1,587 results on '"timeless"'
Search Results
2. Timeless-Stimulated miR-5188-FOXO1/β-Catenin-c-Jun Feedback Loop Promotes Stemness via Ubiquitination of β-Catenin in Breast Cancer
- Author
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Zou, Yujiao, Lin, Xian, Bu, Junguo, Lin, Zelong, Chen, Yanjuan, Qiu, Yunhui, Mo, Haiyue, Tang, Yao, Fang, Weiyi, and Wu, Ziqing
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- 2020
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3. Mitochondrial inhibitors reveal roles of specific respiratory chain complexes in CRY-dependent degradation of TIM
- Author
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Xiangzhong Zheng, Dechun Chen, Brian Zoltowski, and Amita Sehgal
- Subjects
Circadian clock ,Cryptochrome ,Timeless ,Mitochondria ,Respiratory chain ,Medicine ,Science - Abstract
Abstract Drosophila Cryptochrome (CRY) is an essential photoreceptor that mediates the resetting of the circadian clock by light. in vitro studies demonstrated a critical role of redox cycling of the FAD cofactor for CRY activation by light. However, it is unknown if CRY responds to cellular redox environment to modulate the circadian clock. We report here that the mitochondrial respiratory chain impinges on CRY activity. Inhibition of complex III and V blocks CRY-mediated degradation of TIMELESS (TIM) in response to light, and also blocks light-induced CRY degradation. On the other hand, inhibition of complex I facilitates TIM degradation even in the dark. Mutations of critical residues of the CRY C-terminus promote TIM degradation in the dark, even in the presence of complex III and V inhibitors. We propose that complex III and V activities are important for activation of CRY in response to light. Interestingly, we found that transcriptional repressor functions of Drosophila and mammalian CRY proteins are not affected by mitochondrial inhibitors. Together these data suggest that the two functions of CRY have different sensitivity to disruptions of the mitochondrial respiratory chain: one is sensitive to mitochondrial activities that enable resetting, the other is insensitive so as to sustain the molecular oscillator.
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- 2024
- Full Text
- View/download PDF
4. EXPLORING THE IMPACT OF ARTIFICIAL INTELLIGENCE ON FINANCIAL ACCOUNTING: OPPORTUNITIES, CHALLENGES, AND FUTURE DIRECTIONS.
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Gatea, Alikhalaf
- Subjects
ARTIFICIAL intelligence ,STOCKS (Finance) ,ACCOUNTING ,FINANCIAL management ,INFORMATION resources management - Abstract
The main aim is to investigate the impact of Artificial Intelligence (AI) on various aspects of disclosing financial information. The case study used a mixed methods approach, and a sample of stakeholders dealing in the Iraq Stock Exchange was taken during 2023 in Iraq. Data collection mainly included a survey conducted on 168 beneficiaries who trade stocks in the stock market, after which 22 clients were selected for personal interviews based on their voluntary willingness to participate in individual interviews. The results revealed beneficiaries prefer to use Artificial Intelligence to get new ideas for tasks or to help them with "plans" for their projects. The results also revealed that artificial intelligence applications raise concerns about ethics and reliability in their use to disclose financial information and their exploitation by management to obtain financial funding against beneficiaries' will. Finally, the results revealed that most current educational curricula differ from technological developments. Based on the participant's responses about receiving training in artificial intelligence, their concerns were related to the need for appropriate education to deal with artificial intelligence tools. [ABSTRACT FROM AUTHOR]
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- 2024
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5. EXPLORING THE IMPACT OF ARTIFICIAL INTELLIGENCE ON FINANCIAL ACCOUNTING: OPPORTUNITIES, CHALLENGES, AND FUTURE DIRECTIONS
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Ali Khalaf Gatea
- Subjects
Artificial Intelligence (AI) ,financial accounting ,understandability ,verifiability ,comparability ,timeless ,Economics as a science ,HB71-74 ,Business ,HF5001-6182 - Abstract
The main aim is to investigate the impact of Artificial Intelligence (AI) on various aspects of disclosing financial information. The case study used a mixed methods approach, and a sample of stakeholders dealing in the Iraq Stock Exchange was taken during 2023 in Iraq. Data collection mainly included a survey conducted on 168 beneficiaries who trade stocks in the stock market, after which 22 clients were selected for personal interviews based on their voluntary willingness to participate in individual interviews. The results revealed beneficiaries prefer to use Artificial Intelligence to get new ideas for tasks or to help them with "plans" for their projects. The results also revealed that artificial intelligence applications raise concerns about ethics and reliability in their use to disclose financial information and their exploitation by management to obtain financial funding against beneficiaries' will. Finally, the results revealed that most current educational curricula differ from technological developments. Based on the participant's responses about receiving training in artificial intelligence, their concerns were related to the need for appropriate education to deal with artificial intelligence tools.
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- 2024
- Full Text
- View/download PDF
6. Functional Analyses of Four Cryptochromes From Aquatic Organisms After Heterologous Expression in Drosophila melanogaster Circadian Clock Cells.
- Author
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Chen, Chenghao, Tamai, T. Katherine, Xu, Min, Petrone, Libero, Oliveri, Paola, Whitmore, David, and Stanewsky, Ralf
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STRONGYLOCENTROTUS purpuratus , *FRUIT flies , *DROSOPHILA melanogaster , *AQUATIC organisms , *CRYPTOCHROMES , *ZEBRA danio - Abstract
Cryptochromes (Crys) represent a multi-facetted class of proteins closely associated with circadian clocks. They have been shown to function as photoreceptors but also to fulfill light-independent roles as transcriptional repressors within the negative feedback loop of the circadian clock. In addition, there is evidence for Crys being involved in light-dependent magneto-sensing, and regulation of neuronal activity in insects, adding to the functional diversity of this cryptic protein class. In mammals, Crys are essential components of the circadian clock, but their role in other vertebrates is less clear. In invertebrates, Crys can function as circadian photoreceptors, or as components of the circadian clock, while in some species, both light-receptive and clock factor roles coexist. In the current study, we investigate the function of Cry proteins in zebrafish (Danio rerio), a freshwater teleost expressing 6 cry genes. Zebrafish peripheral circadian clocks are intrinsically light-sensitive, suggesting the involvement of Cry in light-resetting. Echinoderms (Strongylocentrotus purpuratus) represent the only class of deuterostomes that possess an orthologue (SpuCry) of the light-sensitive Drosophila melanogaster Cry, which is an important component of the light-resetting pathway, but also works as transcriptional repressor in peripheral clocks of fruit flies. We therefore investigated the potential of different zebrafish cry genes and SpuCry to replace the light-resetting and repressor functions of Drosophila Cry by expressing them in fruit flies lacking endogenous cry function. Using various behavioral and molecular approaches, we show that most Cry proteins analyzed are able to fulfill circadian repressor functions in flies, except for one of the zebrafish Crys, encoded by cry4a. Cry4a also shows a tendency to support light-dependent Cry functions, indicating that it might act in the light-input pathway of zebrafish. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
7. The circadian and photoperiodic clock of the pea aphid.
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Colizzi, Francesca Sara, Martínez-Torres, David, and Helfrich-Förster, Charlotte
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PEA aphid , *LIFE cycles (Biology) , *NEUROENDOCRINE system , *SPRING ,APHID control - Abstract
The pea aphid, Acyrthosiphon pisum, is a paradigmatic photoperiodic species that exhibits a remarkable annual life cycle, which is tightly coupled to the seasonal changes in day length. During spring and summer, characterised by longer days, aphid populations consist exclusively of viviparous females that reproduce parthenogenetically. When autumn comes and the days shorten, aphids switch their reproductive mode and generate males and oviparous sexual females, which mate and produce cold-resistant eggs that overwinter and survive the unfavourable season. While the photoperiodic responses have been well described, the nature of the timing mechanisms which underlie day length discrimination are still not completely understood. Experiments from the 1960's suggested that aphids rely on an 'hourglass' clock measuring the elapsed time during the dark night by accumulating a biochemical factor, which reaches a critical threshold at a certain night length and triggers the switch in reproduction mode. However, the photoperiodic responses of aphids can also be attributed to a strongly dampened circadian clock. Recent studies have uncovered the molecular components and the location of the circadian clock in the brain of the pea aphid and revealed that it is well connected to the neurohormonal system controlling aphid reproduction. We provide an overview of the putative mechanisms of photoperiodic control in aphids, from the photoreceptors involved in this process to the circadian clock and the neuroendocrine system. [ABSTRACT FROM AUTHOR]
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- 2024
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8. MiR-34a regulates renal circadian rhythms during cisplatin-induced nephrotoxicity
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Abdalla, Mohnad, El-Arabey, Amr Ahmed, and Gai, Zhongtao
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- 2025
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9. TIMELESS promotes reprogramming of glucose metabolism in oral squamous cell carcinoma
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Chen, Yafan, Han, Zhengyang, Zhang, Le, Gao, Caihong, Wei, Jingyi, Yang, Xuyuan, Han, Yabing, Li, Yunbo, Zhang, Chunmei, Wei, Yixin, Dong, Jiaqi, Xun, Wenxing, Sun, Weifu, Zhang, Taotao, Zhang, Hui, Chen, Jingtao, and Yuan, Peng
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- 2024
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10. Temporal Domains in English and Romanian
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Daniela Luminița Pirlog
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temporal domains ,time axes ,present ,past ,future ,timeless ,real time situations ,Special aspects of education ,LC8-6691 - Abstract
This paper will focus on new elements which are common in the interpretive analysis of temporality. Temporality is an abstraction which joins together all of the elements contributing to the conveying of details about the chronology, the distance and the duration of events in a certain context. This paper is mainly divided into a first half discussing the temporal divisions on the time axis and a second which deals with situations which happen in the present, in the past or in the future as they are placed on the temporal axis and illustrate of the temporal domain to which they belong.
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- 2024
11. An integrative evaluation of circadian gene TIMELESS as a pan-cancer immunological and predictive biomarker
- Author
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Yaocheng Yang, Xianzhe Tang, Zhengjun Lin, Tao Zheng, Sheng Zhang, Tang Liu, and Xiaolun Yang
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TIMELESS ,Pan-cancer ,Circadian rhythm ,Prognosis ,Immunological biomarker ,Medicine - Abstract
Abstract Background The gene TIMELESS, which is involved in the circadian clock and the cell cycle, has recently been linked to various human cancers. Nevertheless, the association between TIMELESS expression and the prognosis of individuals afflicted with pan-cancer remains largely unknown. Objectives The present study aims to exhaustively scrutinize the expression patterns, functional attributes, prognostic implications, and immunological contributions of TIMELESS across diverse types of human cancer. Methods The expression of TIMELESS in normal and malignant tissues was examined, as well as their clinicopathologic and survival data. The characteristics of genetic alteration and molecular subtypes of cancers were also investigated. In addition, the relationship of TIMELESS with immune infiltration, tumor mutation burden (TMB), microsatellite instability (MSI), and drug sensitivity was illustrated. Immunohistochemistry (IHC) was used to validate the expression of TIMELESS in clinical patients with several types of cancer. Results In contrast to the matching normal controls, most tumor types were found to often overexpress TIMELESS. Abnormal expression of TIMELESS was significantly related to more advanced tumor stage and poorer prognosis of breast cancer, as well as infiltrating immune cells such as cancer-associated fibroblast infiltration in various tumors. Multiple cancer types exhibited abnormal expression of TIMELESS, which was also highly correlated with MSI and TMB. More crucially, TIMELESS showed promise in predicting the effectiveness of immunotherapy and medication sensitivity in cancer therapy. Moreover, cell cycle, DNA replication, circadian rhythm, and mismatch repair were involved in the functional mechanisms of TIMELESS on carcinogenesis. Furthermore, immunohistochemical results manifested that the TIMELESS expression was abnormal in some cancers. Conclusions This study provides new insights into the link between the circadian gene TIMELESS and the development of various malignant tumors. The findings suggest that TIMELESS could be a prospective prognostic and immunological biomarker for pan-cancer.
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- 2023
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12. Cardiac Timeless Trans-Organically Regulated by miR-276 in Adipose Tissue Modulates Cardiac Function.
- Author
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Tang, Chao, Li, Qiufang, Wang, Xiaoya, Yu, Zhengwen, Ping, Xu, Qin, yi, Liu, Yang, and Zheng, Lan
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HEART , *ADIPOSE tissues , *HEART beat , *CLOCK genes , *MOLECULAR clock , *GENE expression , *EXERCISE therapy , *BIOLOGICAL rhythms - Abstract
The interconnection between cardiac function and circadian rhythms is of great importance. While the role of the biological clock gene Timeless (Tim) in circadian rhythm has been extensively studied, its impact on cardiac function remains largely been unexplored. Previous research has provided experimental evidence for the regulation of the heart by adipose tissue and the targeting of miR-276a/b on Timeless. However, the extent to which adipose tissue regulates cardiac Timeless genes trans-organically through miR-276a/b, and subsequently affects cardiac function, remains uncertain. Therefore, the objective of this study was to investigate the potential trans-organ modulation of the Timeless gene in the heart by adipose tissue through miR-276a/b. We found that cardiac-specific Timeless knockdown and overexpression resulted in a significant increase in heart rate (HR) and a significant decrease in Heart period (HP), diastolic intervals (DI), systolic intervals (SI), diastolic diameter (DD), and systolic diameter (SD). miR-276b systemic knockdown resulted in a significant increase in DI, arrhythmia index (AI), and fractional shortening (FS) significantly increased and SI, DD and SD significantly decreased. Adipose tissue-specific miR-276a/b knockdown and miR-276a overexpression resulted in a significant increase in HR and a significant decrease in DI and SI, which were improved by exercise intervention. This study presents a novel finding that highlights the significance of the heart circadian clock gene Timeless in heart function. Additionally, it demonstrates that adipose tissue exerts trans-organ modulation on the expression of the heart Timeless gene via miR-276a/b. Graphical Abstract [ABSTRACT FROM AUTHOR]
- Published
- 2024
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13. EXPLORING THE ABSURDITY OF WAR: A LITERARY ANALYSIS OF CATCH-22.
- Author
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Neziri, Anita, Turku, Marsela, and Pavlíková, Martina
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WAR , *BLACK humor , *AUTHORSHIP , *NARRATION , *DEHUMANIZATION , *CHRONOLOGY , *LITERARY characters - Abstract
Aim. This study aims to conduct a comprehensive analysis of the absurdities inherent in combat events as depicted in Joseph Heller's novel, Catch-22. The study seeks to explore how Heller utilizes literary techniques such as sarcasm, black humor, and surrealism to portray the contradictions, irrationality, and overall absurd nature of war. Additionally, the study aims to unfold the deeper societal implications, including dehumanization and moral degradation, presented in the novel. Method. The research method employed in this study is primarily a qualitative literary analysis. The analysis involves a close examination of the text of Catch-22, focusing on the novel's characters, plot structure, narrative techniques, and the use of literary devices. It engages in critical interpretation and evaluation of how Heller employs sarcasm, black humor to convey the absurdities of war. Results. The study reveals that Joseph Heller employs a unique set of literary techniques, including non-sequential narrative, broken chronology, and cyclical motifs, to vividly capture the chaotic and absurd nature of combat events. The analysis uncovers recurring themes such as bureaucratic absurdities, loss of personal agency, dehumanization, and the existential toll of war. The study highlights the significance of the Catch-22 paradox as a central motif, illustrating the circular and illogical nature of bureaucratic processes during war. Conclusion. Joseph Heller's Catch-22 serves as a powerful critique of the absurdities prevalent in wartime. The Catch-22 paradox emerges as a symbolic representation of bureaucratic folly, encapsulating the struggle of individuals caught in the machinery of conflict. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
14. An integrative evaluation of circadian gene TIMELESS as a pan-cancer immunological and predictive biomarker.
- Author
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Yang, Yaocheng, Tang, Xianzhe, Lin, Zhengjun, Zheng, Tao, Zhang, Sheng, Liu, Tang, and Yang, Xiaolun
- Subjects
PROGRAMMED cell death 1 receptors ,BIOMARKERS ,DNA replication ,BREAST cancer prognosis ,PROGNOSIS ,GENES - Abstract
Background: The gene TIMELESS, which is involved in the circadian clock and the cell cycle, has recently been linked to various human cancers. Nevertheless, the association between TIMELESS expression and the prognosis of individuals afflicted with pan-cancer remains largely unknown. Objectives: The present study aims to exhaustively scrutinize the expression patterns, functional attributes, prognostic implications, and immunological contributions of TIMELESS across diverse types of human cancer. Methods: The expression of TIMELESS in normal and malignant tissues was examined, as well as their clinicopathologic and survival data. The characteristics of genetic alteration and molecular subtypes of cancers were also investigated. In addition, the relationship of TIMELESS with immune infiltration, tumor mutation burden (TMB), microsatellite instability (MSI), and drug sensitivity was illustrated. Immunohistochemistry (IHC) was used to validate the expression of TIMELESS in clinical patients with several types of cancer. Results: In contrast to the matching normal controls, most tumor types were found to often overexpress TIMELESS. Abnormal expression of TIMELESS was significantly related to more advanced tumor stage and poorer prognosis of breast cancer, as well as infiltrating immune cells such as cancer-associated fibroblast infiltration in various tumors. Multiple cancer types exhibited abnormal expression of TIMELESS, which was also highly correlated with MSI and TMB. More crucially, TIMELESS showed promise in predicting the effectiveness of immunotherapy and medication sensitivity in cancer therapy. Moreover, cell cycle, DNA replication, circadian rhythm, and mismatch repair were involved in the functional mechanisms of TIMELESS on carcinogenesis. Furthermore, immunohistochemical results manifested that the TIMELESS expression was abnormal in some cancers. Conclusions: This study provides new insights into the link between the circadian gene TIMELESS and the development of various malignant tumors. The findings suggest that TIMELESS could be a prospective prognostic and immunological biomarker for pan-cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
15. TIMELESS upregulates PD-L1 expression and exerts an immunosuppressive role in breast cancer
- Author
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Xinrui Dong, Huijuan Dai, Yanping Lin, Xiaonan Sheng, Ye Li, Yaohui Wang, Xueli Zhang, Shuheng Jiang, Wenjin Yin, and Jinsong Lu
- Subjects
TIMELESS ,PD-L1 ,CD8+ T lymphocytes ,Breast cancer ,Medicine - Abstract
Abstract Background Upregulation of the PD-L1 (CD274) immune checkpoint ligand on the tumor surface facilitates tumor immune escape and limits the application of immunotherapy in various cancers, including breast cancer. However, the mechanisms underlying high PD-L1 levels in cancers are still poorly understood. Methods Bioinformatics analyses and in vivo and in vitro experiments were carried out to assess the association between CD8+ T lymphocytes and TIMELESS (TIM) expression, and to discover the mechanisms of TIM, the transcription factor c-Myc, and PD-L1 in breast cancer cell lines. Results The circadian gene TIM enhanced PD-L1 transcription and facilitated the aggressiveness and progression of breast cancer through the intrinsic and extrinsic roles of PD-L1 overexpression. Bioinformatic analyses of our RNA sequencing data in TIM-knockdown breast cancer cells and public transcriptomic datasets showed that TIM might play an immunosuppressive role in breast cancer. We found that TIM expression was inversely associated with CD8+ T lymphocyte infiltration in human breast cancer samples and subcutaneous tumor tissues. In vivo and in vitro experiments demonstrated that TIM knockdown increased CD8+ T lymphocyte antitumor activity. Furthermore, our results showed that TIM interacts with c-Myc to enhance the transcriptional capability of PD-L1 and facilitates the aggressiveness and progression of breast cancer through the intrinsic and extrinsic roles of PD-L1 overexpression. Moreover, public database analysis suggested that high TIM levels were positively related to PD-L1 inhibitor therapeutic response. Conclusions Mechanistically, we first found that TIM could upregulate PD-L1 by interacting with c-Myc to enhance the transcriptional capability of c-Myc to PD-L1. Altogether, our findings not only provide a novel therapeutic strategy to treat breast cancer by targeting the oncogenic effect of TIM but also indicate that TIM is a promising biomarker for predicting the benefit of anti-PD-L1 immunotherapy.
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- 2023
- Full Text
- View/download PDF
16. Exosomal-miR-129-2-3p derived from Fusobacterium nucleatum-infected intestinal epithelial cells promotes experimental colitis through regulating TIMELESS-mediated cellular senescence pathway
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Shuchun Wei, Xiaohan Wu, Meilin Chen, Zixuan Xiang, Xiangyun Li, Jixiang Zhang, and Weiguo Dong
- Subjects
Fusobacterium nucleatum ,ulcerative colitis ,exosomes ,miR-129-2-3p ,TIMELESS ,cellular senescence ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
ABSTRACTFusobacterium nucleatum (Fn) infection is known to exacerbate ulcerative colitis (UC). However, the link between Fn-infected intestinal epithelial cell (IEC)-derived exosomes (Fn-Exo) and UC progression has not been investigated. Differentially expressed miRNAs in Fn-Exo and non-infected IECs-derived exosomes (Con-Exo) were identified by miRNA sequencing. Then, the biological role and mechanism of Fn-Exo in UC development were determined in vitro and in vivo. We found that exosomes delivered miR-129-2-3p from Fn-infected IECs into non-infected IECs, exacerbating epithelial barrier dysfunction and experimental colitis. Mechanically, Fn-Exo induces DNA damage via the miR-129-2-3p/TIMELESS axis and subsequently activates the ATM/ATR/p53 pathway, ultimately promoting cellular senescence and colonic inflammation. In conclusion, Exo-miR-129-2-3p/TIMELESS/ATM/ATR/p53 pathway aggravates cellular senescence, barrier damage, and experimental colitis. The current study revealed a previously unknown regulatory pathway in the progression of Fn-infectious UC. Furthermore, Exosomal-miR-129-2-3p in serum and TIMELESS may function as novel potential diagnostic biomarkers for UC and Fn-high-UC.
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- 2023
- Full Text
- View/download PDF
17. CK2 Inhibits TIMELESS Nuclear Export and Modulates CLOCK Transcriptional Activity to Regulate Circadian Rhythms
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Cai, Yao D, Xue, Yongbo, Truong, Cindy C, Del Carmen-Li, Jose, Ochoa, Christopher, Vanselow, Jens T, Murphy, Katherine A, Li, Ying H, Liu, Xianhui, Kunimoto, Ben L, Zheng, Haiyan, Zhao, Caifeng, Zhang, Yong, Schlosser, Andreas, and Chiu, Joanna C
- Subjects
Biochemistry and Cell Biology ,Biological Sciences ,Sleep Research ,Genetics ,Neurosciences ,1.1 Normal biological development and functioning ,Generic health relevance ,Active Transport ,Cell Nucleus ,Animals ,CLOCK Proteins ,Circadian Rhythm ,Drosophila Proteins ,Drosophila melanogaster ,Humans ,Sleep Disorders ,Circadian Rhythm ,CK2 ,CLOCK ,Drosophila ,FASPS ,PERIOD ,TIMELESS ,XPO1 ,circadian clock ,nuclear export ,phosphorylation ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Developmental Biology ,Biological sciences ,Biomedical and clinical sciences ,Psychology - Abstract
Circadian clocks orchestrate daily rhythms in organismal physiology and behavior to promote optimal performance and fitness. In Drosophila, key pacemaker proteins PERIOD (PER) and TIMELESS (TIM) are progressively phosphorylated to perform phase-specific functions. Whereas PER phosphorylation has been extensively studied, systematic analysis of site-specific TIM phosphorylation is lacking. Here, we identified phosphorylation sites of PER-bound TIM by mass spectrometry, given the importance of TIM as a modulator of PER function in the pacemaker. Among the 12 TIM phosphorylation sites we identified, at least two of them are critical for circadian timekeeping as mutants expressing non-phosphorylatable mutations exhibit altered behavioral rhythms. In particular, we observed that CK2-dependent phosphorylation of TIM(S1404) promotes nuclear accumulation of PER-TIM heterodimers by inhibiting the interaction of TIM and nuclear export component, Exportin 1 (XPO1). We propose that proper level of nuclear PER-TIM accumulation is necessary to facilitate kinase recruitment for the regulation of daily phosphorylation rhythm and phase-specific transcriptional activity of CLOCK (CLK). Our results highlight the contribution of phosphorylation-dependent nuclear export of PER-TIM heterodimers to the maintenance of circadian periodicity and identify a new mechanism by which the negative elements of the circadian clock (PER-TIM) regulate the positive elements (CLK-CYC). Finally, because the molecular phenotype of tim(S1404A) non-phosphorylatable mutant exhibits remarkable similarity to that of a mutation in human timeless that underlies familial advanced sleep phase syndrome (FASPS), our results revealed an unexpected parallel between the functions of Drosophila and human TIM and may provide new insights into the molecular mechanisms underlying human FASPS.
- Published
- 2021
18. TIMELESS upregulates PD-L1 expression and exerts an immunosuppressive role in breast cancer.
- Author
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Dong, Xinrui, Dai, Huijuan, Lin, Yanping, Sheng, Xiaonan, Li, Ye, Wang, Yaohui, Zhang, Xueli, Jiang, Shuheng, Yin, Wenjin, and Lu, Jinsong
- Subjects
IMMUNOSUPPRESSION ,PROGRAMMED death-ligand 1 ,BREAST cancer ,BREAST ,IMMUNE checkpoint proteins ,T cells ,PROGRAMMED cell death 1 receptors - Abstract
Background: Upregulation of the PD-L1 (CD274) immune checkpoint ligand on the tumor surface facilitates tumor immune escape and limits the application of immunotherapy in various cancers, including breast cancer. However, the mechanisms underlying high PD-L1 levels in cancers are still poorly understood. Methods: Bioinformatics analyses and in vivo and in vitro experiments were carried out to assess the association between CD8
+ T lymphocytes and TIMELESS (TIM) expression, and to discover the mechanisms of TIM, the transcription factor c-Myc, and PD-L1 in breast cancer cell lines. Results: The circadian gene TIM enhanced PD-L1 transcription and facilitated the aggressiveness and progression of breast cancer through the intrinsic and extrinsic roles of PD-L1 overexpression. Bioinformatic analyses of our RNA sequencing data in TIM-knockdown breast cancer cells and public transcriptomic datasets showed that TIM might play an immunosuppressive role in breast cancer. We found that TIM expression was inversely associated with CD8+ T lymphocyte infiltration in human breast cancer samples and subcutaneous tumor tissues. In vivo and in vitro experiments demonstrated that TIM knockdown increased CD8+ T lymphocyte antitumor activity. Furthermore, our results showed that TIM interacts with c-Myc to enhance the transcriptional capability of PD-L1 and facilitates the aggressiveness and progression of breast cancer through the intrinsic and extrinsic roles of PD-L1 overexpression. Moreover, public database analysis suggested that high TIM levels were positively related to PD-L1 inhibitor therapeutic response. Conclusions: Mechanistically, we first found that TIM could upregulate PD-L1 by interacting with c-Myc to enhance the transcriptional capability of c-Myc to PD-L1. Altogether, our findings not only provide a novel therapeutic strategy to treat breast cancer by targeting the oncogenic effect of TIM but also indicate that TIM is a promising biomarker for predicting the benefit of anti-PD-L1 immunotherapy. [ABSTRACT FROM AUTHOR]- Published
- 2023
- Full Text
- View/download PDF
19. The Fork Protection Complex: A Regulatory Hub at the Head of the Replisome
- Author
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Grabarczyk, Daniel B., Harris, J. Robin, Series Editor, Kundu, Tapas K., Advisory Editor, Korolchuk, Viktor, Advisory Editor, Bolanos-Garcia, Victor, Advisory Editor, and Marles-Wright, Jon, Advisory Editor
- Published
- 2022
- Full Text
- View/download PDF
20. TIMELESS mutation alters phase responsiveness and causes advanced sleep phase
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Kurien, Philip, Hsu, Pei-Ken, Leon, Jacy, Wu, David, McMahon, Thomas, Shi, Guangsen, Xu, Ying, Lipzen, Anna, Pennacchio, Len A, Jones, Christopher R, Fu, Ying-Hui, and Ptáček, Louis J
- Subjects
Biochemistry and Cell Biology ,Biomedical and Clinical Sciences ,Biological Sciences ,Genetics ,Sleep Research ,Basic Behavioral and Social Science ,Neurosciences ,Behavioral and Social Science ,2.1 Biological and endogenous factors ,Generic health relevance ,Good Health and Well Being ,Animals ,Cell Cycle Proteins ,Cell Line ,Circadian Clocks ,Circadian Rhythm ,Fibroblasts ,HEK293 Cells ,Humans ,Intracellular Signaling Peptides and Proteins ,Light ,Male ,Mice ,Mice ,Inbred C57BL ,Mutation ,Sleep ,TIMELESS ,human genetics ,mammalian circadian clock regulation ,familial advanced sleep phase - Abstract
Many components of the circadian molecular clock are conserved from flies to mammals; however, the role of mammalian Timeless remains ambiguous. Here, we report a mutation in the human TIMELESS (hTIM) gene that causes familial advanced sleep phase (FASP). Tim CRISPR mutant mice exhibit FASP with altered photic entrainment but normal circadian period. We demonstrate that the mutation prevents TIM accumulation in the nucleus and has altered affinity for CRY2, leading to destabilization of PER/CRY complex and a shortened period in nonmature mouse embryonic fibroblasts (MEFs). We conclude that TIM, when excluded from the nucleus, can destabilize the negative regulators of the circadian clock, alter light entrainment, and cause FASP.
- Published
- 2019
21. Photoperiodic adaptation of aanat and clock gene expression in seasonal populations of Daphnia pulex.
- Author
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Schwarzenberger, Anke, Bartolin, Patrick, and Wacker, Alexander
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- *
DAPHNIA pulex , *GENE expression , *MOLECULAR clock , *CLOCK genes , *MOLECULAR cloning , *PHYSIOLOGICAL adaptation , *ECOSYSTEMS - Abstract
Changes in day-length entrain the endogenous clock of organisms leading to complex responses to photoperiod. In long-lived organisms experiencing several seasons this response of the clock to photoperiod is phenotypically plastic. However, short-lived organisms often experience a single season without pronounced changes in day-length. For those, a plastic response of the clock to different seasons would not necessarily be adaptive. In aquatic ecosystems, zooplankton species like Daphnia live only for some weeks, i.e. one week up to ca. two months. However, they often show a succession of clones that are seasonally adapted to environmental changes. Here, we found that 16 Daphnia clones per each of three seasons (= 48 clones) from the same pond and year differed in clock gene expression with a homogenous gene expression pattern in ephippia-hatched spring clones and a bimodal expression pattern in summer and autumn populations indicating an ongoing adaptation process. We clearly demonstrate that spring clones were adapted to a short, and summer clones to a long photoperiod. Furthermore, we found that gene expression of the melatonin-synthesis enzyme AANAT was always lowest in summer clones. In the Anthropocene, Daphnia's clock might be disturbed by light-pollution and global warming. Since Daphnia is a key-organism in trophic carbon transfer, a disruption of its clock rhythm would be devastating for the stability of freshwater ecosystems. Our results are an important step in understanding the adaptation of Daphnia's clock to environmental changes. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
22. The breathless discourse. Narrating death in Louis-Ferdinand Céline’s 'Death on Credit,' Samuel Beckett’s 'The Unnamable' and Paul Auster’s '4321'
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Jørgen Veisland
- Subjects
exaiphnes ,sunyata ,timeless ,breathless ,death ,Language and Literature - Abstract
The article analyzes three modernist novels, Louis-Ferdinand Céline’s “Death on Credit,” Samuel Beckett’s “The Unnamable,” and Paul Auster’s “4321”. The texts examined manifest radical discursive changes that are connected with epistemological and ontological conceptions of mind and being. Modern conceptions of being are seen as being based on the non-concepts of exaiphnes, the timeless instant, as developed by Parmenides, sunyata as defined in Buddhist thought, and the indeterminacy of particles as discovered by quantum physics. The idea of being as a state of infinite potentiality impacts the discourse and the form of the modern novel as it moves in the direction of formlessness, thus mirroring the non-substantiality of the human subject. The narrators of the three novels speak at a breathless pace that punctuates and disrupts the narrative and that inserts death as the agent of the negation of meaning.
- Published
- 2022
- Full Text
- View/download PDF
23. A Phase III, prospective, double-blind, randomized, placebo-controlled trial of thrombolysis in imaging-eligible, late-window patients to assess the efficacy and safety of tenecteplase (TIMELESS): Rationale and design.
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Albers, Gregory W, Campbell, Bruce CV, Lansberg, Maarten G, Broderick, Joseph, Butcher, Ken, Froehler, Michael T, Schwamm, Lee H, Nouh, Amre M, Liebeskind, David S, Toy, Florence, Yang, Ming, Massaro, Lori, Schoeffler, Megan, and Purdon, Barbara
- Subjects
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STROKE patients , *INTERNAL carotid artery , *THROMBOLYTIC therapy , *ENDOVASCULAR surgery , *INTRACRANIAL hemorrhage , *CEREBRAL arteries - Abstract
Rationale: While thrombolysis is standard of care for patients with acute ischemic stroke (AIS) within 4.5 h of symptom onset, the benefit of tenecteplase beyond this time window is less certain. Aim: The TIMELESS trial (NCT03785678) aims to determine if treatment with tenecteplase increases the proportion of good clinical outcomes among patients with stroke due to a large vessel occlusion who present beyond 4.5 h after symptom onset. Sample size estimates: A total of 456 patients will provide ⩾90% power to detect differences in the distribution of modified Rankin Scale scores at Day 90 at the two-sided 0.049 significance level. Methods and design: TIMELESS is a Phase III, double-blind, randomized, placebo-controlled trial of tenecteplase with or without endovascular thrombectomy in patients with AIS and evidence of salvageable tissue via imaging who present within the 4.5- to 24-h time window with an internal carotid artery (ICA) or middle cerebral artery (MCA) (M1/M2) occlusion. Study outcomes: The primary efficacy objective of tenecteplase compared with placebo will be evaluated with ordinal modified Rankin Scale scores at Day 90. Safety will be evaluated via incidence of symptomatic intracranial hemorrhage, incidence and severity of adverse events, and mortality rate. Discussion: Results from TIMELESS will contribute to understanding of the safety and efficacy of tenecteplase administered 4.5–24 h following symptom onset for patients with an ICA or MCA occlusion. [ABSTRACT FROM AUTHOR]
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- 2023
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- View/download PDF
24. Natural alleles of the clock gene timeless differentially affect life-history traits in Drosophila.
- Author
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Andreatta, Gabriele, Montagnese, Sara, and Costa, Rodolfo
- Subjects
MOLECULAR clock ,LIFE history theory ,CLOCK genes ,ALLELES ,DROSOPHILA - Abstract
Circadian clocks orchestrate a variety of physiological and behavioural functions within the 24-h day. These timekeeping systems have also been implicated in developmental and reproductive processes that span more (or less) than 24 h. Whether natural alleles of cardinal clock genes affect entire sets of life-history traits (i.e., reproductive arrest, developmental time, fecundity), thus providing a wider substrate for seasonal adaptation, remains unclear. Here we show that natural alleles of the timeless (tim) gene of Drosophila melanogaster, previously shown to modulate flies' propensity to enter reproductive dormancy, differentially affect correlated traits such as early-life fecundity and developmental time. Homozygous flies expressing the shorter TIM isoform (encoded by the s-tim allele) not only show a lower dormancy incidence compared to those homozygous for ls-tim (which produce both the short and an N-terminal additional 23-residues longer TIM isoform), but also higher fecundity in the first 12 days of adult life. Moreover, s-tim homozygous flies develop faster than ls-tim homozygous flies at both warm (25°C) and cold (15°C) temperatures, with the gap being larger at 15°C. In summary, this phenotypic analysis shows that natural variants of tim affect a set of life-history traits associated with reproductive dormancy in Drosophila. We speculate that this provides further adaptive advantage in temperate regions (with seasonal changes) and propose that the underlying mechanisms might not be exclusively dependent on photoperiod, as previously suggested. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
25. Regulation of mineralocorticoid receptor activation by circadian protein TIMELESS.
- Author
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Clyne, Colin D., Kusnadi, Kevin P., Cowcher, Alexander, Morgan, James, Yang, Jun, Fuller, Peter J., and Young, Morag J.
- Subjects
- *
MINERALOCORTICOID receptors , *CELL cycle regulation , *STEROID receptors , *TRANSCRIPTION factors , *PROTEINS , *LIGAND binding (Biochemistry) , *SYNTHETIC genes , *CLOCK genes - Abstract
The mineralocorticoid receptor (MR) is a ligand-activated transcription factor that regulates cardiorenal physiology and disease. Ligand-dependent MR transactivation involves a conformational change in the MR and recruitment of coregulatory proteins to form a unique DNA-binding complex at the hormone response element in target gene promoters. Differences in the recruitment of coregulatory proteins can promote tissue-, ligand- or gene-specific transcriptional outputs. The goal of this study was to evaluate the circadian protein TIMELESS as a selective regulator of MR transactivation. TIMELESS has an established role in cell cycle regulation and DNA repair. TIMELESS may not be central to mammalian clock function and does not bind DNA; however, RNA and protein levels oscillate over 24 h. Co-expression of TIMELESS down-regulated MR transactivation of an MR-responsive reporter in HEK293 cells, yet enhanced transactivation mediated by other steroid receptors. TIMELESS markedly inhibited MR transactivation of synthetic and native gene promoters and expression of MR target genes in H9c2 cardiac myoblasts. Immunofluorescence showed aldosterone induces colocalisation of TIMELESS and MR, although a direct interaction was not confirmed by coimmunoprecipitation. Potential regulation of circadian clock targets cryptochrome 1 and 2 by TIMELESS was not detected. However, our data suggest that these effects may involve TIMELESS coactivation of oestrogen receptor alpha (ER). Taken together, these data suggest that TIMELESS may contribute to MR transcriptional outputs via enhancing ERα inhibitory actions on MR transactivation. Given the variable expression of TIMELESS in different cell types, these data offer new opportunities for the development of MR modulators with selective actions. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
26. About the timeless time in theater.
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PANDELE, Georgeta Simona
- Subjects
PREHISTORIC peoples ,TIME perspective ,ROMANTICISM ,INTERPERSONAL relations ,MIDDLE Ages ,CLASSICISM - Abstract
Copyright of Theatrical Colloquia is the property of George Enescu University of Arts, Artes Publishing House and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2023
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- View/download PDF
27. Identification of TIMELESS and RORA as key clock molecules of non-small cell lung cancer and the comprehensive analysis
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Haocheng Xian, Yuan Li, Boliang Zou, Yajuan Chen, Houqing Yin, Xuejun Li, and Yan Pan
- Subjects
Non-small cell lung cancer ,Circadian clock genes ,TIMELESS ,RORA ,Bioinformatics ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background The incidence rate of non-small cell lung cancer (NSCLC) has been increasing worldwide, and the correlation of circadian rhythm disruption with a raised risk of cancer and worse prognosis has been shown by accumulating evidences recently. On the other hand, drug resistance and the impact of tumor heterogeneity have been inevitable in NSCLC therapy. These both lead to an urgent need to identify more useful prognostic and predictive markers for NSCLC diagnosis and treatment, especially on the aspect of circadian clock genes. Methods The expression of the main clock genes in cancer was probed with TIMER and Oncomine databases. The prognostic value of key clock genes was probed systematically with the Kaplan–Meier estimate and Cox regression on samples from TCGA database. RT-qPCR was performed on patient tissue samples to further validate the results from databases. The functional enrichment analysis was performed using the “ClusterProfiler” R package, and the correlation of key clock genes with tumor mutation burden, immune checkpoint, and immune infiltration levels were also assessed using multiple algorithms including TIDE, TIMER2.0, and XCELL. Results TIMELESS was significantly upregulated in lung tissue of clinical lung cancer patients as well as TCGA and Oncomine databases, while RORA was downregulated. Multivariate Cox regression analysis indicated that TIMELESS (P = 0.004, HR = 1.21 [1.06, 1.38]) and RORA (P = 0.047, HR = 0.868 [0.755, 0.998]) has a significant correlation with overall survival in NSCLC. Genes related to TIMELESS were enriched in the cell cycle and immune system, and the function of RORA was mainly focused on oncogenic signaling pathways or glycosylation and protein activation. Also, TIMELESS was positively correlated with tumor mutation burden while RORA was negatively correlated with it. TIMELESS and RORA were also significantly correlated with immune checkpoint and immune infiltration levels in NSCLC. Additionally, TIMELESS showed a significant positive relationship with lipid metabolism. Conclusions TIMELESS and RORA were identified as key clock genes in NSCLC, and were independent prognostic factors for overall survival in NSCLC. The function of them were assessed in many aspects, indicating the strong potential of the two genes to serve as biomarkers for NSCLC progression and prognosis.
- Published
- 2022
- Full Text
- View/download PDF
28. Natural alleles of the clock gene timeless differentially affect life-history traits in Drosophila
- Author
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Gabriele Andreatta, Sara Montagnese, and Rodolfo Costa
- Subjects
circadian clock ,timeless ,developmental time ,early-life fecundity ,seasonality ,photoperiodism ,Physiology ,QP1-981 - Abstract
Circadian clocks orchestrate a variety of physiological and behavioural functions within the 24-h day. These timekeeping systems have also been implicated in developmental and reproductive processes that span more (or less) than 24 h. Whether natural alleles of cardinal clock genes affect entire sets of life-history traits (i.e., reproductive arrest, developmental time, fecundity), thus providing a wider substrate for seasonal adaptation, remains unclear. Here we show that natural alleles of the timeless (tim) gene of Drosophila melanogaster, previously shown to modulate flies’ propensity to enter reproductive dormancy, differentially affect correlated traits such as early-life fecundity and developmental time. Homozygous flies expressing the shorter TIM isoform (encoded by the s-tim allele) not only show a lower dormancy incidence compared to those homozygous for ls-tim (which produce both the short and an N-terminal additional 23-residues longer TIM isoform), but also higher fecundity in the first 12 days of adult life. Moreover, s-tim homozygous flies develop faster than ls-tim homozygous flies at both warm (25°C) and cold (15°C) temperatures, with the gap being larger at 15°C. In summary, this phenotypic analysis shows that natural variants of tim affect a set of life-history traits associated with reproductive dormancy in Drosophila. We speculate that this provides further adaptive advantage in temperate regions (with seasonal changes) and propose that the underlying mechanisms might not be exclusively dependent on photoperiod, as previously suggested.
- Published
- 2023
- Full Text
- View/download PDF
29. Association of the Timeless Gene with Prognosis and Clinical Characteristics of Human Lung Cancer.
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Ye, Jishi, Chen, Jingli, Wang, Juan, Xia, Zhongyuan, and Jia, Yifan
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- *
LUNG cancer , *REVERSE transcriptase polymerase chain reaction , *GENE expression , *GENETIC overexpression , *PROGNOSIS - Abstract
(1) Background: As the most common malignant tumor type worldwide, it is necessary to identify novel potential prognostic biomarkers to improve the poor prognosis of lung cancer. The Timeless gene, a circadian rhythm-related gene, is associated with several types of cancer. However, studies analyzing the clinical significance of the Timeless gene in patients with lung cancer are currently limited. (2) Methods: In the present study, the expression levels and prognostic potential of the Timeless gene and its co-expressed genes in different subtypes of lung cancer were explored using multiple bioinformatics approaches. The correlations between the Timeless gene and its co-expressed genes were validated using A549 and NCI-H226 cells by transfecting them with expression vectors and analyses using Western blot and reverse transcription-quantitative PCR. (3) Results: The Oncomine and GEPIA database analyses indicated that the expression of the Timeless gene was significantly higher in lung cancer as compared to that in the normal tissue. Using the UALCAN database, significant differences in Timeless gene expression were determined among different stages of lung cancer and between genders. A Kaplan–Meier plotter analysis indicated that high expression of the Timeless gene was associated with poor overall survival (OS) and progression-free survival (PFS) of patients with lung cancer. In the cBioPortal and GEPIA database analyses, extra spindle pole bodies like 1 (ESPL1) was the top correlated gene of Timeless in patients with lung cancer. Similar to the Timeless gene, high expression of the ESPL1 gene was also associated with poor OS and PFS. Of note, overexpression of the Timeless gene increased the expression level of ESPL1 at both the mRNA and protein levels. (4) Conclusion: The present study explored the clinical significance of the Timeless gene and its correlated gene ESPL1 in patients with lung cancer, thereby providing a potential therapeutic target for lung cancer. [ABSTRACT FROM AUTHOR]
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- 2022
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- View/download PDF
30. Activation of the clock gene TIMELESS by H3k27 acetylation promotes colorectal cancer tumorigenesis by binding to Myosin-9
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Meng Cao, Yi Wang, Yijing Xiao, Dandan Zheng, Chunchun Zhi, Xin Xia, and Xiaoqin Yuan
- Subjects
Timeless ,Myosin-9 ,Wnt/β-catenin pathway ,Colorectal cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Colorectal cancer (CRC) is a common tumor characterized by its high mortality. However, the underlying molecular mechanisms that drive CRC tumorigenesis are unclear. Clock genes have important roles in tumor development. In the present study, the expression and functions of clock gene TIMELESS (encoding the Timeless protein) in CRC were investigated. Methods Immunohistochemistry, cell proliferation, migration, invasion, EMT and xenograft tumor experiments were used to prove the function of Timeless in the tumorigenesis of CRC. Immunoprecipitation, mass spectrometry, Immunofluorescence and Chromatin immunoprecipitation (ChIP) were utilized to clarify the mechanism of Timeless in regulating CRC tumorigenesis. Results We found that Timeless was upregulated in CRC tissues compared with corresponding normal tissues and its expression was closely associated with the TNM stages and overall survival of CRC patients. Functional studies demonstrated that Timeless promoted the proliferation, invasion, and EMT of CRC cells in vitro and in vivo. Mechanistic investigations showed that Timeless activated the β-catenin signal pathway by binding to Myosin-9, which binds to β-catenin to induce its nuclear translocation. The upregulation of Timeless was attributed to CREB-binding protein (CBP)/p300-mediated H3K27 acetylation of the promoter region of Timeless. Conclusion Timeless regulates the tumorigenesis of CRC by binding to and regulating myosin-9, suggesting Timeless might be a potential prognostic biomarker and therapeutic target for CRC.
- Published
- 2021
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31. TIMELESS inhibits breast cancer cell invasion and metastasis by down-regulating the expression of MMP9
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Bowen Li, Liying Mu, Yanan Li, Kangkai Xia, Yuxi Yang, Sattout Aman, Bashir Ahmad, Shujing Li, and Huijian Wu
- Subjects
TIMELESS ,MMP9 ,Invasion ,Metastasis ,Breast cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Cytology ,QH573-671 - Abstract
Abstract Breast cancer is the first killer leading to female death, and tumor metastasis is one of the important factors leading to the death of patients, but the specific mechanism of breast cancer metastasis is not very clear at present. Our study showed that overexpression of TIMELESS could significantly inhibit the invasion and metastasis of breast cancer cells ZR-75-30 and the assembly of F-actin protein. On the contrary, knockdown of TIMELESS promoted the invasion and metastasis of breast cancer cells. Further study revealed that TIMELESS overexpression decreased the mRNA and protein levels of MMP9. Furthermore, TIMELESS could interact with p65, leading to repress the association of p65 and its acetyltransferase CBP and down-regulating the acetylation level of p65, which inhibited the activation of NF-κB signal pathway. In conclusion, our research showed that TIMELESS may repress the invasion and metastasis of breast cancer cells via inhibiting the acetylation of p65, inhibiting the activation of NF-κB, thus down-regulating the expression of MMP9, and then inhibiting the invasion and metastasis of breast cancer cells.
- Published
- 2021
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32. Local adaptation of life cycles in a butterfly is associated with variation in several circadian clock genes.
- Author
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Lindestad, Olle, Nylin, Sören, Wheat, Christopher W., and Gotthard, Karl
- Subjects
- *
MOLECULAR clock , *CLOCK genes , *BUTTERFLIES , *GENOMICS , *DIAPAUSE , *CRYPTOCHROMES - Abstract
Many insects exhibit geographical variation in voltinism, the number of generations produced per year. This includes high‐latitude species in previously glaciated areas, meaning that divergent selection on life cycle traits has taken place during or shortly after recent colonization. Here, we use a population genomics approach to compare a set of nine Scandinavian populations of the butterfly Pararge aegeria that differ in life cycle traits (diapause thresholds and voltinism) along both north–south and east–west clines. Using a de novo‐assembled genome, we reconstruct colonization histories and demographic relationships. Based on the inferred population structure, we then scan the genome for candidate loci showing signs of divergent selection potentially associated with population differences in life cycle traits. The identified candidate genes include a number of components of the insect circadian clock (timeless, timeless2, period, cryptochrome and clockwork orange). Most notably, the gene timeless, which has previously been experimentally linked to life cycle regulation in P. aegeria, is here found to contain a novel 97‐amino acid deletion unique to, and fixed in, a single population. These results add to a growing body of research framing circadian gene variation as a potential mechanism for generating local adaptation of life cycles. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
33. High Expression of TIMELESS Predicts Poor Prognosis: A Potential Therapeutic Target for Skin Cutaneous Melanoma
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Shixin Zhao, Shifeng Wen, Hengdeng Liu, Ziheng Zhou, Yiling Liu, Jinbao Zhong, and Julin Xie
- Subjects
skin cutaneous melanoma ,prognostic signature ,overall survival ,timeless ,immune infiltration ,bioinformatics ,Surgery ,RD1-811 - Abstract
BackgroundSkin cutaneous melanoma (SKCM) is the most lethal skin cancer with an increasing incidence worldwide. The poor prognosis of SKCM urgently requires us to discover prognostic biomarkers for accurate therapy. As a regulator of DNA replication, TIMELESS (TIM) has been found to be highly expressed in various malignancies but rarely reported in SKCM. The objective of this study was to evaluate the relationship between TIM and SKCM tumorigenesis and prognosis.MethodsWe obtained RNA sequencing data from TCGA and GTEx to analyze TIM expression and differentially expressed genes (DEGs). Subsequently, GO/KEGG, GSEA, immune cell infiltration analysis, and protein-protein interaction (PPI) network were used to perform the functional enrichment analysis of TIM-related DEGs. Moreover, the receiver operating characteristic (ROC) curves, Cox regression analysis, Kaplan–Meier (K-M) analysis, and nomograms were applied to figure out the clinical significance of TIM in SKCM. In addition, we investigated the relationship between TIM promoter methylation and SKCM prognosis through the UALCAN database. Finally, the immunohistochemical (IHC) results of normal skin and SKCM were analyzed to determine expression differences.ResultsTIM was significantly elevated in various malignancies, including SKCM, and high expression of TIM was associated with poor prognosis. Moreover, a total of 402 DEGs were identified between the two distinct TIM expression groups, and functional annotation showed enrichment with positive regulation of cell cycle and classic oncogenic pathways in the high TIM expression phenotype, while keratinization pathways were negatively regulated and enriched. Further analysis showed that TIM was correlated with infiltration of multiple immune cells. Finally, IHC validated the differential expression of TIM in SKCM.ConclusionTIM might play a pivotal role in tumorigenesis of SKCM and is closely related to its prognosis.
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- 2022
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34. The Sketch: An Ageless Drawing
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Maestre Galindo, Clara and Marcos, Carlos L., editor
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- 2019
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35. Identification of TIMELESS and RORA as key clock molecules of non-small cell lung cancer and the comprehensive analysis.
- Author
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Xian, Haocheng, Li, Yuan, Zou, Boliang, Chen, Yajuan, Yin, Houqing, Li, Xuejun, and Pan, Yan
- Subjects
NON-small-cell lung carcinoma ,CLOCK genes ,MOLECULAR clock ,PROGNOSIS ,CANCER genes - Abstract
Background: The incidence rate of non-small cell lung cancer (NSCLC) has been increasing worldwide, and the correlation of circadian rhythm disruption with a raised risk of cancer and worse prognosis has been shown by accumulating evidences recently. On the other hand, drug resistance and the impact of tumor heterogeneity have been inevitable in NSCLC therapy. These both lead to an urgent need to identify more useful prognostic and predictive markers for NSCLC diagnosis and treatment, especially on the aspect of circadian clock genes.Methods: The expression of the main clock genes in cancer was probed with TIMER and Oncomine databases. The prognostic value of key clock genes was probed systematically with the Kaplan-Meier estimate and Cox regression on samples from TCGA database. RT-qPCR was performed on patient tissue samples to further validate the results from databases. The functional enrichment analysis was performed using the "ClusterProfiler" R package, and the correlation of key clock genes with tumor mutation burden, immune checkpoint, and immune infiltration levels were also assessed using multiple algorithms including TIDE, TIMER2.0, and XCELL.Results: TIMELESS was significantly upregulated in lung tissue of clinical lung cancer patients as well as TCGA and Oncomine databases, while RORA was downregulated. Multivariate Cox regression analysis indicated that TIMELESS (P = 0.004, HR = 1.21 [1.06, 1.38]) and RORA (P = 0.047, HR = 0.868 [0.755, 0.998]) has a significant correlation with overall survival in NSCLC. Genes related to TIMELESS were enriched in the cell cycle and immune system, and the function of RORA was mainly focused on oncogenic signaling pathways or glycosylation and protein activation. Also, TIMELESS was positively correlated with tumor mutation burden while RORA was negatively correlated with it. TIMELESS and RORA were also significantly correlated with immune checkpoint and immune infiltration levels in NSCLC. Additionally, TIMELESS showed a significant positive relationship with lipid metabolism.Conclusions: TIMELESS and RORA were identified as key clock genes in NSCLC, and were independent prognostic factors for overall survival in NSCLC. The function of them were assessed in many aspects, indicating the strong potential of the two genes to serve as biomarkers for NSCLC progression and prognosis. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
36. The Dissimulation of the Timeless. Notes on Eisenman's "The End of...".
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Lörincz, Simina Anamaria and Pop, Florina
- Subjects
ARCHITECTURAL design ,ARCHITECTURAL education ,CITIES & towns ,LANGUAGE & languages - Abstract
In the mid-1980s, in the essay "The End of the Classical. The End of the Beginning, the End of the End," Peter Eisenman put forward for discussion the three recurring categories or classical values under whose influence architecture has been for the last five hundred years, representation, reason, and history, each one having a fundamental purpose. As the expression of an architectural idea, representation was intended to convey meaning through language; reason, or the rational source for design, was meant to embody the ideas of truth and logic; while history, as the continuous narrative of the past shaping the course of architecture, was aimed to recover the idea of timeless. Challenging this classical paradigm, the author attempted to demonstrate that these wellestablished values of architecture were in fact nothing other than simulations, concealed illusions that do not recognize their condition as fictions. Firstly, the fiction of representation becomes a simulation of meaning since it has lost its a priori source of significance, ceasing to intersect with language. Next, the fiction of reason proves to be a simulation of truth through the message of science, as analysis and reason replace the previous belief in the self-evident universe of values. Finally, the fiction of history reveals itself as a simulation of the timeless due to the loss or rejection of the universal values which used to ground architecture. With representation, reason, and history being nothing more than simulations, emerges the need and motive for these dominant categories of the classical to be reconsidered. What these fictions show is the fact that "there is no one truth (timeless truth), or one meaning (timeless meaning), but merely the timeless."1 Meaning and truth, released from the magnetism of simulation, fuse together under the idea of timeless, opening the possibility to separate timelessness from universality. [ABSTRACT FROM AUTHOR]
- Published
- 2022
37. Loss of Timeless Underlies an Evolutionary Transition within the Circadian Clock.
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Kotwica-Rolinska, Joanna, Chodáková, Lenka, Smýkal, Vlastimil, Damulewicz, Milena, Provazník, Jan, Wu, Bulah Chia-Hsiang, Hejníková, Markéta, Chvalová, Daniela, and Doležel, David
- Subjects
CIRCADIAN rhythms ,REVERSE genetics ,DROSOPHILA ,HUMAN beings ,VERTEBRATES - Abstract
Most organisms possess time-keeping devices called circadian clocks. At the molecular level, circadian clocks consist of transcription–translation feedback loops (TTFLs). Although some components of the negative TTFL are conserved across the animals, important differences exist between typical models, such as mouse and the fruit fly. In Drosophila , the key components are PERIOD (PER) and TIMELESS (TIM-d) proteins, whereas the mammalian clock relies on PER and CRYPTOCHROME (CRY-m). Importantly, how the clock has maintained functionality during evolutionary transitions between different states remains elusive. Therefore, we systematically described the circadian clock gene setup in major bilaterian lineages and identified marked lineage-specific differences in their clock constitution. Then we performed a thorough functional analysis of the linden bug Pyrrhocoris apterus , an insect species comprising features characteristic of both the Drosophila and the mammalian clocks. Unexpectedly, the knockout of timeless-d , a gene essential for the clock ticking in Drosophila , did not compromise rhythmicity in P. apterus , it only accelerated its pace. Furthermore, silencing timeless-m , the ancestral timeless type ubiquitously present across animals, resulted in a mild gradual loss of rhythmicity, supporting its possible participation in the linden bug clock, which is consistent with timeless-m role suggested by research on mammalian models. The dispensability of timeless-d in P. apterus allows drawing a scenario in which the clock has remained functional at each step of transition from an ancestral state to the TIM-d-independent PER + CRY-m system operating in extant vertebrates, including humans. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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38. Posttranslational regulation of Drosophila circadian clocks
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Cai, Yao
- Subjects
Molecular biology ,Genetics ,casein kinase ,Circadian clocks ,CLOCK ,Phosphorylation ,TIMELESS - Abstract
Circadian clocks enable organisms to anticipate predictable environmental changes over 24-hour day-night cycles on Earth to promote health and fitness. Since the discovery of the first clock gene in Drosophila melanogaster, Drosophila has been a model organism revealing the molecular underpinnings of animal circadian clocks. The first two chapters of this thesis will investigate the regulation of molecular clocks by posttranslational mechanisms. In particular, we will investigate the functions of core clock protein phosphorylation in Drosophila. Despite the importance of rhythmic gene expression programs produced by the molecular clock in generating daily biological rhythms, it has now been established that phosphorylation of core clock proteins that make up the molecular clock represent central and conserved timing mechanisms across organisms. Chapter One will investigate mechanisms by which phosphorylation regulates the major circadian transcriptional activator CLOCK (CLK) of rhythmic genes in D. melanogaster. CLK phosphorylation states exhibit daily rhythms and regulate its abundance, subcellular localization, and transcriptional activity. We characterized the role of casein kinase 1 alpha (CK1a) as a novel CLK kinase. We identified CK1a-dependent CLK phosphorylation sites using mass spectrometry proteomics. We next characterized the function of phosphorylation at Serine 13 (S13) residue. Our results showed that CLK(S13) phosphorylation reduces the binding activity of CLK to circadian promoters, therefore reducing CLK transcriptional activity. We also showed that CK1a-CLK interaction is dependent on PERIOD (PER), the circadian transcriptional repressor that is known to inhibit CLK function. We revealed a mechanism by which repressor-dependent phosphorylation of an activator inhibits its transcriptional activity and thus closing the transcriptional-translational feedback loop (TTFL) of the molecular clock. In Chapter Two, we focused on a comprehensive investigation of phosphorylation on TIMELESS (TIM), the heterodimeric partner of PER. We first identified phosphorylation sites on PER-bound TIM using mass spectrometry. We found that abolishing phosphorylation at some of these residues caused altered circadian behavioral rhythms. Phosphorylation at Serine 1404 (S1404) residue promotes TIM nuclear accumulation by reducing its interaction with exportin 1 (XPO1), a nuclear export machinery. Reduced nuclear localization of TIM in S1404A nonphosphorylatable fly mutants not only resulted in lower level of nuclear PER and TIM, but also showed dampened daily rhythms in CLK phosphorylation. This is likely caused by reduced recruitment of CLK kinase by PER-TIM complex. Taking Chapter One and Two together, we provide mechanistic insights into CLK and TIM phosphorylation and how these posttranslational modifications are indispensable for the maintenance of 24-hour molecular oscillation to regulate circadian rhythms.Chapter Three will review our current understanding of the function of Drosophila TIM (dTIM) and mammalian TIM (mTIM). dTIM is a cardinal clock protein, whereas the role of mTIM in regulating circadian rhythms are under debate since it was first identified over two decades ago. We will summarize the circadian and non-circadian roles of the two TIM paralogs and discuss the potential mechanisms by which mTIM regulates circadian rhythms via its non-circadian roles. We will conclude Chapter Three by summarizing recent findings about potential functional parallel between mTIM and dTIM. Overall, the research included in this thesis will provide mechanistic insights into the regulation of animal circadian clocks and contribute to future development of therapeutics for clock-related human diseases including cancer.
- Published
- 2022
39. DDK/Hsk1 phosphorylates and targets fission yeast histone deacetylase Hst4 for degradation to stabilize stalled DNA replication forks
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Shalini Aricthota and Devyani Haldar
- Subjects
sirtuin ,H3K56ac ,replication fork ,Swi1 ,timeless ,genome stability ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
In eukaryotes, paused replication forks are prone to collapse, which leads to genomic instability, a hallmark of cancer. Dbf4-dependent kinase (DDK)/Hsk1Cdc7 is a conserved replication initiator kinase with conflicting roles in replication stress response. Here, we show that fission yeast DDK/Hsk1 phosphorylates sirtuin, Hst4 upon replication stress at C-terminal serine residues. Phosphorylation of Hst4 by DDK marks it for degradation via the ubiquitin ligase SCFpof3. Phosphorylation-defective hst4 mutant (4SA-hst4) displays defective recovery from replication stress, faulty fork restart, slow S-phase progression and decreased viability. The highly conserved fork protection complex (FPC) stabilizes stalled replication forks. We found that the recruitment of FPC components, Swi1 and Mcl1 to the chromatin is compromised in the 4SA-hst4 mutant, although whole cell levels increased. These defects are dependent upon H3K56ac and independent of intra S-phase checkpoint activation. Finally, we show conservation of H3K56ac-dependent regulation of Timeless, Tipin, and And-1 in human cells. We propose that degradation of Hst4 via DDK increases H3K56ac, changing the chromatin state in the vicinity of stalled forks facilitating recruitment and function of FPC. Overall, this study identified a crucial role of DDK and FPC in the regulation of replication stress response with implications in cancer therapeutics.
- Published
- 2021
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40. CRISPR/Cas9‐based knockout reveals that the clock gene timeless is indispensable for regulating circadian behavioral rhythms in Bombyx mori.
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Nartey, Moses Addo, Sun, Xia, Qin, Sheng, Hou, Cheng‐Xiang, and Li, Mu‐Wang
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- *
CIRCADIAN rhythms , *GENOME editing , *SILKWORMS , *CRISPRS , *CLOCK genes , *MOLECULAR clock - Abstract
Circadian rhythms, which are ubiquitous and adaptive, occur across all species, from microbes to humans, in which they organize and modify behavior and physiology. timeless (tim) is a canonical clock gene. The core composition of the Drosophila melanogaster endogenous circadian clock has been extensively investigated; however, in lepidopteran insects, including Bombyx mori, the mechanism is complicated and little is known regarding the participation of tim in the negative feedback loop responsible for behavioral activities. To arrive at a comprehensive understanding of the role of tim in the B. mori endogenous circadian clock, we exploited the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR‐associated protein 9 gene editing system. We attempted to elucidate the functions of tim in the circadian clock of B. mori using Bmtim mutants. The knockouts affected two circadian behavioral activities: adult emergence and embryo hatching rhythms. Quantitative real‐time polymerase chain reaction results confirmed that tim‐knockouts induced relative reductions in the expression levels, and thereby the oscillation amplitudes, of Bmper and Bmclk messenger RNAs during both the photophase and scotophase. Additionally, the daily rhythmic expression of Bmdbt was upregulated in the photophase and downregulated in the scotophase in a tim‐knockout. Our study reveals that tim is integral to the B. mori circadian clock and may be involved in regulating eclosion and hatching rhythms. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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- View/download PDF
41. Analytic Aesthetics
- Author
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Mikkonen, Jukka, Stocker, Barry, editor, and Mack, Michael, editor
- Published
- 2018
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42. Timeless state of gravity: Black hole universal clock.
- Author
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Ali, Ahmed Farag
- Subjects
- *
HEISENBERG uncertainty principle , *GRAVITY , *BLACK holes , *SCHWARZSCHILD black holes - Abstract
We investigate Rindler's frame measurements. From its perspective, we found a geometric/gravitational interpretation of speed of light, mass and uncertainty principle. This can be interpreted as measurements of a black hole universal clock. This led to an emergence of a timeless state of gravity in a mathematically consistent way. In other words, space may be a frozen time. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
43. Activation of the clock gene TIMELESS by H3k27 acetylation promotes colorectal cancer tumorigenesis by binding to Myosin-9.
- Author
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Cao, Meng, Wang, Yi, Xiao, Yijing, Zheng, Dandan, Zhi, Chunchun, Xia, Xin, and Yuan, Xiaoqin
- Subjects
MOLECULAR clock ,CLOCK genes ,COLORECTAL cancer ,GENETIC regulation ,NEOPLASTIC cell transformation ,DEACETYLATION - Abstract
Background: Colorectal cancer (CRC) is a common tumor characterized by its high mortality. However, the underlying molecular mechanisms that drive CRC tumorigenesis are unclear. Clock genes have important roles in tumor development. In the present study, the expression and functions of clock gene TIMELESS (encoding the Timeless protein) in CRC were investigated. Methods: Immunohistochemistry, cell proliferation, migration, invasion, EMT and xenograft tumor experiments were used to prove the function of Timeless in the tumorigenesis of CRC. Immunoprecipitation, mass spectrometry, Immunofluorescence and Chromatin immunoprecipitation (ChIP) were utilized to clarify the mechanism of Timeless in regulating CRC tumorigenesis. Results: We found that Timeless was upregulated in CRC tissues compared with corresponding normal tissues and its expression was closely associated with the TNM stages and overall survival of CRC patients. Functional studies demonstrated that Timeless promoted the proliferation, invasion, and EMT of CRC cells in vitro and in vivo. Mechanistic investigations showed that Timeless activated the β-catenin signal pathway by binding to Myosin-9, which binds to β-catenin to induce its nuclear translocation. The upregulation of Timeless was attributed to CREB-binding protein (CBP)/p300-mediated H3K27 acetylation of the promoter region of Timeless. Conclusion: Timeless regulates the tumorigenesis of CRC by binding to and regulating myosin-9, suggesting Timeless might be a potential prognostic biomarker and therapeutic target for CRC. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
44. M6A-mediated hsa_circ_0061179 inhibits DNA damage in ovarian cancer cells via miR-143-3p/TIMELESS.
- Author
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Zhang Y, Wu Y, Shi X, Ding H, Zhou Y, Chen H, Shen F, Chen Y, Zhou J, Zhou D, and Wang J
- Subjects
- Animals, Female, Humans, Mice, Adenosine analogs & derivatives, Cell Line, Tumor, Methyltransferases, Mice, Inbred BALB C, Mice, Nude, Xenograft Model Antitumor Assays, Apoptosis, Cell Proliferation, DNA Damage, Gene Expression Regulation, Neoplastic, MicroRNAs genetics, Ovarian Neoplasms genetics, Ovarian Neoplasms pathology, Ovarian Neoplasms metabolism, RNA, Circular genetics
- Abstract
Ovarian cancer (OC) is among the most common and deadly solid malignancies in women. Despite many advances in OC research, the incidence of OC continues to rise, and its pathogenesis remains largely unknown. Herein, we elucidated the function of hsa_circ_0061179 in OC. The levels of hsa_circ_0061179, miR-143-3p, TIMELESS, and DNA damage repair-related proteins in OC or normal ovarian tissues and cells were measured using real-time quantitative polymerase chain reaction and immunoblotting. The biological effects of hsa_circ_0061179 and miR-143-3p on proliferation, clone formation, DNA damage, and apoptosis of OC cells were detected by the cell counting kit-8 assay, 5-methylethyl-2'-deoxyuridine, flow cytometry, the comet assay, and immunofluorescence staining combined with the confocal microscopy. The interaction among hsa_circ_0061179, miR-143-3p, and TIMELESS was validated by the luciferase reporter assay. Mice tumor xenograft models were used to evaluate the influence of hsa_circ_0061179 on OC growth in vivo. We found that human OC biospecimens expressed higher levels of hsa_circ_0061179 and lower levels of miR-143-3p. Hsa_circ_0061179 was found to bind with miR-143-3p, which directly targets TIMELESS. Hsa_circ_0061179 knockdown or miR-143-3p overexpression suppressed the proliferation and clone formation of OC cells and increased DNA damage and apoptosis of OC cells via the miR-143-3p/TIMELESS axis. Furthermore, we demonstrated that METTL3 could direct the formation of has_circ_0061179 through a specific m6A modification site. YTHDC1 facilitated the cytoplasmic transfer of has_circ_0061179 by directly binding to the modified m6A site. Our findings suggest that hsa_circ_0061179 acts as the sponge of miR-143-3p to activate TIMELESS signaling and inhibits DNA damage and apoptosis in OC cells., (© 2024 The Authors. Molecular Carcinogenesis published by Wiley Periodicals LLC.)
- Published
- 2024
- Full Text
- View/download PDF
45. Roles of SDE2 and TIMELESS at active and stalled DNA replication forks
- Author
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Natalie Lo, Julie Rageul, and Hyungjin Kim
- Subjects
genome instability ,dna replication stress ,sde2 ,timeless ,fork protection complex ,brca1/brca2 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The fork protection complex (FPC), comprising the TIMELESS (TIM)-TIPIN heterodimer, acts as a scaffold of the replisome to support seamless DNA replication. We recently showed that SDE2, a PCNA-associated DNA replication stress regulator, maintains the integrity of the FPC, and together with TIM, protects stalled replication forks from nucleolytic degradation.
- Published
- 2021
- Full Text
- View/download PDF
46. Molecular Approach to the Circadian Clock Mechanism in the Cricket
- Author
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Tomioka, Kenji, Uryu, Outa, Kamae, Yuichi, Moriyama, Yoshiyuki, Saifullah, ASM, Yoshii, Taishi, Horch, Hadley Wilson, editor, Mito, Taro, editor, Popadić, Aleksandar, editor, Ohuchi, Hideyo, editor, and Noji, Sumihare, editor
- Published
- 2017
- Full Text
- View/download PDF
47. The 2020 Pittendrigh/Aschoff Lecture: My Circadian Journey.
- Author
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Sehgal, Amita
- Subjects
- *
MOLECULAR clock , *SCIENCE education , *CLOCK genes , *WOMEN immigrants , *CIRCADIAN rhythms , *DROSOPHILA - Abstract
The circadian field has come a long way since I started as a postdoctoral fellow ~30 years ago. At the time, the only known animal clock gene was period, so I had the privilege of witnessing, and participating in, the molecular revolution that took us from the discovery of the circadian clock mechanism to the identification of pathways that link clocks to behavior and physiology. This lecture highlights my role and perspective in these developments, and also demonstrates how the successful use of Drosophila for studies of circadian rhythms inspired us to develop a fly model for sleep. I also touch upon my experiences as a non-white immigrant woman navigating my way through the US science and education system, and hope my story will be of interest to some. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
48. TIMELESS inhibits breast cancer cell invasion and metastasis by down-regulating the expression of MMP9.
- Author
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Li, Bowen, Mu, Liying, Li, Yanan, Xia, Kangkai, Yang, Yuxi, Aman, Sattout, Ahmad, Bashir, Li, Shujing, and Wu, Huijian
- Subjects
METASTATIC breast cancer ,BREAST cancer ,CANCER cells ,METASTASIS - Abstract
Breast cancer is the first killer leading to female death, and tumor metastasis is one of the important factors leading to the death of patients, but the specific mechanism of breast cancer metastasis is not very clear at present. Our study showed that overexpression of TIMELESS could significantly inhibit the invasion and metastasis of breast cancer cells ZR-75-30 and the assembly of F-actin protein. On the contrary, knockdown of TIMELESS promoted the invasion and metastasis of breast cancer cells. Further study revealed that TIMELESS overexpression decreased the mRNA and protein levels of MMP9. Furthermore, TIMELESS could interact with p65, leading to repress the association of p65 and its acetyltransferase CBP and down-regulating the acetylation level of p65, which inhibited the activation of NF-κB signal pathway. In conclusion, our research showed that TIMELESS may repress the invasion and metastasis of breast cancer cells via inhibiting the acetylation of p65, inhibiting the activation of NF-κB, thus down-regulating the expression of MMP9, and then inhibiting the invasion and metastasis of breast cancer cells. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
49. Timeless couples G‐quadruplex detection with processing by DDX11 helicase during DNA replication.
- Author
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Lerner, Leticia K, Holzer, Sandro, Kilkenny, Mairi L, Šviković, Saša, Murat, Pierre, Schiavone, Davide, Eldridge, Cara B, Bittleston, Alice, Maman, Joseph D, Branzei, Dana, Stott, Katherine, Pellegrini, Luca, and Sale, Julian E
- Subjects
- *
DNA replication , *DNA structure , *DNA synthesis , *NUCLEOTIDE sequence , *REPLISOMES , *DNA damage , *DNA helicases - Abstract
Regions of the genome with the potential to form secondary DNA structures pose a frequent and significant impediment to DNA replication and must be actively managed in order to preserve genetic and epigenetic integrity. How the replisome detects and responds to secondary structures is poorly understood. Here, we show that a core component of the fork protection complex in the eukaryotic replisome, Timeless, harbours in its C‐terminal region a previously unappreciated DNA‐binding domain that exhibits specific binding to G‐quadruplex (G4) DNA structures. We show that this domain contributes to maintaining processive replication through G4‐forming sequences, and exhibits partial redundancy with an adjacent PARP‐binding domain. Further, this function of Timeless requires interaction with and activity of the helicase DDX11. Loss of both Timeless and DDX11 causes epigenetic instability at G4‐forming sequences and DNA damage. Our findings indicate that Timeless contributes to the ability of the replisome to sense replication‐hindering G4 formation and ensures the prompt resolution of these structures by DDX11 to maintain processive DNA synthesis. Synopsis: How eukaryotic replisomes detect and respond to DNA secondary structures is poorly understood. Here, cooperation of the fork protection complex subunit Timeless and the helicase DDX11 is found to bind and resolve G‐quadruplex (G4) DNA during replication. Timeless, a core component of the replisome, contains a C‐terminal DNA binding domain with specificity for G4 secondary structures.The DNA‐binding domain acts in partial redundancy with an adjacent PARP‐binding domain to maintain processive replication through G4s.The ability of Timeless to maintain replication through G4s requires interaction with the DDX11 helicase.Loss of Timeless or DDX11 leads to G4‐associated epigenetic instability and DNA damage [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
50. Aberrantly Expressed Timeless Regulates Cell Proliferation and Cisplatin Efficacy in Cervical Cancer.
- Author
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Zhou, Jinhua, Zhang, Yinghui, Zou, Xinwei, Kuai, Lingling, Wang, Li, Wang, Juan, Shen, Fangrong, Hu, Jinghui, Zhang, Xia, Huang, Yazhen, and Chen, Youguo
- Subjects
- *
CERVICAL cancer , *CELL proliferation , *CISPLATIN , *CANCER cell proliferation , *WESTERN immunoblotting - Abstract
Timeless is a regulator of molecular clockwork in Drosophila and related to cancer development in mammals. This study aimed to investigate the effect of Timeless on cell proliferation and cisplatin sensitivity in cervical cancer. Timeless expression was determined by bioinformatics analysis, immunohistochemistry, and quantitative polymerase chain reaction (qPCR). Chromatin immunoprecipitation assays and reporter gene assays were applied to determine the transcriptional factor contributing to Timeless upregulation. The effects of Timeless depletion on cell proliferation and cisplatin sensitivity were determined through in vitro and in vivo experiments. Cell apoptosis and senescence were assessed by flow cytometry and β-galactosidase staining. DNA damage and DNA repair pathways were determined by comet assay, immunofluorescent staining, and Western blot analysis. Timeless is aberrantly expressed in ∼52.5% of cervical cancer tissues. E2F1 and E2F4 contribute to the transcriptional activation of Timeless. Timeless depletion inhibits cell proliferation and increases cisplatin sensitivity in vitro and in vivo. Knockdown of Timeless induces cell apoptosis and cell senescence. Mechanically, Timeless silencing leads to DNA damage and impairs the activation of the ATR/CHK1 pathway in response to cisplatin in cervical cancer. Timeless is overexpressed in cervical cancer and regulates cell proliferation and cisplatin sensitivity, presenting an attractive target for cisplatin sensitizer in cervical cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
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