBHL patogenezinde hücre döngüsü ve apoptoz regülasyonunu bozan farklı mekanizmalar rol oynamaktadır. Growth arrest DNA damage-inducible 45 (GADD45γ), bu mekanizmalarda yer alan önemli bir gen ailesidir. Bu çalışmanın amaçları DBBHL doku örnekleri ve reaktif lenfoid hiperplazili bireylerin reaktif lenfoid doku örneklerinde GADD45γ metilasyon sıklığını belirlemek, GADD45γ metilasyonu ile protein ekspresyonu arasındaki ilişkiyi değerlendirmek ve DBBHL olgularında metilasyon durumunun klinikopatolojik parametrelerle ilişkisini araştırmaktır. Gereç ve Yöntemler: Bu çalışmada 36 adet DBBHL doku örnekleri ve 40 adet malign-olmayan reaktif lenfoid doku örnekleri analiz edildi. GADD45γ metilasyon durumunu belirlemek için metilasyona-duyarlı yüksek çözünürlüklü erime eğrisi analizi kullanıldı. GADD45γ protein ekspresyonu immünohistokimyasal analiz ile belirlendi. Bulgular: DBBHL’de GADD45γ metilasyonunun sık olduğu belirlendi (%50). Aynı zamanda, erken evre ile karşılaştırıldığında ileri evre tümörlerde GADD45γ metilasyonu istatistiksel olarak anlamlı düzeyde yüksekti (p=0,041). Ancak, GADD45γ metilasyon yokluğunun primer anatomik yerleşim olarak nodal tutulumla ilişkili olduğu belirlendi (p=0,040). Sonuç: Bu çalışmanın sonuçları solid tümörlerin aksine, DBBHL’de GADD45γ metilasyon sıklığının yüksek olduğunu ve GADD45γ geninde gözlenen bu epigenetik değişimin, hastalığın progresyonu ile ilişkili olabileceğini göstermektedir. Buna ek olarak, nodal tutulum daha çok GADD45γ metile olmayan olgularda gözlenmektedir.
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- 2015
29. Genome-Wide Studies Reveal that H3K4me3 Modification in Bivalent Genes Is Dynamically Regulated during the Pluripotent Cell Cycle and Stabilized upon Differentiation
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Mark Fitzgerald, Gary S. Stein, Andre J. van Wijnen, Sayyed K. Zaidi, Jennifer VanOudenhove, Jane B. Lian, Janet L. Stein, Hai Wu, Troy W. Whitfield, Martin Montecino, and Rodrigo A. Grandy
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0301 basic medicine ,Cellular differentiation ,Human Embryonic Stem Cells ,Cell Line ,Epigenesis, Genetic ,Histones ,Tumor protein ,MLL2 protein, human ,03 medical and health sciences ,Histone lysine methyltransferase ,Humans ,Epigenetics ,Induced pluripotent stem cell ,Molecular Biology ,Genetics ,biology ,MLL protein, human ,Cell Cycle ,Gene Expression Regulation, Developmental ,Cell Differentiation ,Histone-Lysine N-Methyltransferase ,Articles ,Cell Biology ,DNA Methylation ,Chromatin ,DNA binding protein ,Neoplasm Proteins ,DNA-Binding Proteins ,Histone ,030104 developmental biology ,DNA methylation ,biology.protein ,H3K4me3 ,Mixed lineage leukemia protein ,Myeloid-Lymphoid Leukemia Protein ,Genome-Wide Association Study ,Bivalent chromatin - Abstract
Indexación: Web of Science; Scopus. Stem cell phenotypes are reflected by posttranslational histone modifications, and this chromatin-related memory must be mitotically inherited to maintain cell identity through proliferative expansion. In human embryonic stem cells (hESCs), bivalent genes with both activating (H3K4me3) and repressive (H3K27me3) histone modifications are essential to sustain pluripotency. Yet, the molecular mechanisms by which this epigenetic landscape is transferred to progeny cells remain to be established. By mapping genomic enrichment of H3K4me3/H3K27me3 in pure populations of hESCs in G2, mitotic, and G1 phases of the cell cycle, we found striking variations in the levels of H3K4me3 through the G2-M-G1 transition. Analysis of a representative set of bivalent genes revealed that chromatin modifiers involved in H3K4 methylation/demethylation are recruited to bivalent gene promoters in a cell cycle-dependent fashion. Interestingly, bivalent genes enriched with H3K4me3 exclusively during mitosis undergo the strongest upregulation after induction of differentiation. Furthermore, the histone modification signature of genes that remain bivalent in differentiated cells resolves into a cell cycle-independent pattern after lineage commitment. These results establish a new dimension of chromatin regulation important in the maintenance of pluripotency http://mcb.asm.org/content/36/4/615
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- 2015
30. Tissue-based map of the human proteome
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Uhlén, Mathias, Fagerberg, Linn, Hallström, Björn M, Lindskog, Cecilia, Oksvold, Per, Mardinoglu, Adil, Sivertsson, Åsa, Kampf, Caroline, Sjöstedt, Evelina, Asplund, Anna, Olsson, IngMarie, Edlund, Karolina, Lundberg, Emma, Navani, Sanjay, Szigyarto, Cristina Al-Khalili, Odeberg, Jacob, Djureinovic, Dijana, Takanen, Jenny Ottosson, Hober, Sophia, Alm, Tove, Edqvist, Per-Henrik, Berling, Holger, Tegel, Hanna, Mulder, Jan, Rockberg, Johan, Nilsson, Peter, Schwenk, Jochen M, Hamsten, Marica, von Feilitzen, Kalle, Forsberg, Mattias, Persson, Lukas, Johansson, Fredric, Zwahlen, Martin, von Heijne, Gunnar, Nielsen, Jens, Pontén, Fredrik, Uhlén, Mathias, Fagerberg, Linn, Hallström, Björn M, Lindskog, Cecilia, Oksvold, Per, Mardinoglu, Adil, Sivertsson, Åsa, Kampf, Caroline, Sjöstedt, Evelina, Asplund, Anna, Olsson, IngMarie, Edlund, Karolina, Lundberg, Emma, Navani, Sanjay, Szigyarto, Cristina Al-Khalili, Odeberg, Jacob, Djureinovic, Dijana, Takanen, Jenny Ottosson, Hober, Sophia, Alm, Tove, Edqvist, Per-Henrik, Berling, Holger, Tegel, Hanna, Mulder, Jan, Rockberg, Johan, Nilsson, Peter, Schwenk, Jochen M, Hamsten, Marica, von Feilitzen, Kalle, Forsberg, Mattias, Persson, Lukas, Johansson, Fredric, Zwahlen, Martin, von Heijne, Gunnar, Nielsen, Jens, and Pontén, Fredrik
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Resolving the molecular details of proteome variation in the different tissues and organs of the human body will greatly increase our knowledge of human biology and disease. Here, we present a map of the human tissue proteome based on an integrated omics approach that involves quantitative transcriptomics at the tissue and organ level, combined with tissue microarray-based immunohistochemistry, to achieve spatial localization of proteins down to the single-cell level. Our tissue-based analysis detected more than 90% of the putative protein-coding genes. We used this approach to explore the human secretome, the membrane proteome, the druggable proteome, the cancer proteome, and the metabolic functions in 32 different tissues and organs. All the data are integrated in an interactive Web-based database that allows exploration of individual proteins, as well as navigation of global expression patterns, in all major tissues and organs in the human body., QC 20150216
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- 2015
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31. Snail-mediated Cripto-1 repression regulates the cell cycle and epithelial-mesenchymal transition-related gene expression
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Vijaya S. Pilli, Gopala Krishna Aradhyam, Bhanu P. Kotha, and Kartik Gupta
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Transcription, Genetic ,Cellular differentiation ,epithelial mesenchymal transition ,Snail ,Cripto ,Biochemistry ,cell motion ,Structural Biology ,Cell Movement ,Neoplasms ,genetics ,transcription factor ,Genetics ,Epithelial–mesenchymal transition ,Cell Cycle ,repressor protein ,Cell Differentiation ,glycosylphosphatidylinositol anchored protein ,Cell biology ,Neoplasm Proteins ,HEK293 cell line ,Intercellular Signaling Peptides and Proteins ,Reprogramming ,Transcription ,hormones, hormone substitutes, and hormone antagonists ,Epithelial-Mesenchymal Transition ,Biophysics ,Morphogenesis ,Cell fate determination ,Biology ,GPI-Linked Proteins ,TDGF1 protein, human ,tumor protein ,biology.animal ,Cell Line, Tumor ,parasitic diseases ,Humans ,signal peptide ,human ,Molecular Biology ,Transcription factor ,genetic transcription ,tumor cell line ,Cell Biology ,Cripto-1 ,Repressor Proteins ,HEK293 Cells ,physiology ,Snail Family Transcription Factors ,biosynthesis ,metabolism ,neoplasm ,Transcription Factors - Abstract
Transcription factor Snail mediates epithelial to mesenchymal transitions (EMT) by coordinate repression of epithelial markers, facilitating mass cell movement during germ layer formation. Aberrant reprogramming in its signaling pathways causes metastatic cancer. Snail's involvement in "fate-changing" decisions is however not understood. Cripto-1 shares a common temporal expression pattern with Snail during development. While Cripto-1 is required for mammary morphogenesis and hematopoietic stem cell renewal, its unregulated expression causes metastatic cancers. Therefore, we suspected that Snail regulates the expression of Cripto-1 controlling decisions such as motility, transformation and differentiation. We demonstrate that Snail represses Cripto-1 gene by direct transcriptional interaction and propose a novel mechanism by which it co-ordinately regulates cell fate decisions during development and could be causal of cancers. � 2015 Federation of European Biochemical Societies.
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- 2014
32. A brilliant breakthrough in OI type V
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Lazarus, Syndia, Moffatt, Pierre, Duncan, Emma, Thomas, Gethin, Lazarus, Syndia, Moffatt, Pierre, Duncan, Emma, and Thomas, Gethin
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Interferon-induced transmembrane protein 5 or bone-restricted i ifitm-like gene (Bril) was first identified as a bone gene in 2008, although no in vivo role was identified at that time. A role in human bone has now been demonstrated with a number of recent studies identifying a single point mutation in Bril as the causative mutation in osteogenesis imperfecta type V (OI type V). Such a discovery suggests a key role for Bril in skeletal regulation, and the completely novel nature of the gene raises the possibility of a new regulatory pathway in bone. Furthermore, the phenotype of OI type V has unique and quite divergent features compared with other forms of OI involving defects in collagen biology. Currently it appears that the underlying genetic defect in OI type V may be unrelated to collagen regulation, which also raises interesting questions about the classification of this form of OI. This review will discuss current knowledge of OI type V, the function of Bril, and the implications of this recent discovery.
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- 2014
33. Valproic acid inhibits the proliferation of SHSY5Y neuroblastoma cancer cells by downregulating URG4/URGCP and CCND1 gene expression
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Gulseren Bagci, Tugba Koc, Gulsah Gundogdu, Yavuz Dodurga, N. Lale Satiroglu-Tufan, Volkan Tekin, and Vural Kucukatay
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protein p53 ,p65 gene ,cyclin D1 ,genetic analysis ,Neuroblastoma ,gene silencing ,URG4/URGCP ,p21 gene ,Gene expression ,Bax gene ,Valproic acid ,genetics ,Cyclin D1 ,tumor suppressor gene ,antineoplastic agent ,Regulation of gene expression ,Neurons ,drug cytotoxicity ,apoptosis regulatory protein ,article ,General Medicine ,gene expression regulation ,proto oncogene ,neuroblastoma cell line ,Neoplasm Proteins ,Gene Expression Regulation, Neoplastic ,cell death ,cell cycle arrest ,real time polymerase chain reaction ,URG4 gene ,lipids (amino acids, peptides, and proteins) ,RELA protein, human ,Signal transduction ,nerve cell ,down regulation ,protein Bax ,signal transduction ,Signal Transduction ,protein bcl 2 ,Cell Survival ,synaptotagmin I ,transcription factor RelA ,Antineoplastic Agents ,antineoplastic activity ,Biology ,tumor protein ,Cell Line, Tumor ,Genetics ,medicine ,gene expression profiling ,Gene silencing ,Humans ,controlled study ,human ,gene ,Molecular Biology ,protein expression ,antagonists and inhibitors ,Cell Proliferation ,protein p21 ,human cell ,Valproic Acid ,tumor cell line ,Transcription Factor RelA ,CCND1 protein, human ,URG4 protein, human ,IC 50 ,medicine.disease ,CCND1 gene ,Cell culture ,concentration response ,drug effects ,Cancer cell ,Cancer research ,gene expression ,agonists ,pathology ,Apoptosis Regulatory Proteins ,metabolism - Abstract
Valproic acid (VPA), used for the treatment of epilepsy and bipolar disorder, regulates several signaling pathways in brain cells. The up-regulated gene 4 (URG4/URGCP) is a novel gene located on 7p13. URG4/URGCP stimulates cyclin D1 (CCND1) mRNA expression, and URG4/URGCP silencing diminishes CCND1 mRNA expression in HepG2 cells. This study was performed to investigate the anti-cancer mechanism of action of VPA by analyzing the expression of novel gene URG4/URGCP, CCND1, p21, p53, p65 (RelA), Bax, and Bcl-2 in SHSY5Y neuroblastoma (NB) cancer cells. Cytotoxic effects of VPA in SHSY5Y were noticed in time and dose dependent manner with the IC50 doses within the range of 0.5-10 mM. IC50 doses in the SHSY5Y were detected as 7.5 mM. Expression profiles were determined by semi quantitative RT-PCR and URG4/URGCP protein change by western blot analysis. Our results suggest that VPA induces cell cycle arrest in SHSY5Y due to the decrease in URG4/URGCP, CCND1 gene expression and the increase in p65. To conclude, VPA may be a prospective agent for the treatment of NB as a single agent or in combination with other drugs. Thus, more studies should be designed to find a safe dose with the best effects of VPA. © 2014 Springer Science+Business Media.
- Published
- 2013
34. Investigation of microRNA expression changes in HepG2 cell line in presence of URG4/URGCP and in absence of URG4/URGCP suppressed by RNA interference
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Cigir Biray Avci, N. Lale Satiroglu-Tufan, Yavuz Dodurga, Gulseren Bagci, Cumhur Gündüz, and G. Nilufer Yonguc
- Subjects
Down-Regulation ,Biology ,URG4/URGCP ,RNA interference ,tumor protein ,microRNA ,gene expression profiling ,Gene silencing ,Humans ,genetics ,human ,RNA, Messenger ,Molecular Biology ,Gene ,miRNA ,Regulation of gene expression ,Messenger RNA ,cell strain HepG2 ,messenger RNA ,article ,RNA ,URG4 protein, human ,General Medicine ,gene expression regulation ,Hep G2 Cells ,Hepatocellular carcinoma cell line ,Molecular biology ,Cell biology ,Neoplasm Proteins ,Up-Regulation ,Gene expression profiling ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,siRNA ,down regulation ,metabolism ,upregulation - Abstract
Hepatocellular carcinoma (HCC) originates from liver cells and is one of the most common malignant cancers in the world. microRNAs (miRNA), are single strand non-coding RNA molecules with the length of 18-25 nucleotides. miRNAs play an important role in the development of HCC, i.e., miRNAs have a significant impact on multistep hepatocellular carcinogenesis including cellular migration and invasion. URG4/URGCP (up-regulated gene-4/upregulator of cell proliferation) is up-regulated in the presence of HBxAg and has been identified and characterized by Satiroglu-Tufan et al. The full-length URG4/URGCP is 3.607 kb. Overexpression of URG4/URGCP in the presence of HBV X protein may function as a putative oncogene that significantly contributes to multi-step hepatocarcinogenesis. In this study, we aimed to investigate potential miRNA expression changes in HepG2 cell line model system in the presence of URG4/URGCP and in the absence of URG4/URGCP, which was suppressed by RNA interference. To functionally characterize URG4/URGCP, independent cultures of HepG2 cells were stably transfected with pcDNA3 or pcDNA3-URG4/URGCP. Relative quantification of whole genome miRNAs was analyzed by RT-PCR using human whole genome miRNA qPCR profiling kits. Among the 1,034 human miRNAs investigated by the arrays, 77 miRNAs were up-regulated and nine miRNAs were down-regulated in the presence of URG4/URGCP. In conclusion, we have analyzed miRNA profiles in HepG2 cells in presence or absence of URG4/URGCP gene using RNA interference. Some of these miRNAs may play roles in URG4/URGCP gene related disease development through the regulation of different signaling pathways. © 2012 Springer Science+Business Media Dordrecht.
- Published
- 2012
35. The expression of URGCP gene in prostate cancer cell lines: correlation with rapamycin
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Cigir Biray Avci, Yavuz Dodurga, N. Lale Satiroglu Tufan, Cumhur Gündüz, and Sunde Yilmaz Susluer
- Subjects
Male ,medicine.medical_specialty ,Cell Survival ,Gene Expression ,Biology ,urologic and male genital diseases ,Inhibitory Concentration 50 ,tumor protein ,DU145 ,Internal medicine ,Cell Line, Tumor ,LNCaP ,Gene expression ,Genetics ,medicine ,Cytotoxic T cell ,Humans ,genetics ,human ,Viability assay ,neoplasms ,Molecular Biology ,Regulation of gene expression ,Sirolimus ,prostate tumor ,Antibiotics, Antineoplastic ,rapamycin ,Cell growth ,drug effect ,article ,tumor cell line ,Prostatic Neoplasms ,URG4 protein, human ,IC 50 ,gene expression regulation ,General Medicine ,Molecular biology ,Neoplasm Proteins ,Gene Expression Regulation, Neoplastic ,Endocrinology ,Cell culture ,antineoplastic antibiotic ,metabolism - Abstract
Molecular targets in prostate cancer are continually being explored, for which there are currently few therapeutic options. Rapamycin (RPM) is an antifungal macrolide antibiotic isolated from Streptomyces hygroscopicus which can inhibit the G1 to S transition. URGCP (upregulator of cell proliferation) is a novel gene located on chromosome 7p13. We aimed to investigate the role of URGCP gene expression changes in PC3, DU145, and LNCAP cell lines with/out RPM. Average cell viability and cytotoxic effect of rapamycin were investigated at 24 h intervals for three days by using Trypan blue dye exclusion test and XTT assay. Cytotoxic effects of rapamycin in DU145, PC3 and LNCAP cells were detected in time and dose dependent manner with the IC(50) doses within the range of 1-100 nM. As the results were evaluated, IC(50) doses in the DU145, PC3, and LNCaP cells were detected as 10, 25, and 50 nM, respectively. The mean relative ratios of URGCP gene expression in DU145, LNCAP and PC3 cells were found as -1.48, 6.59 and -13.00, respectively, when compared to rapamycin-free cells. The False Discovery Rate adjusted p value in DU145, LNCAP and PC3 were 1.25 × 10(-5), 2.20 × 10(-8) and 6.20 × 10(-9), respectively. When the URGCP gene expression level is compared between the dose and control group, we found that URGCP gene expression was significantly decreased in dose groups of DU145 and PC3 cells.
- Published
- 2011
36. RNA interference-mediated URG4 gene silencing diminishes cyclin D1 mRNA expression in HepG2 cells
- Author
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Gok D, Cetinkaya A, Feitelson Ma, Yavuz Dodurga, and Satiroglu-Tufan Nl
- Subjects
Small interfering RNA ,RNA-induced silencing complex ,cyclin D1 ,Biology ,reverse transcription polymerase chain reaction ,gene silencing ,Cyclin D1 ,RNA interference ,tumor protein ,Gene expression ,Genetics ,Gene silencing ,Humans ,genetics ,human ,Gene Silencing ,RNA, Messenger ,Molecular Biology ,Cell Proliferation ,Gene knockdown ,cell strain HepG2 ,messenger RNA ,Reverse Transcriptase Polymerase Chain Reaction ,article ,URG4 protein, human ,General Medicine ,Hep G2 Cells ,Cell biology ,Neoplasm Proteins ,Cyclin D1/*genetics ,Gene Silencing/physiology ,Neoplasm Proteins/*genetics ,RNA Interference/*physiology ,RNA, Messenger/*genetics ,RNA silencing ,cell proliferation ,physiology ,RNA Interference - Abstract
Up-regulated gene 4 (URG4), stimulated by HBxAg, is a novel gene located on chromosome 7 (7p13). The full-length URG4 clone is 3.607 kb and encodes a polypeptide of 922 amino acids, with a molecular weight of 104 kDa (GeneID: 55665). It promotes cell growth, growth factor-independent survival, and anchorage-independent growth in HepG2 cells, and it accelerates tumor formation in nude mice. Hence, URG4 may be a natural effector of HBxAg and a putative oncogene that contributes to multi-step hepatocarcinogenesis. Cyclin D1 is frequently over-expressed in hepatocellular carcinoma, exhibiting a number of malignant phenotypes. We found that down-regulation of URG4 through RNA interference-mediated silencing suppressed cell proliferation in HepG2 cells. Over-expression of URG4 up-regulated cyclin D1 mRNA expression, whereas RNA interference-mediated URG4 silencing diminished cyclin D1 mRNA expression in HepG2 cells. The data suggest that URG4 may play an important role in the development of hepatocellular carcinoma by partially regulating the expression of cyclin D1 and has potential for use as a therapeutic target for hepatocellular carcinoma.
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- 2010
37. Loss of Kindlin-3 in LAD-III eliminates LFA-1 but not VLA-4 adhesiveness developed under shear flow conditions
- Author
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Ronit Pasvolsky, Memet Aker, Valentin Grabovsky, Eugenia Manevich-Mendelson, Maria Alessandra Rosenthal-Allieri, Ronen Alon, Amos Etzioni, Sara W. Feigelson, Ziv Shulman, Adi Mory, Sara Sebnem Kilic, Shifra Ben-Dor, Alain Bernard, Markus Moser, Uludağ Üniversitesi/Tıp Fakültesi/Pediatrik İmmünoloji Anabilim Dalı., Kılıç, Sara Şebnem, and AAH-1658-2021
- Subjects
Male ,Chemokine ,Unclassified drug ,Mouse ,RNA splicing ,T-Lymphocytes ,Leukocyte-Adhesion Deficiency Syndrome ,Leukocyte adhesion deficiency ,Integrin alpha4beta1 ,Protein depletion ,Biochemistry ,Integrin activation ,Cell protein ,Stop codon ,Caidag-gefi ,Tumor protein ,Shear flow ,Cell expansion ,Mice ,Kindlin 3 ,T lymphocyte ,Very late activation antigen 4 ,Guanine Nucleotide Exchange Factors ,MIG2B protein, human ,Lymphocyte function-associated antigen 1 ,Priority journal ,Llymphocyte arrest ,Cell adhesion molecule ,Beta(1) integrin ,Hematology ,Lymphocyte Function-Associated Antigen-1 ,Cell biology ,Lymphocyte function associated antigen 1 ,Neoplasm Proteins ,Talin ,Integrins ,Vascular cell adhesion molecule 1 ,Codon, Terminator ,Effector cell ,Female ,Chemokines ,Human ,T-cell adhesion ,Immunology ,Integrin ,Vascular Cell Adhesion Molecule-1 ,Leukocyte Rolling ,Biology ,Article ,Binding site ,medicine ,Genetics ,Cell Adhesion ,Animals ,Humans ,Cell adhesion ,Domain ,Congenital disorder of glycosylation type 1 ,RAP1GDS1 protein, human ,Animal ,VLA-4 ,Vla-4-mediated adhesion ,Leukocyte activation ,Membrane Proteins ,Cell Biology ,medicine.disease ,Metabolism ,Human cell ,Leukocyte adhesion deficiency type 3 ,Leukocyte adhesion ,Membrane protein ,Mutation ,biology.protein ,Comparative study ,RNA Splice Sites ,Paxillin ,T lymphocyte receptor ,Controlled study ,Guanine nucleotide exchange factor - Abstract
Leukocyte adhesion deficiency (LAD)-III is associated with homozygous stop codon mutations in Kindlin-3, the hematopoietic member of the Kindlin family of integrin coactivators. In addition, a subgroup of LAD-III patients has a homozygous splice junction mutation in and reduced expression of the Rap-1 guanine nucleotide exchange factor, CalDAG-GEFI (CDGI). In this study, we compared the adhesive properties of the leukocyte function-associated antigen-1 (LFA-1) and very late activation antigen-4 (VLA-4) integrins in both primary and activated leukocytes derived from these 2 LAD-III subgroups. Primary lymphocytes lacking both Kindlin-3 and CDGI lost all firm T-cell receptor-stimulated LFA-1 adhesiveness, in contrast to LAD-III lymphocytes deficient in Kindlin-3 alone. Effector T cells expanded from all tested LAD-III variants expressed normal CDGI, but lacked Kindlin-3. These Kindlin-3-null effector T cells exhibited total loss of inside-out LFA-1 activation by chemokine signals as well as abrogated intrinsic LFA-1 adhesiveness. Surprisingly, VLA-4 in Kindlin-3-null resting or effector lymphocytes retained intrinsic rolling adhesions to vascular cell adhesion molecule-1 and exhibited only partial defects in chemokine-stimulated adhesiveness to vascular cell adhesion molecule-1. Deletion of the putative beta(1) Kindlin-3 binding site also retained VLA-4 adhesiveness. Thus, our study provides the first evidence that Kindlin-3 is more critical to LFA-1 than to VLA-4-adhesive functions in human lymphocytes. Israel Science Foundation US-Israel Binational Science Foundation Minerva Foundation, Germany
- Published
- 2009
38. Context-dependent action of transforming growth factor β family members on normal and cancer stem cells
- Author
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Caja, Laia, Kahata, Kaoru, Moustakas, Aristidis, Caja, Laia, Kahata, Kaoru, and Moustakas, Aristidis
- Abstract
The transforming growth factor β (TGFβ) family embraces many growth factors including the Activins and bone morphogenetic proteins (BMPs). The pathways mediated by these growth factors are implicated in many fundamental biological processes such as early embryonic development, organ morphogenesis and adult tissue homeostasis and in a large number of pathologies including cancer. The action of these pathways is often contextual, which means that different cell types present different physiological responses to these ligands or that the response of one cell type to a certain ligand differs depending on the presence of other signaling proteins that stimulate the target cell together with TGFβ/BMP. The latter usually reflects developmental stage or progression to a specific pathological stage. Not only diverse growth factors and cytokines can influence the response of tissues to TGFβ/BMP, but a single cell type may also show drastically different physiological outcomes to TGFβ or Activin signaling as compared to BMP signaling. This review describes differential physiological outcomes of TGFβ and BMP signaling in normal embryonic or adult stem cells and eventually in cancer stem cells and the process of epithelial-mesenchymal transition. We also summarize evidence on the mechanistic antagonism between TGFβ and BMP signaling as established in vascular differentiation and the progression of tissue fibrosis and cancer. The article ends by discussing possible advantages that the acquired knowledge of these signaling mechanisms offers to new regimes of cancer therapy and the ever-lasting problem of drug resistance elicited by tumor initiating cells.
- Published
- 2012
- Full Text
- View/download PDF
39. Monocyte-derived dendritic cells loaded with a mixture of apoptotic/ necrotic melanoma cells efficiently cross-present gp100 and MART-1 antigens to specific CD8+ T lymphocytes
- Author
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von Euw, E.M., Barrio, M.M., Furman, D., Bianchini, M., Levy, E.M., Yee, C., Li, Y., Wainstok, R., and Mordoh, J.
- Subjects
chemokine receptor CCR7 ,cell cloning ,HLA antigen class 3 ,Time Factors ,HLA antigen class 2 ,cell migration ,HLA antigen class 1 ,B7 antigen ,glycoprotein gp 100 ,cell maturation ,radiation exposure ,Apoptosis ,cytotoxic T lymphocyte ,CD8-Positive T-Lymphocytes ,Monocytes ,CD40 antigen ,fluorescence activated cell sorting ,necrosis ,immunology ,Epitopes ,cell motion ,Cell Movement ,dendritic cell vaccine ,membrane protein ,CD8+ T lymphocyte ,CD83 antigen ,Melanoma ,time ,epitope ,Membrane Glycoproteins ,HLA A antigen ,drug effect ,article ,SILV protein, human ,phagocytosis ,Cell Differentiation ,melan A ,CCR7 protein, human ,ultrastructure ,Interleukin-12 ,unclassified drug ,Interleukin-10 ,Neoplasm Proteins ,cell death ,cell surface ,cytokine release ,dextran ,monocyte ,gamma interferon ,cancer vaccine ,coculture ,gp100 Melanoma Antigen ,melanoma cell ,Receptors, CCR7 ,in vitro study ,HLA antigen ,cell kinetics ,dendritic cell ,fluorescein isothiocyanate ,CD86 antigen ,Cross-Priming ,MART-1 Antigen ,tumor protein ,Antigens, Neoplasm ,Cell Line, Tumor ,Humans ,controlled study ,human ,electron microscopy ,cross presentation ,human cell ,chemokine ,gamma radiation ,tumor cell line ,Dendritic Cells ,vaccination ,gamma irradiation ,Coculture Techniques ,Gamma Rays ,cytology ,antigen specificity ,Chemokine CCL19 ,interleukin 12 ,macrophage inflammatory protein 3beta ,melanocyte protein Pmel 17 ,antigen expression ,cell vacuole ,pathology ,interleukin 10 ,tumor antigen ,MLANA protein, human ,upregulation - Abstract
Background: In the present study, we demonstrate, in rigorous fashion, that human monocyte-derived immature dendritic cells (DCs) can efficiently cross-present tumor-associated antigens when co-cultured with a mixture of human melanoma cells rendered apoptotic/necrotic by γ irradiation (Apo-Nec cells). Methods: We evaluated the phagocytosis of Apo-Nec cells by FACS after PKH26 and PKH67 staining of DCs and Apo-Nec cells at different times of coculture. The kinetics of the process was also followed by electron microscopy. DCs maturation was also studied monitoring the expression of specific markers, migration towards specific chemokines and the ability to cross-present in vitro the native melanoma-associated Ags MelanA/MART-1 and gp100. Results: Apo-Nec cells were efficiently phagocytosed by immature DCs (iDC) (55 ± 10.5%) at 12 hs of coculture. By 12-24 hs we observed digested Apo-Nec cells inside DCs and large empty vacuoles as part of the cellular processing. Loading with Apo-Nec cells induced DCs maturation to levels achieved using LPS treatment, as measured by: i) the decrease in FITC - Dextran uptake (iDC: 81 ± 5%; DC/Apo-Nec 33 ± 12%); ii) the cell surface up-regulation of CD80, CD86, CD83, CCR7, CD40, HLA-I and HLA-II and iii) an increased in vitro migration towards MIP-3β. DC/Apo-Nec isolated from HLA-A*0201 donors were able to induce >600 pg/ml IFN-γ secretion of CTL clones specific for MelanA/MART-1 and gp100 Ags after 6 hs and up to 48 hs of coculture, demonstrating efficient cross-presentation of the native Ags. Intracellular IL-12 was detected in DC/Apo-Nec 24 hs post-coculture while IL-10 did not change. Conclusion: We conclude thatthe use of a mixture of four apoptotic/ necrotic melanoma cell lines is a suitable source of native melanoma Ags that provides maturation signals for DCs, increases migration to MIP-3β and allows Ag cross-presentation. This strategy could be exploited for vaccination of melanoma patients. © 2007 von Euw et al; licensee BioMed Central Ltd. Fil:von Euw, E.M. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Barrio, M.M. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Levy, E.M. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
- Published
- 2007
40. An international initiative to identify genetic modifiers of cancer risk in BRCA1 and BRCA2 mutation carriers : The Consortium of Investigators of Modifiers of BRCA1 and BRCA2 (CIMBA)
- Author
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Chenevix-Trench, G., Milne, R. L., Antoniou, A. C., Couch, F. J., Easton, D. F., Goldgar, D. E., Chenevix-Trench, G., Milne, R. L., Antoniou, A. C., Couch, F. J., Easton, D. F., and Goldgar, D. E.
- Abstract
BRCA1 and BRCA2 mutations exhibit variable penetrance that is likely to be accounted for, in part, by other genetic factors among carriers. However, studies aimed at identifying these factors have been limited in size and statistical power, and have yet to identify any convincingly validated modifiers of the BRCA1 and BRCA2 phenotype. To generate sufficient statistical power to identify modifier genes, the Consortium of Investigators of Modifiers of BRCA1 and BRCA2 (CIMBA) has been established. CIMBA contains about 30 affiliated groups who together have collected DNA and clinical data from approximately 10,000 BRCA1 and 5,000 BRCA2 utation carriers. Initial efforts by CIMBA to identify modifiers of breast cancer risk for BRCA1 and BRCA2 mutation carriers have focused on validation of common genetic variants previously associated with risk in smaller studies of carriers or unselected breast cancers. Future studies will involve replication of findings from pathway-based and genome-wide association studies in both unselected and familial breast cancer. The identification of genetic modifiers of breast cancer risk for BRCA1 and BRCA2 mutation carriers will lead to an improved understanding of breast cancer and may prove useful for the determination of individualized risk of cancer amongst carriers.
- Published
- 2007
- Full Text
- View/download PDF
41. Proteome analysis reveals novel proteins associated with proliferation and differentiation of the colorectal cancer cell line Caco-2
- Author
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Helma Pluk, S. Jespersen, John P. Groten, Jack W. T. E. Vogels, Yvonne E.M. Dommels, Ben van Ommen, Marco Gaspari, Rob H. Stierum, Kitty C.M. Verhoeckx, and Taoufik Ouatas
- Subjects
intestine cell ,Cellular differentiation ,mitochondrial protein ,cell maturation ,Toxicology ,Biochemistry ,25-dihydroxyvitamin d-3 ,colon carcinogenesis ,Analytical Chemistry ,human colon-cancer ,cell strain CACO 2 ,glutathione transferase ,Protein disulfide-isomerase ,education.field_of_study ,pH ,nucleoside diphosphate kinase ,Tumor Protein, Translationally-Controlled 1 ,acid-binding-protein ,nucleotide ,glycolysis ,protein function ,priority journal ,liver protein ,carcinogenesis ,signal transduction ,Cell Division ,Nucleoside diphosphate kinase A ,phenotype ,nitric-oxide synthase ,Proteome analysis ,two dimensional gel electrophoresis ,Blotting, Western ,Biophysics ,creatine-kinase bb ,proteomics ,tumor protein ,Humans ,human ,education ,Molecular Biology ,protein expression ,Analytical research ,Toxicologie ,Mass spectrometry ,human cell ,genetic transcription ,Caco-2 ,gene-expression ,cell proliferation ,Translationally controlled tumour protein ,Cellular energy metabolism [UMCN 5.3] ,cell division ,fatty acid binding protein ,Proteome ,principal component analysis ,heat shock protein ,nucleotide metabolism ,Proteomics ,Western blotting ,actin dynamics ,protein folding ,Two-dimensional gel electrophoresis ,cell growth ,Principal Component Analysis ,biology ,article ,cytoskeleton ,Cell Differentiation ,1,25-dihydroxyvitamin d-3 ,matrix assisted laser desorption ionization time of flight mass spectrometry ,enolase ,microvillus ,Differentiation ,alkaline phosphatase ,alzheimers-disease brain ,colorectal cancer ,cofilin ,brush border ,down-regulation ,Heat shock protein ,controlled study ,cell culture ,creatine kinase ,glutathione s-transferases ,Alkaline Phosphatase ,isomerase ,Health Nutrition ,protein analysis ,physiology ,biology.protein ,cytology ,Caco-2 Cells ,metabolism ,disulfide - Abstract
Here, we describe a proteomics approach to study protein expression changes in differentiating Caco-2 cells. Caco-2 is a colorectal carcinoma cell line, which upon differentiation loses its tumorigenic phenotype and displays characteristics of mature enterocytes, including brush borders with microvilli. Cells were grown in culture flasks and harvested at different stages of differentiation (days post-confluence: -3, 0, 3, 7, 10, 14, and 18). Two-dimensional gel electrophoresis was used to analyse proteome changes. Approximately 1400 protein spots were detected within the Caco-2 proteome, within the pH 4-7 range. Two-dimensional gel electrophoresis allowed for the detection of 18 proteins from which the levels of expression were found to be associated with differentiation. Of these proteins, 11 were identified by means of MALDI-TOF or NANO-ESI-MS/MS mass spectrometry and include liver fatty acid binding protein (FABL), three forms of α-enolase (ENOA), nucleoside diphosphate kinase A (NDKA), cofilin-1 (COF1), translationally controlled tumour protein (TCTP), mitochondrial 60-kDa heat shock protein (CH60), probable protein disulfide isomerase (ER60), creatine kinase B (KCRB), and glutathione S-transferase α (GTA1). Thus, proteomics revealed that the differentiation-related change in phenotype of Caco-2 involves changes in a variety of distinct biochemical pathways. Some of these proteins have not been shown before to be associated with Caco-2 differentiation (ER60; COF1; CH60; NDKA; TCTP and ENOA). Therefore, processes related to protein folding and disulfide bridge formation, cytoskeleton formation and maintenance, nucleotide metabolism, glycolysis as well as tumorigenesis-associated proteins may be involved in Caco-2 differentiation. Changes in the expression of CH60, TCTP, GTA1, NDKA, and FABL have also been reported to be associated with in vivo colon carcinogenesis. These findings illustrate that a combination of proteomics and cell culture is a useful approach to find markers for Caco-2 differentiation, which could contribute to the comprehension of the process of colon carcinogenesis. © 2003 Elsevier B.V. All rights reserved.
- Published
- 2003
42. Proteome analysis reveals novel proteins associated with proliferation and differentiation of the colorectal cancer cell line Caco-2
- Subjects
cell division ,intestine cell ,fatty acid binding protein ,Proteome ,principal component analysis ,mitochondrial protein ,heat shock protein ,cell maturation ,nucleotide metabolism ,colon carcinogenesis ,Western blotting ,cell strain CACO 2 ,protein folding ,Two-dimensional gel electrophoresis ,glutathione transferase ,cell growth ,pH ,Blotting ,nucleoside diphosphate kinase ,article ,cytoskeleton ,Cell Differentiation ,nucleotide ,glycolysis ,matrix assisted laser desorption ionization time of flight mass spectrometry ,protein function ,enolase ,microvillus ,priority journal ,Differentiation ,liver protein ,alkaline phosphatase ,carcinogenesis ,Western ,signal transduction ,phenotype ,Proteome analysis ,two dimensional gel electrophoresis ,colorectal cancer ,cofilin ,proteomics ,tumor protein ,brush border ,Humans ,controlled study ,human ,protein expression ,Analytical research ,cell culture ,Mass spectrometry ,creatine kinase ,human cell ,genetic transcription ,Caco-2 ,isomerase ,Health Nutrition ,cell proliferation ,protein analysis ,physiology ,cytology ,Caco-2 Cells ,metabolism ,disulfide - Abstract
Here, we describe a proteomics approach to study protein expression changes in differentiating Caco-2 cells. Caco-2 is a colorectal carcinoma cell line, which upon differentiation loses its tumorigenic phenotype and displays characteristics of mature enterocytes, including brush borders with microvilli. Cells were grown in culture flasks and harvested at different stages of differentiation (days post-confluence: -3, 0, 3, 7, 10, 14, and 18). Two-dimensional gel electrophoresis was used to analyse proteome changes. Approximately 1400 protein spots were detected within the Caco-2 proteome, within the pH 4-7 range. Two-dimensional gel electrophoresis allowed for the detection of 18 proteins from which the levels of expression were found to be associated with differentiation. Of these proteins, 11 were identified by means of MALDI-TOF or NANO-ESI-MS/MS mass spectrometry and include liver fatty acid binding protein (FABL), three forms of α-enolase (ENOA), nucleoside diphosphate kinase A (NDKA), cofilin-1 (COF1), translationally controlled tumour protein (TCTP), mitochondrial 60-kDa heat shock protein (CH60), probable protein disulfide isomerase (ER60), creatine kinase B (KCRB), and glutathione S-transferase α (GTA1). Thus, proteomics revealed that the differentiation-related change in phenotype of Caco-2 involves changes in a variety of distinct biochemical pathways. Some of these proteins have not been shown before to be associated with Caco-2 differentiation (ER60; COF1; CH60; NDKA; TCTP and ENOA). Therefore, processes related to protein folding and disulfide bridge formation, cytoskeleton formation and maintenance, nucleotide metabolism, glycolysis as well as tumorigenesis-associated proteins may be involved in Caco-2 differentiation. Changes in the expression of CH60, TCTP, GTA1, NDKA, and FABL have also been reported to be associated with in vivo colon carcinogenesis. These findings illustrate that a combination of proteomics and cell culture is a useful approach to find markers for Caco-2 differentiation, which could contribute to the comprehension of the process of colon carcinogenesis. © 2003 Elsevier B.V. All rights reserved.
- Published
- 2003
43. Secretory meningiomas: Report of clinical, immunohistochemical findings in 12 cases and review of literature
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Çolakoglu, Nagihan, Demirtaş, E., Oktar, N., Yüntem, N., Islekel, S., and Özdamar, N.
- Subjects
Male ,milk fat globulin 2 ,meningioma ,progesterone receptor ,computer assisted tomography ,Immunoenzyme Techniques ,middle aged ,Meningeal Neoplasms ,neurosurgery ,cellular distribution ,comparative study ,epithelial membrane antigen ,clinical article ,adult ,article ,staining ,Immunohistochemistry ,enzyme immunoassay ,unclassified drug ,Neoplasm Proteins ,aged ,female ,classification ,Tumor Markers, Biological ,histopathology ,estrogen receptor ,CA 125 antigen ,disease classification ,review ,chemistry ,globulin ,tumor protein ,ubiquitin ,cell inclusion ,otorhinolaryngologic diseases ,follow up ,Humans ,controlled study ,human ,neoplasms ,Secretory meningioma ,carcinoembryonic antigen ,HMFG-2 ,alpha 1 antitrypsin ,nervous system diseases ,clinical feature ,cancer recurrence ,tumor marker ,Ki 67 antigen ,pathology ,Tomography, X-Ray Computed ,cytokeratin - Abstract
Secretory meningiomas are a rare meningioma subtype. Among meningiomas, the frequency of secretory meningiomas is 1.6%. Unlike other meningioma types, most of the patients were female (ratio 3:1). No recurrence was reported during the 24-180 months follow-up period of our secretory meningiomas in which, a low level of 0.3% Ki-67 proliferative index was reported. In this meningioma subtype, the percentage of cases with positive progesterone receptor is 33%. With carcinoembryonic antigen, cytokeratin and epithelial membrane antigen, in all the cases positivity was observed in both, the inclusions and the cells surrounding them. With human milk fat globulin 2, a high ratio (92%) of positivity was observed. Majority of the cases were negative with CA125, only three of the cases had suspicious positivity. Distribution of inclusions was irregular and their positive reactions showed varying staining features. Positivity with alpha-1-antitripsin was seen not only in the inclusions but also in some meningothelial cells as well. Ubiquitin was positive in inclusions of the 83% of cases. Staining features of the inclusions pointed out the possibility of them being in a varying age and/or content. Secretory meningiomas are a different type compared to other meningiomas, not only with their histological features but also with their clinical features as well.
- Published
- 2003
44. Human p8 Is a HMG-I/Y-like Protein with DNA Binding Activity Enhanced by Phosphorylation
- Author
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Encinar, J.A., Mallo, G.V., Mizyrycki, C., Giono, L., González-Ros, J.M., Rico, M., Cánepa, E., Moreno, S., Neira, J.L., and Iovanna, J.L.
- Subjects
sequence analysis ,high mobility group protein ,protein binding ,Biochemistry ,Protein Structure, Secondary ,biophysics ,protein folding ,binding affinity ,Spectroscopy, Fourier Transform Infrared ,high mobility group B1 protein ,Basic Helix-Loop-Helix Transcription Factors ,genetics ,protein tertiary structure ,HMGA1a Protein ,Phosphorylation ,infrared spectroscopy ,Growth Substances ,transcription factor ,comparative study ,Conserved Sequence ,nucleoprotein ,Circular Dichroism ,article ,High Mobility Group Proteins ,Fourier transform infrared spectroscopy ,P8 protein, human ,monomer ,structure analysis ,unclassified drug ,Neoplasm Proteins ,DNA-Binding Proteins ,priority journal ,Electrophoresis ,acute pancreatitis ,Molecular Sequence Data ,protein DNA binding ,gel mobility shift assay ,tumor protein ,protein conformation ,Humans ,human ,Amino Acid Sequence ,Nuclear Magnetic Resonance, Biomolecular ,Nuclear magnetic resonance spectroscopy ,cyclic AMP dependent protein kinase ,Sequence Homology, Amino Acid ,protein hp8 ,Proteins ,nucleotide sequence ,DNA ,sequence homology ,Cyclic AMP-Dependent Protein Kinases ,DNA binding protein ,protein phosphorylation ,Protein Structure, Tertiary ,nuclear magnetic resonance ,growth promotor ,molecular genetics ,basic helix loop helix transcription factor ,protein secondary structure ,Gel shift analysis ,high mobility group A1a protein ,metabolism ,Transcription Factors - Abstract
We have studied the biochemical features, the conformational preferences in solution, and the DNA binding properties of human p8 (hp8), a nucleoprotein whose expression is affected during acute pancreatitis. Biochemical studies show that hp8 has properties of the high mobility group proteins, HMG-I/Y. Structural studies have been carried out by using circular dichroism (near- and far-ultraviolet), Fourier transform infrared, and NMR spectroscopies. All the biophysical probes indicate that hp8 is monomeric (up to 1 mM concentration) and partially unfolded in solution. The protein seems to bind DNA weakly, as shown by electrophoretic gel shift studies. On the other hand, hp8 is a substrate for protein kinase A (PKA). The phosphorylated hp8 (PKAhp8) has a higher content of secondary structure than the nonphosphorylated protein, as concluded by Fourier transform infrared studies. PKAhp8 binds DNA strongly, as shown by the changes in circular dichroism spectra, and gel shift analysis. Thus, although there is not a high sequence homology with HMG-I/Y proteins, hp8 can be considered as a HMG-I/Y-like protein. Fil:Mallo, G.V. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Mizyrycki, C. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Giono, L. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Cánepa, E. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Fil:Moreno, S. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina.
- Published
- 2001
45. Germline hMSH2 and hMLH1 gene mutations in incomplete HNPCC families
- Author
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Wang, Q., Desseigne, F., Lasset, C., Saurin, J. -C, Navarro, C., Yagci, T., Keser, I., Bagci, H., Luleci, G., Gelen, T., Chayvialle, J. -A, Alain PUISIEUX, and Ozturk, M.
- Subjects
Tumor protein ,congenital, hereditary, and neonatal diseases and abnormalities ,MSH2 protein, human ,MLH1 protein, human ,Carrier protein ,Nuclear protein ,nutritional and metabolic diseases ,Oncoprotein ,DNA ,neoplasms ,digestive system diseases ,DNA binding protein ,Protein MSH2 - Abstract
Hereditary non-polyposis colon cancer (HNPCC) is a common hereditary disease characterized by a predisposition to an early onset of colorectal cancer. The majority of the HNPCC families carry germline mutations of either hMSH2 or hMLH1 genes, whereas germline mutations of hPMS1 and hPMS2 genes have rarely been observed. Almost all of the germline mutations reported so far concern typical HNPCC families. However, there are families that display aggregations of colon cancer even though they do not fulfil all HNPCC criteria (incomplete HNPCC families) as well as sporadic cases of early onset colon cancers that could be related to germline mutations of these genes. Therefore, we screened germline mutations of hMSH2 and hMLH1 genes in 3 groups of patients from France and Turkey: typical HNPCC (n = 3), incomplete HNPCC (n = 9) and young patients without apparent familial history (n = 7). By in vitro synthesis of protein assay, heteroduplex analysis and direct genomic sequencing, we identified 1 family with hMSH2 mutation and 5 families with hMLH1 mutations. Two of the 3 HNPCC families (66%) displayed hMLH1 germline mutations. Interestingly, 4 of 9 families with incomplete HNPCC (44%) also displayed mutations of hMSH2 or hMLH1 genes. In contrast, no germline mutation of these genes was found in 7 young patients. Our results show that germline mutations of hMSH2 and hMLH1 genes contribute to a significant fraction of familial predisposition to colon cancer cases that do not fulfil all diagnostic criteria of HNPCC. © 1997 Wiley-Liss, Inc.
- Published
- 1997
46. Dehydroleucodine Induces a TP73-dependent Transcriptional Regulation of Multiple Cell Death Target Genes in Human Glioblastoma Cells.
- Author
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Ratovitski EA
- Subjects
- Brain Neoplasms genetics, Cell Line, Tumor, Glioblastoma genetics, Humans, Apoptosis genetics, Brain Neoplasms pathology, Gene Expression Regulation, Neoplastic drug effects, Glioblastoma pathology, Lactones pharmacology, Sesquiterpenes pharmacology, Transcription, Genetic drug effects, Tumor Protein p73 physiology
- Abstract
Background: Dehydroleucodine, a natural sesquiterpene lactone from Artemisia douglassiana Besser (Argentine) and Gynoxys verrucosa (Ecuador)., Objective: To define the molecular mechanisms underlying the effect of dehydroleucodine on the human glioblastoma cells., Method: Various techniques (cDNA expression array, real-time quantitative PCR, chromatin immunprecipitation, luciferase reporter assay, use of phosphospecific antibodies, immunoprecipitation, immunoblotting, apoptosis and autophagy assays) were employed to define and validate multiple molecular gene targets affected in human glioblastoma cells upon dehydroleucodine exposure., Results: Dehydroleucodine exposure upregulated the total and phosphorylated (p-Y99) levels of TP73 in U87- MG glioblastoma cells. We found that TP73 silencing led to a partial rescue of U87-MG cells from the cell death induced by dehydroleucodine. Upon the dehydroleucodine exposure numerous gene targets were upregulated and downregulated through a TP73-dependent transcriptional mechanism. Some of these gene targets are known to be involved in cell cycle arrest, apoptosis, autophagy and necroptosis. Dehydroleucodine induced the TP73 binding to the specific genes promoters (CDKN1A, BAX, TP53AIP1, CYLD, RIPK1, and APG5L). Moreover, the exposure of U87-MG cells to dehydroleucodine upregulated the protein levels of CDKN1A, BAX, TP53AIP1, CYLD, RIPK1, APG5L, and downregulated the CASP8 level. The formation of RIPK1 protein complexes and phosphorylation of MLKL were induced by dehydroleucodine supporting the notion of multiple cell death mechanisms implicated in the tumor cell response to dehydroleucodine., Conclusion: This multifaceted study led to a conclusion that dehydroleucodine induces the phosphorylation of tumor protein TP73 and in turn activates numerous TP73-target genes regulating apoptosis, autophagy and necroptosis in human glioblastoma cells.., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.)
- Published
- 2017
- Full Text
- View/download PDF
47. Low-grade polymorphic adenocarcinoma of papillary type. Morphological and immunohistochemical study
- Author
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Carvalho, Y. R., de Oliveira Nogueira, T., de Souza, S. O., de Araujo, V. C., and Universidade Estadual Paulista (Unesp)
- Subjects
Adult ,Male ,adenocarcinoma ,S100 Proteins ,minor saliva gland ,salivary gland tumor ,Case Report ,English Abstract ,Salivary Gland Neoplasms ,chemistry ,Salivary Glands, Minor ,Immunohistochemistry ,Neoplasm Proteins ,Adenocarcinoma, Papillary ,female ,vimentin ,tumor protein ,pathology ,human ,protein S 100 ,keratin - Abstract
Submitted by Vitor Silverio Rodrigues (vitorsrodrigues@reitoria.unesp.br) on 2014-05-27T10:59:38Z No. of bitstreams: 0Bitstream added on 2014-05-27T14:28:07Z : No. of bitstreams: 1 2-s2.0-0025654220.pdf: 458884 bytes, checksum: faa27c861fa1e802602345f6250d5148 (MD5) Made available in DSpace on 2014-05-27T10:59:38Z (GMT). No. of bitstreams: 0 Previous issue date: 1990-12-01 Two cases of polymorphous low-grade adenocarcinoma of the papillary type, from minor salivary glands were studied by light microscopy and immunohistochemistry. One case exhibited a predominance of the papillary pattern, whereas the other presented the following patterns of histological appearance: papillary, solid, pseudocystic and tubular. Utilizing the peroxidase-antiperoxidase (PAP) method, the intermediate filament vimentin, keratin and S100 protein were observed in tumor cells. The immunohistochemical analysis revealed two types of neoplastic cells: myoepithelial and luminal.
- Published
- 1990
48. Functional studies of the <italic>Plasmodium falciparum</italic> translationally controlled tumor protein.
- Author
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Bhisutthibhan, Jamaree
- Subjects
- Controlled, Functional, Plasmodium Falciparum, Studies, Translationally, Tumor Protein
- Abstract
The Translationally Controlled Tumor Proteins (TCTPs) are a family of proteins whose functions are still largely unknown. The Plasmodium falciparum TCTP was first identified in studies of the mechanism of action of the antimalarial artemisinin. These studies demonstrated that TCTP reacts with artemisinin both in situ and in vitro in the presence of hemin. In vitro, the binding of drug to protein increases with increasing drug concentration, plateauing at approximately one drug per TCTP molecule. This binding also increases with increases in hemin concentration. By Scatchard analysis, TCTP was found to have 2 hemin binding sites with dissociation constant of 18 muM. Subcellular localization by immunofluorescence and immunoelectron microscopy suggests that the malarial TCTP is present in both the cytoplasm and food vaculoar membrane. Like other TCTPs, P. falciparum TCTP appears to binds calcium. Several studies have shown that the severity of cerebral malaria may be a result of an overactive host immune response such as an elevation in the production of histamine. This led us to investigate whether TCTP found in patient plasma, was associated with disease severity and might elicit histamine secretion. Malaria infected patients from Malawi had TCTP in plasma with mean levels of 2.33 +/- 0.995 mug per ml. No statistically significant difference was found in plasma TCTP levels from patients with different disease severities or levels of parasitemia, but the sample size was small. Results from in vitro parasite cultures suggest that the TCTP found in patient plasma was the result of infected red blood cell lysis which occurs during schizogony. Further studies on physiological role of TCTP may help to understand the mechanism of action of artemisinin and the pathogenesis of malaria.
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- 2000
49. The proapoptotic factor HLDF in the normal, hyperplastic and neoplastic endometrium
- Author
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Kovyazin V.A., Shchelokova E.E., Kostanyan I.A., Dranitsyna S.M., Frolova I.I., Babichenko I.I., Kovyazin V.A., Shchelokova E.E., Kostanyan I.A., Dranitsyna S.M., Frolova I.I., and Babichenko I.I.
- Abstract
Antibodies to the factor HLDF are shown to be specific markers of apoptosis and permit the estimation of the rate of programmed cell death in the course of a normal menstrual cycle and in pathologic endometrial processes. HLDF expression in the epitheliocytic cytoplasm makes it possible to evaluate apoptosis at early stages, before the emergence of the first morphological signs and after apoptotic body formation. The study shows increased apoptotic processes at the end of a normal menstrual cycle and during neoplastic cell transformation. Antibodies to the HLDF factor may be used as a new immunohistochemical marker for the differential diagnosis of benign and malignant endometrial processes.
50. Generation of an immortalized human endothelial cell line as a model of neovascular proliferating endothelial cells to assess chemosensitivity to anticancer drugs
- Author
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Alessia Muzi, Olindo Forini, Grazia Graziani, Lucio Tentori, Lauretta Levati, Matteo Vergati, Pedro Miguel Lacal, Federica Ruffini, and Patrizia Vernole
- Subjects
CD31 ,Male ,virus T antigen ,von Willebrand factor ,Mice ,Cell Movement ,genetics ,endothelium cell ,comparative study ,Inbred BALB C ,CD164L1 protein ,drug effect ,Settore BIO/14 ,Flow Cytometry ,Alkylating ,Neoplasm Proteins ,Endothelial stem cell ,Platelet Endothelial Cell Adhesion Molecule-1 ,Cell Transformation, Neoplastic ,Oncology ,FLT1 protein ,Western ,Endothelium ,Blotting, Western ,Antineoplastic Agents ,Transfection ,reverse transcription polymerase chain reaction ,HT29 Cells ,tumor protein ,Antigens, CD ,Humans ,human ,cell strain HT29 ,xenograft ,Antineoplastic Agents, Alkylating ,mouse ,Vascular Endothelial Growth Factor Receptor-1 ,Vascular Endothelial Growth Factor Receptor-2 ,DNA binding protein ,chemistry ,Transformed ,Immunology ,drug derivative ,genetic transfection ,Cancer Research ,Angiogenesis ,Antigens, Polyomavirus Transforming ,Nude ,Gene Expression ,cell transformation ,temozolomide ,Western blotting ,chemistry.chemical_compound ,Bagg albino mouse ,cell motion ,Neoplasms ,membrane protein ,vasculotropin receptor 2 ,animal ,vasculotropin receptor 1 ,Telomerase ,Tumor Stem Cell Assay ,Cell Line, Transformed ,Mice, Inbred BALB C ,telomere ,Heterologous ,Blotting ,Reverse Transcriptase Polymerase Chain Reaction ,article ,cell line ,Vascular endothelial growth factor ,Dacarbazine ,DNA-Binding Proteins ,medicine.anatomical_structure ,alkylating agent ,CD164L1 protein, human ,CD31 antigen ,dacarbazine ,FLT1 protein, human ,telomerase ,cell proliferation ,cytology ,drug screening ,experimental neoplasm ,flow cytometry ,gene expression ,male ,metabolism ,nude mouse ,pathology ,plasmid ,Animals ,Antigens, CD31 ,Cell Line ,Cell Proliferation ,Endothelial Cells ,Membrane Proteins ,Mice, Nude ,Neoplasms, Experimental ,Plasmids ,Telomere ,Transplantation, Heterologous ,von Willebrand Factor ,Biology ,Experimental ,Antigens, Neoplasm ,medicine ,Antigens ,Neoplastic ,Transplantation ,Kinase insert domain receptor ,Cell culture ,Cancer research ,Polyomavirus Transforming - Abstract
Assessment of chemosensitivity of neovessel endo-thelium associated to tumor mass is hindered by the limited availability of experimental models of actively proliferating endothelial cells. In fact, primary endothelial cells possess a limited lifespan and replicative senescence represents a major limit to their long-term culture. Moreover, non-dividing senescent cells undergo a gradual loss of phenotypic markers and become unable to respond to mitogenic stimuli. We report the generation of an immortalized human endothelial cell line by transfection of human umbilical vein endothelial cells (HUVEC) with both SV40 large/small T antigens and the catalytic subunit of human telomerase. This cell line (HUV-ST) possesses stabilized telomere length and increased proliferation rate with respect to parental cells or to cells transfected with SV40 T antigens only (HUV-S). Nevertheless, even at PD > 100 it is not tumorigenic and displays all major endothelial phenotypic markers, such as von Willebrand factor, CD31, vascular endothelial growth factor (VEGF) receptors (VEGFR1/Flt-1, VEGR2/KDR) and CD105/endoglin. HUV-ST cells are capable of organizing into tubule-like networks with branching morphology in response to appropriate stimuli and migrate upon exposure to VEGF. Interestingly, HUV-ST cells over-express the tumor endothelial marker-1/endosialin which is regarded as the most differentially expressed molecule in tumor-derived endothelium versus normal-derived endothelium. Analysis of chemosensitivity to the wide spectrum methylating agent temozolomide (TMZ), an anticancer drug more effective against actively dividing cells than against resting or slowing proliferating cells, indicated that HUV-ST cells are more susceptible to the drug with respect to HUVEC or HUV-S cells. Abrogation of poly(ADP-ribose) polymerase activity significantly enhances growth inhibition induced by TMZ. In conclusion, the immortalized human endothelial line HUV-ST represents a suitable model for studying the efficacy of anti-neovascular therapy, mimicking proliferating neovascular endothelial cells associated to the tumor mass.
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