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Background: Tobacco (Nicotiana tabacum L.) is an important economic crop, and the use of plant growth-promoting bacteria (PGPB) to enhance its growth and suppress soil-borne diseases has garnered considerable research interest. However, the potential of yeast to augment the growth-promoting and disease-suppressing effects of PGPB on tobacco remains unclear. Methods: This study investigated the effects of Pichia sp. microbial fertilizer (J1), PGPB- Klebsiella oxytoca microbial fertilizer (ZS4), and their composite fertilizer (JZ) on tobacco growth indexes, soil properties, and soil microbial community through a pot experiment. Additionally, field experiments were conducted to further assess the efficacy of the composite microbial fertilizer on tobacco growth and the incidences of soil-borne diseases, including tobacco bacterial wilt (TBW) and tobacco black shank (TBS). Results and discussions: In the pot experiment, application of the microbial fertilizers significantly enhanced soil organic matter (OM), total nitrogen (TN), total phosphorus (TP), total potassium (TK), available phosphorus (AP), and available potassium (AK) levels. Compared to the control group (CK), J1, ZS4, and JZ microbial fertilizers significantly promoted tobacco growth, and the composite microbial fertilizers demonstrated superior to the individual microbial fertilizers. We found that the application of microbial fertilizer led to significant alterations in the structure and composition of the bacterial and fungal communities based on the high-throughput sequencing of 16S rRNA and internal transcribed spacer (ITS) regions. The bacterial and fungal diversity indexes showed a decreasing trend. Key microorganisms such as Sphingomonas , Kitasatospora , Nitrosospira , Mortierella , and Trichoderma were identified as influential in regulating soil physicochemical parameters to enhance tobacco growth. Functional prediction further demonstrated a significant increase in the relative abundances of certain enzymes, including Alkaline phosphatase, 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase), and Peroxidase, as well as antimicrobial substances like Tetracycline, Isoquinoline alkaloid, and Phenylpropanoids, following inoculation with the fertilizer. Besides, field experiments revealed that the JZ fertilizer significantly promoted tobacco growth and reduced the incidence of TBW and TBS, indicating its potential for further application in tobacco cultivation. [ABSTRACT FROM AUTHOR]

Introduction: Plastic film mulching has been widely used to enhance soil hydrothermal conditions and increase crop yields in cool, semi-arid areas. However, its impact on soil microbial carbon metabolic activity and functional diversity during plant growth remains unclear despite their important roles in nutrient cycling and soil quality evaluation. Methods: This study used the Biolog EcoPlate technique to investigate the dynamics and driving factors of soil microbial carbon metabolic activity and functional diversity at different maize growth stages following plastic film mulching. Results and discussion: The results revealed that film mulching significantly increased microbial carbon metabolic activities [represented by average well color development (AWCD)] by 300% at the seedling stage and by 26.8% at maturity but decreased it by 47.4% at the flowering stage compared to the control (without mulching). A similar trend was observed for the microbial functional diversity index. Redundancy analysis identified soil moisture (SM), soil temperature (ST), dissolved organic carbon (DOC), microbial biomass carbon (MBC), and bacteria amounts as the primary factors influencing changes in soil microbial carbon source utilization. The mulch treatment significantly increased SM at all growth stages, while its warming effect disappeared at the flowering stage. Soil DOC, MBC, and bacterial populations were notably higher under mulching at the seedling and maturity stages but lower at the flowering stage. Pearson correlation analysis showed that changes in SM, ST, DOC, MBC, and bacterial populations positively correlated with the utilization of all carbon source classes, AWCD, and functional diversity indexes after film mulching. Furthermore, maize grain yield and water use efficiency increased by 142 and 129%, respectively, following film mulching. In conclusion, plastic film mulching enhanced soil microbial carbon metabolic activity and functional diversity at the seedling and maturity stages, improving crop yields in cool, semi-arid areas. Furthermore, the decrease in soil carbon metabolic capacity at flowering stage highlights that supplementing soil carbon sources should be considered after continuous film mulching to sustain or enhance farmland productivity and soil quality. [ABSTRACT FROM AUTHOR]

Nitrous oxide (N2O) is one of the most important climate-forcing gases, and a large portion of global anthropogenic N2O emissions come from agricultural soils. Yet, how contrasting global change factors and agricultural management can interact to drive N2O emissions remains poorly understood. Here, conducted within a rice–wheat cropping system, we combined a two-year field experiment with two pot experiments to investigate the influences of elevated atmospheric carbon dioxide (eCO2) and crop straw addition to soil in altering N2O emissions under wheat cropping. Our analyses identified consistent and significant interactions between eCO2 and straw addition, whereby eCO2 increased N2O emissions (+ 19.9%) only when straw was added, and independent of different N fertilizer gradients and wheat varieties. Compared with the control (i.e., ambient CO2 without straw addition), eCO2 + straw addition increased N2O emission by 44.7% and dissolved organic carbon to total dissolved nitrogen (DOC/TDN) ratio by 115.3%. Similarly, eCO2 and straw addition significantly impacted soil N2O-related microbial activity. For instance, the ratio of the abundance of N2O production genes (i.e., nirK and nirS) to the abundance of the N2O reduction gene (i.e., nosZ) with straw addition was 26.0% higher than that without straw under eCO2. This indicates an increased denitrification potential and suggests a change in the stoichiometry of denitrification products, affecting the balance between N2O production and reduction, leading to an increase in N2O emissions. Taken together, our results emphasize the critical role of the interaction between the specific agronomic practice of straw addition and eCO2 in shaping greenhouse gas emissions in the wheat production system studied, and underline the need to test the efficacy of greenhouse gas mitigation measures under various management practices and global change scenarios. [ABSTRACT FROM AUTHOR]

Heavy metal-contaminated soil has a great impact on yield reduction of vegetable crops and soil microbial community destruction. Biochar-derived waste biomass is one of the most commonly applied soil conditioners in heavy metal-contaminated soil. Different heavy metal-contaminated soil added with suitable biochars represent an intriguing way of the safe production of crops. This study investigated the effects of two types of biochar [rice husk biochar (RHB) and sugarcane bagasse biochar (SBB)] on Cd and Pb accumulation in Shanghaiqing (SHQ, a variety of Brassica campestris L.) and Fengyou 737 (FY, a variety of Brassica napus), as well as on the soil microbial community, through a field experiment. RHB and SBB were characterized by scanning electron microscopy, Fourier transform infrared spectroscopy, and Brunauer–Emmet–Teller method. The results showed that RHB and SBB displayed the higher pH, cation exchange capacity and pore properties, and the addition of RHB and SBB enhanced soil pH and rhizosphere microorganisms promoting vegetables yield. RHB treatments were more effective than SBB in reducing upward transfer of Cd and Pb, blocking the accumulation of Cd and Pb in the edible parts of SHQ and FY, and decreasing soil Cd and Pb bioavailability. Additionally, RHB and SBB changed the composition of the rhizosphere soil microbial community. The application of biochar promoted the growth of ecologically beneficial bacteria (Nitrospira, Opitutus, and Gemmatimonas) and fungi (Mortierella and Holtermanniella), whereas reducing the enrichment of plant pathogenic fungi (Alternaria, Stagonosporopsis, Lectera, and Periconia) in rhizosphere soil. Our findings demonstrated that the application of RHB significantly reduces Cd and Pb accumulation in the edible parts by decreasing the soil Cd and Pb bioavailability and altering the rhizosphere microbial community composition in two Brassica vegetables grown on Cd/Pb-contaminated soils. Thus, the application of two biochar, especially RHB is a feasible strategy for the safe production of vegetable crops in Cd/Pb co-contaminated soils. [ABSTRACT FROM AUTHOR]

The accumulation of cadmium (Cd) in facility soil is attracting increasing attention. Reductive soil disinfestation (RSD) is an effective soil disinfectionmethod, while also having a certain passivating effect on Cd. The application of organic matter is crucial for the success of RSD, but the reduction efficiencies of different organic materials vary. Here, five treatments, namely untreated soil (CK), bean dregs (BD), peanut dregs (PD), sesame dregs (SD), and apple dregs (AD) were applied, and their performances in Cd immobilization in Cd-contaminated soil were assessed. Changes in soil properties and microbial communities were monitored. The results showed that the overall soil pH following RSD treatment decreased significantly, while organic matter, hydrolyzed nitrogen, available phosphorus, available potassium, exchangeable calcium, and exchangeable magnesium increased significantly. Compared to CK, the exchangeable (EX)-Cd contents after treatments SD and AD significantly decreased by 25.4% and 23.7%, respectively. RSD led to significant changes in the composition of soil microbial communities. SD treatment significantly increased the number of soil fungal operational taxonomic units (OTU), while BD, PD, and SD significantly increased the relative abundances of Bacteroidetes, Chloroflexi, Deinococus Thermus, and Basidiomycota in bacterial communities. The Gemmatimonadetes phylumshowed a highly significant negative correlation with EX-Cd, indicating that it might have a positive effect on the fixation of Cd in polluted soil. SD significantly reduced the Cd content in the above-ground parts of lettuce by 74.76%, and had the least impact on lettuce biomass. It can be inferred that RSD is an ecologically effective method for the remediation of Cd pollution in facility soil by improving soil characteristics and altering microbial community composition to reduce Cd activity. However, further in-depth research is needed to optimize the types and amounts of organic materials applied. [ABSTRACT FROM AUTHOR]

About 35% of grassland in Sanjiangyuan area of China has degenerated into black‐soil mountain. Artificial grassland is considered to be an effective measure to alleviate the severely degraded grassland in the alpine region of the three rivers and has been widely used. However, the pattern, potential function, and changes of carbon and nitrogen contents of soil microorganisms in degraded grassland in Heimushan by planting artificial grassland are still unclear. In this study, mixed‐sown artificial alpine grassland (AG) was the focus of our study, whereas degraded black‐soil mountain grassland (BG) and natural alpine grassland (NG) served as controls. Illumina 16S and ITS gene sequence analyses were used to analyze the community structure of the soil bacteria and fungi. The functional groups of NG, AG, and BG were predicted using the FAPROTAX and FUNGuild databases. In addition, the levels of soil carbon, nitrogen, and soil enzyme activities were evaluated. The results indicated a significant increase in the aboveground biomass of BG due to the planting artificial grassland. Moreover, the contents of total carbon (TC), total nitrogen (TN), ammonium nitrogen (NH4+−N$$ {\mathrm{NH}}_4^{+}-\mathrm{N} $$), microbial biomass carbon (MBC), microbial biomass nitrogen (MBN), and leucine aminopeptidase (LAP) increased in the soil. Planting artificial grasslands changed the composition of bacterial and fungal communities. Among these, the bacterial community was more sensitive to planting artificial grasslands. The relative abundance of bacterial functional groups involved in carbon and nitrogen cycling changed significantly, suggesting that bacteria may play a role in regulating nutrient cycling during artificial grassland planting. Soil TC, TN, LAP, and NH4+−N$$ {\mathrm{NH}}_4^{+}-\mathrm{N} $$ affected the microbial community structure related to carbon and nitrogen. NH4+−N$$ {\mathrm{NH}}_4^{+}-\mathrm{N} $$ and β‐1,4‐glucosidase were carbon and nitrogen factors, respectively, that affected functional changes in fungi. These results indicate that planting artificial grasslands can effectively enhance the productivity of degraded black‐soil mountain and regulate soil microbial communities and soil physical and chemical properties. [ABSTRACT FROM AUTHOR]

Unreasonable grassland use has degraded the alpine meadow on the Qinghai‐Tibetan Plateau in the past half a century, and approximately 32.1% of the degraded meadows degenerated to bare grassland. Artificial grassland reconstruction is a widespread measure for rebuilding the grassland ecosystems of these bare grasslands. However, does the soil microbe community structure improve with the aboveground vegetation restoration? Which microflora are more sensitive to environmental changes are not unclear. Thus, we analyzed four artificial grasslands established for different years on extreme‐degraded (ED) grasslands of the alpine meadows. These artificial grasslands were rationally utilized by grazing Tibetan sheep and Yak from December to April and were completely grazing‐prohibited in other seasons. In 2017, four plots of approximately 2400 m2 for each artificial restoration grassland (3, 6, 9, and 12 years) were selected as treatments with non‐degraded (ND) and ED meadows as controls. The potential predictors and regulators for soil microbial community structures and functions in the alpine meadows were evaluated. The results showed that artificial restoration did not affect soil microbe community compositions but dramatically changed the community constructions. The bacterial community structure was more sensitive to artificial interference than fungal. Actinobacteria, Acidobacteria, and Mortierellomycota could be used as indicators of environmental changes. Compared with ED grassland, the soil microbial biomass carbon increased significantly by 29.5% and 33.7% in 6 and 9 years grasslands, respectively. The species richness and below‐ground biomass of grassland vegetation play a decisive role in soil microbial community and functional structures, while the soil water content and organic carbon, and soil elemental balance play a regulating role. Moreover, the abundance of soil bacteria with ureolysis and nitrogen fixation functions decreased significantly in grassland degradation, and soil pH played a major regulatory role. In conclusion, the vegetation and soil of artificial grasslands were in good condition after 6 years of artificial restoration. However, all the indexes declined to different degrees after 12 years of establishment, and the grassland ecosystem faced the risk of secondary degradation. The mixed sowing of many plant species with developed root systems should be adopted when artificially restoring degenerated alpine grasslands. Simultaneously, soil organic material supplementation and the balanced application of nitrogen and phosphorus fertilizers are recommended. [ABSTRACT FROM AUTHOR]

Different land‐use practices in temperate forests strongly affect soil quality and soil microbial communities, whereas the assembly and interactions of soil functional fungal communities provide positive feedback. Therefore, the effects of forest ecosystem degradation on the composition of functional soil fungal community and soil nutrient cycling are of particular importance. We studied forest ecosystems in the Liupanshan Mountains in the northwestern part of the Loess Plateau and analyzed the relationship of soil fungal community and soil nutrient cycling under different land use practices (natural forest [NF], plantation forest, and farmland [FL]). The results showed that soil pH and electrical conductivity were the highest in FL, whereas the soil carbon cycle index and nitrogen cycle index decreased. The soil total phosphorus content did not change significantly with an increase in available phosphorus content. The change from NF to FL significantly increased the number of operational taxonomic units, diversity, and richness of soil fungal communities. The composition of the soil fungal communities was also strongly influenced by carbon and nitrogen cycle indices. In addition, FL reclamation increased the complexity of the soil microorganism co‐occurrence network, and the interrelationships between soil functional fungal community were enhanced. Pathogenic fungal communities were enriched in FLs, and their relative abundance was significantly regulated by environmental factors such as pH and the ratio of nitrogen to phosphorus. The soil pathogenic fungal community affected carbon and nitrogen cycle indices to varying degrees. [ABSTRACT FROM AUTHOR]

The surge in global energy demand mandates a significant expansion of electric power substations. Nevertheless, the ecological consequences of electric power substation operation, particularly concerning the electromagnetic field, on soil microbial communities and nitrogen enrichment remain unexplored. In this study, we collected soil samples from six distinct sites at varying distances from an electric power substation in Xintang village, southeastern China, and investigated the impacts of electromagnetic field on the microbial diversity and community structures employing metagenomic sequencing technique. Our results showed discernible dissimilarities in the fungal community across the six distinct sites, each characterized by unique magnetic and electric intensities, whereas comparable variations were not evident within bacterial communities. Correlation analysis revealed a diminished nitrogen fixation capacity at the site nearest to the substation, characterized by low moisture content, elevated pH, and robust magnetic induction intensity and electric field intensity. Conversely, heightened nitrification processes were observed at this location compared to others. These findings were substantiated by the relative abundance of key genes associated with ammonium nitrogen and nitrate nitrogen production. This study provides insights into the relationships between soil microbial communities and the enduring operation of electric power substations, thereby contributing fundamental information essential for the rigorous environmental impact assessments of these facilities. [ABSTRACT FROM AUTHOR]

Codonopsis pilosula is an important medicinal plant in China. Continuous cropping of C. pilosula affects crop quality and yield. However, comprehensive research on the impacts of continuous cropping on soil properties, microbial community structures, and soil metabolites is lacking. This study involved collecting rhizosphere soil samples from C. pilosula monocropped for 1 to 4 years to analyze variations in soil properties, microbial community structure, and metabolites across different continuous-cropping years (CCYs) through metabolomic and microbiomic analyses. Significant variations in the soil properties were observed; total phosphorus (TP) and available potassium (AK) in the rhizosphere soil increased with the number of CCYs, and pH declined. The microbial community structure significantly changed with continuous cropping. Overall, the soil bacterial diversity decreased with increasing CCY. The abundances of Proteobacteria and Firmicutes significantly decreased with increasing CCY, whereas the abundance of Acidobacteria significantly increased. The fungal diversity tended to decrease, with an increase in the abundance of beneficial Basidiomycota and an increase in potentially pathogenic Rozellomycota. Metabolomic analysis revealed 101 metabolites and significant changes in lipid compounds, organic acids, phenols, and carbohydrates. Notably, autotoxic substances such as 2,6-di-tert-butylphenol accumulated with increasing CCY. The results indicated that the main factors causing continuous-cropping obstacles in C. pilosula were soil nutrient imbalance and autotoxic substance accumulation. Continuous cropping of C. pilosula significantly altered the microbial community structure and metabolomic profile of rhizosphere soils. Effective management practices are needed to mitigate soil acidification, nutrient imbalances, and autotoxic substance accumulation during continuous cropping. Future research should focus on integrated soil management strategies to maintain soil health and crop productivity in C. pilosula continuous-cropping systems. [ABSTRACT FROM AUTHOR]

Excessive use of inorganic fertilizers disrupts soil nutrient balance and leads to soil degradation and a decrease in biodiversity. In contrast, bio-fertilizers enhance soil structure and fertility and promote plant growth and sustainable agriculture development. Therefore, this study focused on a rotation system of winter wheat and summer maize and aimed to explore the effects of applying chemical fertilizer (NPK) and bio-fertilizer (BF) in the winter wheat season on the sustainable soil development of current wheat and subsequent maize. Before sowing winter wheat four fertilization treatments were, respectively CK (100% NPK at 750 kg ha−1), A (60% NPK at 450 + 20% BF at 150 kg ha−1), B (60% NPK at 450 + 40% BF at 300 kg ha−1), and C (60% NPK at 450 + 60% BF at 450 kg ha−1), conducted. The results showed that treatment A (60% NPK + 20% BF) replacing the NPK at 300 kg ha−1 with BF at 150 kg ha−1 significantly soil nutrient contents, enzyme activity, and microbial metabolic activity. The study also found a positive correlation between soil parameters (total nitrogen, alkaline nitrogen, available phosphorus, organic matter, urease, and alkaline phosphatase in the winter wheat and maize cropping season). Furthermore, the soil microbial composition showed significant enrichment of Proteobacteria, Acidobacteria, Actinobacteria, and Firmicutes, and variations among treatments. Moreover, the application of biofertilizer enhanced the diversity of soil fungi species, particularly during the winter wheat season. This study highlights the importance of integrating biofertilizers with NPK fertilizer for agricultural system conversion and promoting agricultural production and sustainability. [ABSTRACT FROM AUTHOR]

The preservation of edaphic quality and productivity is critical for the ecological sustainability of vine orchards. The heavy utilization of intensified tillage and singular chemical fertilizers can shift changes in edaphic physicochemical and biological features, thus exerting significant pressure on agroecosystems. In current research, we assessed the shifts in soil physicochemical features and soil microbiome composition over 11 years carrying out no tillage and organic fertilizer substitution in a typical Chinese Guanzhong kiwifruit production area, and explore the fundamental factors that contribute to alterations in the microbial community and the influence on kiwifruit performance. Results showed that long‐term no tillage and organic fertilizer improved the soil condition by significantly increasing the proportion of soil macroaggregates, bulk density, and nutrient content (e.g., organic matter, nitrogen, and ammonia), as compared to conventional tillage with chemical fertilization. Moreover, no tillage significantly increased soil bacterial α‐diversity but had no significant effects on fungal. No tillage also enhanced the abundance of potential beneficial soil bacteria (e.g., Acidobacteria, Actinobacteria, and Nitrospira), while decreasing the abundance of Proteobacteria, Pseudomonas, and Fusarium. In addition, no tillage and mixed fertilized soil microbial network exhibited higher complexity (i.e., node and edge numbers, and positive edge proportion) and connectivity (i.e., average number of neighbors) than conventional tillage and chemical fertilization group. Changes in nitrate, ammonia, available phosphorus, and pH values accounted for the variation in the structure of soil microbial community. Hence, the utilization of both no tillage and organic fertilization practices could serve as a suitable and sustainable approach for managing kiwifruit production in the fragile environmental conditions of the Chinese Guanzhong region, and lead to an improvement in soil nutrient levels and help regulate the soil microbial community. [ABSTRACT FROM AUTHOR]

Ecosystems that experience elevated CO2 (eCO2) are crucial interfaces where intricate interactions between plants and microbes occur. This study addressed the impact of eCO2 and a N supply on faba bean (Vicia faba L.) growth and the soil microbial community in auto-controlled growth chambers. In doing so, two ambient CO2 concentrations (aCO2, daytime/nighttime = 410/460 ppm; eCO2, 550/610 ppm) and two N supplement levels (without a N supply—N0—and 100 mg N as urea per kg of soil—N100) were applied. The results indicated that eCO2 mitigated the inhibitory effects of a N deficiency on legume photosynthesis and affected the CO2 assimilation efficiency, in addition to causing reduced nodulation. While the N addition counteracted the reductions in the N concentrations across the faba beans' aboveground and belowground plant tissues under eCO2, the CO2 concentrations did not significantly alter the soil NH4+-N or NO3−-N responses to a N supply. Notably, under both aCO2 and eCO2, a N supply significantly increased the relative abundance of Nitrososphaeraceae and Nitrosomonadaceae, while eCO2 specifically reduced the Rhizobiaceae abundance with no significant changes under aCO2. A redundancy analysis (RDA) highlighted that the soil pH (p < 0.01) had the most important influence on the soil microbial community. Co-occurrence networks indicated that the eCO2 conditions mitigated the impact of a N supply on the reduced structural complexity of the soil microbial communities. These findings suggest that a combination of eCO2 and a N supply to crops can provide potential benefits for managing future climate change impacts on crop production. [ABSTRACT FROM AUTHOR]

Rhizosphere microorganisms play a pivotal role in biogeochemical cycles, particularly in relation to carbon (C) and nitrogen (N) cycles. However, the impact of stand age on the composition of rhizosphere microbial communities and the abundance involved in C and N cycling remains largely unexplored in restoration ecosystems dominated by shrubs of temperate deserts. This study focuses on revealing changes in microbial composition and functional genes in the rhizosphere soil of Caragana korshinskii after revegetation, as well as their response mechanisms to changes in environmental factors. The alpha diversity of bacteria tended to increase with stand age, whereas that of fungi decreased. The abundance of denitrification; dissimilatory nitrate reduction to ammonium, nitrification, and ammonium assimilation; and C fixation-related gene levels increased with stand age, whereas those related to the degradation of starch, pectin, hemicellulose, cellulose, and aromatics decreased. The parameters MBC, MBN, and TC were the key factors affecting the bacterial community, whereas the fungal community was regulated by TN, EC, pH, and MBC. Stand age indirectly regulated C and N cycling functions of genes through altered soil properties and microbial community structures. This study presents a novel approach to accurately evaluate the C and N cycling dynamics within ecosystems at various stages of restoration. [ABSTRACT FROM AUTHOR]

A two-year field trial was conducted in order to assess techniques to control ginger blast and explore the effects of fumigants on soil bacterial microorganisms and ginger metabolites. This study examined the effects of dazomet and chloropicrin on the control of ginger blast and their influence on ginger yield in Luoping County, Yunnan Province, China. The results showed that in 2022, the control effectiveness of dazomet and chloropicrin treatments on ginger blast was 84.33% and 94.67%, respectively. The corresponding yields were 50,154.40 kg/hm2 and 50,296.90 kg/hm2. In 2023, the control effectiveness of dazomet and chloropicrin treatments on ginger blast were 86.33% and 93.67%, respectively, and the yields were 65,115.83 kg/hm2 and 65,337.93 kg/hm2. In both years, the incidence of ginger blast in the control group reached nearly 100%, leading to the near extinction of the crop. Additionally, in 2023, 16S rRNA high-throughput sequencing and non-targeted metabolomics techniques were used to analyze the effects of the fumigants on soil bacterial microorganisms and the metabolites in ginger. The results showed that the diversity and richness of soil bacterial communities were lower than those in the control group at 0 and 120 days after treatment with two fumigants, but the relative abundances of beneficial bacteria such as Pseudomonas increased at 60 days, and the relative abundances of Actinobacteria, Gemmatimonadetes, and Bacillus increased at 120 days. The abundance of Firmicutes also increased after 120 days of chloropicrin treatment. The non-targeted metabolic LC–MS results showed that the production of phenols and terpenoids was upregulated after dazomet and chloropicrin treatments. The contents of amino acids and their derivatives were also upregulated. This upregulation of metabolites was beneficial to the flavor quality of ginger and enhanced its anti-inflammatory, anti-tumoral, and antioxidant effects. [ABSTRACT FROM AUTHOR]

Microplastics (MPs) are emerging persistent pollutants, and heavy metals are typical environmental pollutants, with their coexistence potentially compounding pollution and ecological risks. However, the interactive impacts and the relevant mechanisms of heavy metal and different types of MPs in plant-soil systems are still unclear. This study investigated the differential impacts of polyethylene MPs (PE MPs) and biodegradable polybutylene adipate MPs (PBAT MPs) on chromium (Cr) uptake in peanuts, focusing on plant performance and rhizosphere soil microenvironment. Compared with nondegradable PE-MPs, biodegradable PBAT MPs produced less significant influences on plant phytotoxicity, soil Cr bioavailability, and soil properties such as pH, CEC, DOC, and MBC, with the exception of MBN in Cr-contaminated soils. Compared to the control, soil pH and cation exchange capacity (CEC) decreased by MPs, while soil-soluble carbon (DOC), microbial biomass carbon, and nitrogen (MBC and MBN) increased by MPs. Compared to the control, soil-bioavailable Cr increased by 11.8–177.8% under PE MPs treatments, while increased by 5.1–156.9% under PBAT MPs treatments. The highest Cr content in shoots and roots was observed at 500.0 mg·kg−1 Cr level, which increased by 53.1% and 79.2% under 5% PE MPs treatments, respectively, as well as increased by 38.3% and 60.4% under 5% PBAT MPs treatments, respectively, compared with the control. The regression path analysis indicated that pH, MBC, MBN, and soil-bioavailable Cr played a vital role in the changes of soil properties and Cr uptake by peanuts induced by MPs. Soil bacterial community analysis revealed that Nocardioides, Proteobacteria, and Sphingomonas were reduced by the inhibition of MPs, which affected Cr uptake by peanuts. These results indicated that the peanut soil microenvironment was affected by PBAT and PE MPs, altering the Cr bioavailability and plant Cr uptake in Cr-contaminated soil. [ABSTRACT FROM AUTHOR]

Understanding the influence of afforestation on soil microorganisms, the major drivers of soil processes, is essential for maintaining soil health and sustainability. However, in a desert‐oasis ecotone, variations in the microbial community along shrub afforestation years remain unclear. We conducted a metagenomic analysis to study the temporal changes in microbial community structure in 0–100 cm soil following 3‐, 7‐, and 10‐year afforestation of Tamarix ramosissima Ledeb. on the southern edge of the Taklimakan Desert. Compared to the unreclaimed desert land, in 3‐year or 7‐year stands, soil organic carbon (SOC), nitrate nitrogen, available phosphorus and potassium (AK) contents significantly increased on average by 60%, 852%, 72%, and 299%, respectively. Soil archaeal and bacterial community composition were significantly affected by afforestation; their α‐diversity increased on average by 5.9% and 11.1%, respectively, after afforestation, showing a unimodal pattern along afforestation years. In contrast, fungal α‐diversity and community composition did not show significant variation over the afforestation period. The influence of AK outweighed that of SOC and other nutrients on soil microbial community composition. These findings suggest that T. ramosissima afforestation in the desert‐oasis ecotone has significant impacts on the community composition and α‐diversity of archaea and bacteria, but not fungi, by modifying soil physicochemical properties. This research provides valuable implications for soil management and microbial processes related to the afforestation of salt‐secreting shrubs. [ABSTRACT FROM AUTHOR]

Background and aims: Forest management practices affect soil carbon dynamics, particularly by changing the diversity of aboveground plant functional groups. However, we have a limited understanding of the underlying mechanisms for how plant management affects soil respiration in planted forest ecosystems. Methods: We conducted a 3-year manipulation experiment of plant functional groups that included understory removal, tree root trenching, and fertilization treatments in 2-year-old and 6-year-old Eucalyptus plantations in the subtropical region, to explore the responses of soil carbon emission and microbial community composition. Results: Soil respiration was significantly suppressed by understory removal (-38%), tree root trenching (-41%), and their interactions (-54%), but fertilization alone and in interactions had no significant effect. Soil bacterial and fungal diversity was negatively affected by understory removal and tree root trenching, respectively. Soil respiration and microbial diversity were lower in younger plantations. Reductions in soil carbon emissions were associated with losses of plant functional groups and soil microbial diversity, while increases in soil respiration were associated with soil physicochemical factors, soil temperature, and plantation age. Conclusions: The results indicated that understory removal and tree root trenching strongly affected soil respiration, while the power effects were regulated by soil microbial community and soil properties in contrast plantation ages. Our findings highlight that plant management is of great significance to the soil carbon emission processes in afforested plantations. [ABSTRACT FROM AUTHOR]

The use of fertilizers is mainly adopted in arid regions to improve the soil carbon (C) pool and crop productivity. However, the mechanisms underlying improvements in dryland wheat field soils related to microbial metabolic activity and community structure remain poorly understood. Therefore, a field experiment with four fertilization treatments and no fertilizer as the control (CK) was conducted for 10 years in a semi-arid region of China. The results revealed that the combined application of chemical and organic fertilizers (fermented chicken manure) clearly increased the levels of soil organic carbon (SOC), dissolved organic carbon (DOC), and light-fraction organic carbon (LFOC) by 13.54–16.72%, 6.96–9.01%, and 11.00–13.51%, respectively, compared to the sole use of chemical fertilizers (FP treatment). Moreover, the combined treatment not only enhanced the metabolic activity of microorganisms concerning carbon source utilization but also increased the diversity of the bacterial community. This caused noticeable changes in the composition of the bacterial community. A Mantel test analysis revealed that Bacteroidetes and Mortierellomycota significantly enhanced the metabolic activity associated with carbohydrate, amino acid, and carboxylic acid C sources. Actinobacteria, Bacteroidetes, and Mortierellomycota facilitated the accumulation of active C and particulate organic carbon (POC), whereas Mortierellomycota specifically promoted the accumulation of heavy-fraction organic carbon (HFOC), thereby collectively influencing the SOC content. The combined application of chemical and organic fertilizers increased the abundance of Bacteroidetes and Mortierellomycota. This enhancement improved the metabolic utilization of carbohydrates, amino acids, and carboxylic acids, resulting in alterations in the types and quantities of soil metabolites. Consequently, these alterations ultimately affect the composition and quantity of the SOC pool in arid agroecosystems. In conclusion, the combined application of balanced NPK fertilizers and organic fertilizers has a strong positive effect in improving soil microbial activity and the soil C pool. [ABSTRACT FROM AUTHOR]

The toxicity of cadmium (Cd) not only affects the growth and development of plants but also has an impact on human health. In this study, high-throughput sequencing and LC-MS were conducted to analyze the effect of CdCl2 treatment on the microbial community and soil metabolomics of rhizosphere soil in Rhododendron decorum subsp. diaprepes. The results showed that CdCl2 treatment reduced the quality of the rhizosphere soil by significantly decreasing the soil organic carbon (SOC) content, urease, and invertase activities, increasing the percentage of the exchangeable Cd fraction. CdCl2 treatment did not significantly change the Chao1 and Shannon indices of bacterial and fungal communities in the rhizosphere soil. R. decorum was more likely to recruit Cd-resistant bacteria (e.g., Proteobacteria, Chloroflexi) and increase the abundance of Cd-resistant fungi (e.g., Basidiomycota, Rozellomycota). Moreover, CdCl2 treatment decreased the content of secondary metabolites associated with plants' resistance to Cd. Rhizosphere soil urease, invertase activities, alkaline phosphatase (ALP), SOC, total potassium (TK), Cd, and nitrate nitrogen (NN) were the main drivers of the composition of rhizosphere bacterial and fungal communities. CdCl2 treatment weakened the relationships among bacterial/fungi, differential metabolites, and physicochemical properties in rhizosphere soil. [ABSTRACT FROM AUTHOR]

Tourist trampling is a serious disturbance affecting the soil structure and microbial community in forests. However, it is still unclear whether the response of soil microorganisms to trampling is attributed to the alterations in soil physical (soil bulk density and total porosity) or soil chemical (total nitrogen and soil organic carbon) properties. To determine the response and mechanism of soil microbial community composition to tourist trampling, we conducted a field experiment including four levels of trampling intensity (control, mild, moderate, and severe) at the Baotianman forest ecotourism area. With increasing trampling intensity, soil bulk density showed a substantially increasing pattern, whereas soil total porosity, total nitrogen, and soil organic carbon showed a decreasing trend. Compared to the insignificant change under mild trampling, moderate and severe trampling significantly decreased soil bacterial PLFAs (phospholipid fatty acids) by 46.6% and 57.5%, and fungal PLFAs by 36.3% and 61.5%, respectively. Severe trampling showed a significantly negative effect (−4.37%) on the proportion of soil bacterial PLFAs. Changes in soil bulk density and porosity induced by trampling, rather than total nitrogen and soil organic carbon, played a greater role in regulating soil microbial community composition. These findings suggest that soil microbial community composition and biomass are significantly influenced by the changes in soil texture and aeration conditions caused by tourist trampling. [ABSTRACT FROM AUTHOR]

Nitrogen application significantly affects microorganisms in agricultural ecosystems. However, it is still unclear how nitrogen application affects soil chemical properties and microbial communities in purple mudstone weathering products. In this study, a field soil column experiment was conducted in a typical purple soil area with four nitrogen fertilizer application gradients of 0 [CK], 280 [N1], 560 [N2], and 840 [N3] N kg ha−1. Nitrogen addition decreased the bacterial chao1 value and increased the bacterial evenness index. For both α- and β-diversity, the effect of nitrogen addition on bacteria was much greater than that on fungi. Nitrogen addition significantly increased the relative abundance of Proteobacteria, Gemmatimonadetes, Bacteroidetes, and Ascomycota and decreased the relative abundance of Actinobacteria, Cyanobacteria, and Basidiomycota. Both pH and TC are the most important soil chemical properties influencing the bacterial and fungal communities. With the increases in the nitrogen application rate, the co-occurrence network complexity increased and then decreased. In summary, nitrogen fertilizer application could significantly change the soil chemical properties, microbial community diversity, composition, and co-occurrence network of purple mudstone weathering products. Among them, the N2 treatment (560 N kg∙ha−1) can more effectively stimulate the soil nutrients, enhance microbial network complexity, and promote further weathering of purple mudstone. [ABSTRACT FROM AUTHOR]

Mulching is a common method increasing crop yield and achieving out-of-season production; nevertheless, their removal poses a significant environmental danger. In this scenario, the use of biodegradable plastic mulches comes up as a solution to increase the sustainability of this practice, as they can be tilled in soil without risk for the environment. In this context, it is important to study the microbial response to this practice, considering their direct involvement in plastic biodegradation. This study evaluated the biodegradation of three commercial mulch residues: one conventional non-biodegradable mulch versus two biodegradable ones (white and black compostable Mater-Bi mulches). The experiment was conducted under three incubation temperatures (room temperature 20–25 °C, 30 °C, and 45 °C) for a 6-month trial using fallow agricultural soil. Soil without plastic mulch residues was used as a control. White mater-bi biodegradable mulch residues showed higher degradation rates up to 88.90% at 30 °C, and up to 69.15% at room temperature. Furthermore, incubation at 45 °C determines the absence of degradation for all types of mulch considered. Moreover, bacterial alpha diversity was primarily influenced by plastic type and temperature, while fungal populations were mainly affected by temperature. Beta diversity was impacted by all experimental variables. Predicted functional genes crucial for degrading complex substrates, including those encoding hydrolases, cutinases, cellobiosidases, and lipases, were derived from 16S rRNA gene sequencing data. Cluster analysis based on predicted enzyme-encoding gene abundance revealed two clusters, mainly linked to sampling time. Finally, core microbiome analysis identified dominant bacterial and fungal taxa in various soil-plastic ecosystems during degradation, pinpointing species potentially involved in plastic breakdown. The present study allows an assessment of how different temperatures affect the degradation of mulch residues in soil, providing important insights for different climatic growing zones. It also fills a gap in the literature by directly comparing the effects of biodegradable and polyethylene mulches on soil microbial communities. [ABSTRACT FROM AUTHOR]

The application of straw-degrading microbes (SDMs) with straw returned to the field is an effective measure to improve soil quality, increase yield, and maintain soil microorganisms. However, the utilization of SDMs in winter in north China is limited by the poor effects at low temperatures. This study investigated the effects of a new compound SDM, including a novel low-temperature fungus Pseudogymnoascus sp. SDF-LT, on winter wheat yield, soil improvement, and soil microbial diversity. A 2-year field experiment was conducted in two different soil textures of wheat–maize rotation fields with full corn straw return and application of SDMs at an amount of 67.5  kg hm−2 . After 2  years of continuous application of SDMs, the winter wheat yield increased significantly, reaching 9419.40  kg hm−2 in Ningjin (NJSDM) and 9107.25  kg hm−2 in Mancheng (MCSDM). The soil properties have been significantly improved compared with the single straw return group, especially the sandy loam soil, whose quality is relatively low. The analysis of soil microbial diversity showed that SDMs significantly reduced the Chao1, Shannon, Simpson, and observed species of the sandy loam soil in the MCSDM group. The Simpson and Shannon indexes of fungi diversity in the two experimental sites were significantly increased by SDMs. The negative correlation of fungi increased from 47.1 to 48.85% in the SDM groups. The soil-dominant microbes changed in the SDM groups, in which the interactions between microbes were enhanced. These results suggested that the SDMs changed the the soil microbial community structure and its diversity and complexity, which is beneficial for crop growth. Our study provided sufficient evidence for the utilization of low-temperature SDMs with straw return in cold winter, which plays a role in soil improvement, especially for low-quality soils, to increase crop yield. [ABSTRACT FROM AUTHOR]

Microbial community in wetland soils is crucial for maintaining the stability of the wetland ecosystem. Nevertheless, the soil microbial community is sensitive to the environmental stress in wetlands. This leads to the possibility that the microbial community structure may be influenced by environmental factors. To gain an in-depth understanding in the response of microbial community structure in wetland soils under different environmental factors, this review comprehensively explores the factors of natural conditions (e.g., different types of wetland, soil physical and chemical properties, climate conditions), biological factors (e.g., plants, soil animals), and human activities (e.g., land use, soil pollution, grazing). Those factors can affect microbial community structure and activities in wetland soils through different ways such as (i) affecting the wetland soil environment in which soil microorganisms survived in, (ii) influencing the available nutrients (e.g., carbon, nitrogen) required for microbial activity, and (iii) the direct effects on soil microorganisms (toxicity or promotion of resistant species). This review can provide references for the conservation of microbial diversity in wetland soils, the maintenance of wetland ecosystem balance, and the wetland ecological restoration. [ABSTRACT FROM AUTHOR]

One of the key goals of ecology is to understand how communities are assembled. The species co‐existence theory suggests that community β‐diversity is influenced by species pool and community assembly processes, such as environmental filtering, dispersal events, ecological drift and biotic interactions. However, it remains unclear whether there are similar β‐diversity patterns among different soil microbial groups and whether all these mechanisms play significant roles in mediating β‐diversity patterns. By conducting a broad survey across Chinese deserts, we aimed to address these questions by investing biological soil crusts (biocrusts). Through amplicon‐sequencing, we acquired β‐diversity data for multiple microbial groups, that is, soil total bacteria, diazotrophs, phoD‐harbouring taxa, and fungi. Our results have shown varying distance decay rates of β‐diversity across microbial groups, with soil total bacteria showing a weaker distance‐decay relationship than other groups. The impact of the species pool on community β‐diversity varied across microbial groups, with soil total bacteria and diazotrophs being significantly influenced. While the contributions of specific assembly processes to community β‐diversity patterns varied among different microbial groups, significant effects of local community assembly processes on β‐diversity patterns were consistently observed across all groups. Homogenous selection and dispersal limitation emerged as crucial processes for all groups. Precipitation and soil C:P were the key factors mediating β‐diversity for all groups. This study has substantially advanced our understanding of how the communities of multiple microbial groups are structured in desert biocrust systems. [ABSTRACT FROM AUTHOR]

Fertiliser amendment is the most direct method for improving soil properties of ecologically vulnerable areas (e.g. desertification soil area), and then, understanding the response of microbial community activities and growth to different fertilisation treatments is of great significance in sandy soil restoration. Here, a field experiment with different fertiliser treatments in typical alkaline–sandy soil was conducted. In this study, the difference of physicochemical property, microbial communities and functions in different treatments of no fertiliser (CK), (ii) fly ash chemical fertilisers (CF), (iii) humic straw organic fertiliser (OF), (iv) functional microbial fertiliser (FMF), (v) sulphate-reducing bacterial (SRB) fertiliser (MF) and (vi) humic straw organic fertiliser + functional microbial fertiliser + SRB fertiliser (CMF) were evaluated. The result showed that the contents of soil total organic carbon, NO3-N, P and K in the FMF were highest. The abundance of keystone taxa (Gemmatimonadetes and Thaumarchaeota) increased significantly in the treatments of microbial fertiliser. Microbial fertiliser boosted genes for aerobic nitrite oxidation, nitrogen fixation, ammonia oxidation and aromatic compound degradation. The number of methylotrophy and dark sulphur oxidation genes was reduced. The bbove results indicated that the treatments with the inoculation of functional microbes are better than the others for the restoration of alkaline–sandy soil. [ABSTRACT FROM AUTHOR]

Atmospheric nitrogen (N) deposition in forests can affect soil microbial growth and turnover directly through increasing N availability and indirectly through altering plant‐derived carbon (C) availability for microbes. This impacts microbial residues (i.e., amino sugars), a major component of soil organic carbon (SOC). Previous studies in forests have so far focused on the impact of understory N addition on microbes and microbial residues, but the effect of N deposition through plant canopy, the major pathway of N deposition in nature, has not been explicitly explored. In this study, we investigated whether and how the quantities (25 and 50 kg N ha−1 year−1) and modes (canopy and understory) of N addition affect soil microbial residues in a temperate broadleaf forest under 10‐year N additions. Our results showed that N addition enhanced the concentrations of soil amino sugars and microbial residual C (MRC) but not their relative contributions to SOC, and this effect on amino sugars and MRC was closely related to the quantities and modes of N addition. In the topsoil, high‐N addition significantly increased the concentrations of amino sugars and MRC, regardless of the N addition mode. In the subsoil, only canopy N addition positively affected amino sugars and MRC, implying that the indirect pathway via plants plays a more important role. Neither canopy nor understory N addition significantly affected soil microbial biomass (as represented by phospholipid fatty acids), community composition and activity, suggesting that enhanced microbial residues under N deposition likely stem from increased microbial turnover. These findings indicate that understory N addition may underestimate the impact of N deposition on microbial residues and SOC, highlighting that the processes of canopy N uptake and plant‐derived C availability to microbes should be taken into consideration when predicting the impact of N deposition on the C sequestration in temperate forests. [ABSTRACT FROM AUTHOR]

Predicting how biological communities assemble in restored ecosystems can assist in conservation efforts, but most research has focused on plants, with relatively little attention paid to soil microbial organisms that plants interact with. Arbuscular mycorrhizal (AM) fungi are an ecologically significant functional group of soil microbes that form mutualistic symbioses with plants and could therefore respond positively to plant community restoration. To evaluate the effects of plant community restoration on AM fungi, we compared AM fungal abundance, species richness, and community composition of five annually cultivated, conventionally managed agricultural fields with paired adjacent retired agricultural fields that had undergone prairie restoration 5–9 years prior to sampling. We hypothesized that restoration stimulates AM fungal abundance and species richness, particularly for disturbance‐sensitive taxa, and that gains of new taxa would not displace AM fungal species present prior to restoration due to legacy effects. AM fungal abundance was quantified by measuring soil spore density and root colonization. AM fungal species richness and community composition were determined in soils and plant roots using DNA high‐throughput sequencing. Soil spore density was 2.3 times higher in restored prairies compared to agricultural fields, but AM fungal root colonization did not differ between land use types. AM fungal species richness was 2.7 and 1.4 times higher in restored prairies versus agricultural fields for soil and roots, respectively. The abundance of Glomeraceae, a disturbance‐tolerant family, decreased by 25% from agricultural to restored prairie soils but did not differ in plant roots. The abundance of Claroideoglomeraceae and Diversisporaceae, both disturbance‐sensitive families, was 4.6 and 3.2 times higher in restored prairie versus agricultural soils, respectively. Species turnover was higher than expected relative to a null model, indicating that AM fungal species were gained by replacement. Our findings demonstrate that restoration can promote a relatively rapid increase in the abundance and diversity of soil microbial communities that had been degraded by decades of intensive land use, and community compositional change can be predicted by the disturbance tolerance of soil microbial taxonomic and functional groups. [ABSTRACT FROM AUTHOR]

In recent years, the rise in greenhouse gas emissions from agriculture has worsened climate change. Efficiently utilizing agricultural waste can significantly mitigate these effects. This study investigated the ecological benefits of returning peach branch waste to fields (RPBF) through three innovative strategies: (1) application of peach branch organic fertilizer (OF), (2) mushroom cultivation using peach branches as a substrate (MC), and (3) surface mulching with peach branches (SM). Conducted within a peach orchard ecosystem, our research aimed to assess these resource utilization strategies' effects on soil properties, microbial community, and carbon cycle, thereby contributing to sustainable agricultural practices. Our findings indicated that all RPBF treatments enhance soil nutrient content, enriching beneficial microorganisms, such as Humicola, Rhizobiales, and Bacillus. Moreover, soil AP and AK were observed to regulate the soil carbon cycle by altering the compositions and functions of microbial communities. Notably, OF and MC treatments were found to boost autotrophic microorganism abundance, thereby augmenting the potential for soil carbon sequestration and emission reduction. Interestingly, in peach orchard soil, fungal communities were found to contribute more greatly to SOC content than bacterial communities. However, SM treatment resulted in an increase in the presence of bacterial communities, thereby enhancing carbon emissions. Overall, this study illustrated the fundamental pathways by which RPBF treatment affects the soil carbon cycle, providing novel insights into the rational resource utilization of peach branch waste and the advancement of ecological agriculture. [ABSTRACT FROM AUTHOR]

The cultivation of Cunninghamia lanceolata (Lamb.) Hook. (Chinese fir) plays a crucial role in enhancing ecological security through water resource preservation and carbon sequestration in China. The biotic and abiotic environmental conditions vary across different stages of plantation, thereby influencing soil nutrient levels and microbial dynamics. However, the interconnection between the soil nutrient cycle and microbial communities within Chinese fir plantations throughout their entire life cycle remains inadequately understood. In this study, conducted across various management stages of Chinese fir plantations in China (including the juvenile stage, first thinning stage, second thinning stage, mature stage, and over-mature stage), we examined the associations among soil organic carbon, soil physicochemical properties, soil enzyme activities, and soil microbial dynamics. Our results revealed that forest management practices significantly modify soil physicochemical properties and enzyme activities across all management stages. Specifically, the concentrations of total soil carbon, soil organic carbon, and soil microbial biomass carbon were notably higher in the over-mature stage compared to other management stages. At the genus level, the five highest contributors belonged to Subgroup2, AD3, Xanthobacteraceae, Elsterales, and Acidobacteriales for the bacterial community. For the fungal community at the genus level, the five highest contributors belonged to Ascomycota, Serendipita, Saitozyma, Mortieralla, and Venturiales. Moreover, anthropogenic thinning activities during the management phase substantially altered both stand and soil environments, as well as the structural characteristics of soil microbial communities. Soil cellulase, soil electrical conductivity (EC), and soil available phosphorus (AP) emerged as key factors influencing the relative abundance of major fungal communities, whereas soil total nitrogen, EC, and AP were identified as critical factors affecting the relative abundance of major bacterial phyla. More microbiological groups increased significantly in the juvenile stage and over-mature stage. Our findings elucidate the intricate relationships between the soil nutrient cycle and soil microbiological dynamics across various forest management stages within Chinese fir plantations. [ABSTRACT FROM AUTHOR]

Synergic effects between climate change and invasive species may alter soil microbial diversity and functioning, as well as cause major shifts in physicochemical properties. Moreover, some of these ecological impacts may manifest even after the removal of the invasive species. We have conducted a field experiment to assess such effects on soil microbial communities (fungi and bacteria) and physicochemical properties seven months after the removal of Carpobrotus edulis (L.), an invasive plant of coastal dune ecosystems. C. edulis grew on the experimental plots for 14 months under current ("invasive species treatment") and increased warming and drought conditions ("combined treatment"). Then, all plant parts (above and belowground biomass) were removed with a non-aggressive eradication method and soil samples were collected seven months later in the experimental and control plots (no invasive species and current climatic conditions). We predicted a general compositional shift in microbial communities in response to the presence of the invasive species. Moreover, given that water is the most limiting factor in this type of ecosystem, we also predicted a more pronounced compositional shift in the treatment combining invader presence and climate change. While species richness was similar amongst treatments, we observed some taxonomic and functional variation in soil microbial communities. Notably, fungal and bacterial communities exhibited contrasting responses. The species composition of bacteria differed significantly between the "invasive species" and "control" treatments, while, in the case of fungi, the most substantial difference occurred between the "invasive species" treatment and the combined treatment of "invasive species and climate change". Some chemical properties, such as carbon and nitrogen content or pH, strongly differed amongst treatments, with the "invasive species" showing a different response compared to the other two treatments. Overall, our study suggests smaller short-term effects on the microbial community compared to soil chemical properties. Furthermore and contrary to our initial expectations, the potential impact on the soil microbiome seemed to be weaker in the face of rising temperatures and drought conditions predicted by climate change. This outcome highlights the remarkable complexity of the impact of invasive species and climate change on belowground microbial communities. [ABSTRACT FROM AUTHOR]

[Objective]The aims of this study are to understand the soil microbial communities in different protection forests in coastal sand dune ecosystem, and to provide theoretical basis for sustainable management of the protection forests. [Methods]A study was conducted to compare the effects of different forests on soil microbial composition and the relationship between soil microorganism and environmental factors by phospholipid fatty acid method(PLFA)in 5 forests including secondary forest, and plantations of Casuarina equisetifolia, Pinus elliottii, Acacia crassicarpa and Eucalyptus urophylla × E. grandis. [Results](1)18 kinds of PLFA biomarkers were detected in the soils of different protection forests in coastal sand dune ecosystem, which were most in Eucalyptus urophylla × E. grandis plantation and secondary forest, and least in Pinus elliottii and Acacia crassicarpa plantations. (2)The contents of total PLFA, gram-positive bacteria and gram-negative bacteria were all higher in Eucalyptus urophylla × E. grandis plantation and secondary forest, and lower in Acacia crassicarpa and Casuarina equisetifolia plantations. In addition, the fungi content was significantly higher in Eucalyptus urophylla ×E. grandis plantation than in other forest types, the content of soil fungi in Eucalyptus urophylla × E. grandis plantation was the highest, and that of arbuscular mycorrhizal in secondary forest was the highest, no significant difference was found among other protection forests. (3)The soil microbial diversity and evenness of the secondary forest were higher than those of the four plantations. (4)The soil pH, fine root carbon and nitrogen contents had the greatest impact on soil microbial community, followed by soil total nitrogen and nitrate nitrogen contents, litter lignin/nitrogen and fine root carbon nitrogen ratio. [Conclusion]The effects of protection forests on soil microbial community are significantly different. The introduction of Eucalyptus urophylla XE. grandis and native trees in the coastal Casuarina equisetifolia protection forest can increase soil microbial diversity and improve forest ecological functions [ABSTRACT FROM AUTHOR]

An increasing number of studies of above‐belowground interactions provide a fundamental basis for our understanding of the coexistence between plant and soil communities. However, we lack empirical evidence to understand the directionality of drivers of plant and soil communities under natural conditions: 'Are soil microorganisms driving plant community functioning or do they adapt to the plant community?' In a field experiment in an early successional dune ecosystem, we manipulated soil communities by adding living (i.e., natural microbial communities) and sterile soil inocula, originating from natural ecosystems, and examined the annual responses of soil and plant communities. The experimental manipulations had a persistent effect on the soil microbial community with divergent impacts for living and sterile soil inocula. The plant community was also affected by soil inoculation, but there was no difference between the impacts of living and sterile inocula. We also observed an increasing convergence of plant and soil microbial composition over time. Our results show that alterations in soil abiotic and biotic conditions have long‐term effects on the composition of both plant and soil microbial communities. Importantly, our study provides direct evidence that soil microorganisms are not "drivers" of plant community dynamics. We found that soil fungi and bacteria manifest different community assemblies in response to treatments. Soil fungi act as "passengers," that is, soil microorganisms reflect plant community dynamics but do not alter it, whereas soil bacteria are neither "drivers" nor "passengers" of plant community dynamics in early successional ecosystems. These results are critical for understanding the community assembly of plant and soil microbial communities under natural conditions and are directly relevant for ecosystem management and restoration. [ABSTRACT FROM AUTHOR]

Drought can affect ecosystem functioning by altering plant–soil interactions, posing a significant threat to vulnerable ecosystems like heathlands. In heathlands, ongoing nitrogen deposition increases the dominance of fast‐growing grasses over the slow‐growing shrub Calluna vulgaris. These changes above‐ground can influence soil dynamics and heathlands' responses to drought. Here, we assessed whether the legacy effects of drought on heathland soils depended on mowing times as a management practice commonly used to regenerate Calluna and decrease the abundance of fast‐growing grasses.Using a long‐term field experiment, we investigated if soil response to drought differed under Calluna and grasses, as well as under Calluna plants of different growth stages through different mowing times. We hypothesized that drought would decrease soil C and nutrient pools underneath grasses and younger Calluna plants through its impact on soil microbial communities.Our results show that long‐term drought decreased soil C but only underneath grasses and old Calluna, while under young Calluna, soil C increased under drought when compared to control conditions. Bacterial and fungal community composition differed between drought and control and were affected by the growth stage of Calluna but not by plant growth strategies. Furthermore, drought and Calluna growth stage‐induced changes in bacterial communities directly affected total soil C and indirectly by reducing microbial C, which was positively related to total soil C.Synthesis and applications. Understanding ecosystem response to drought is crucial for maintaining biodiversity and mitigating climate change feedbacks. Heathlands are threatened by high nitrogen deposition, a lack of management and an increasing frequency of drought. Our results emphasize the importance of frequent mowing (decadal) as a management practice that promotes a younger and more Calluna‐dominated plant community for reducing soil C losses under future climate change‐induced drought conditions. The active management of heathlands is essential not only for keeping above‐ground vegetation dynamics, but also for maintaining below‐ground soil nutrient and carbon pools. [ABSTRACT FROM AUTHOR]

Nitrogen (N) fertilizers in agriculture suffer losses by volatilization of N to the air, surface runoff and leaching into the soil, resulting in low N use efficiency (NUE) (50%) and raising severe environmental pollutions. Controlledrelease nitrogen fertilizers (CRNFs) can control the release of N nutrients to NUE in crop production. Different methods were used to develop new CRNFs. However, different CRNF technologies are still underdeveloped due to inadequate controlling on N releasing time and/or unsustainable diffusion. The study on the influences of CRNF processing parameters on microbial conditions are lacking when the CRNFs composed of various bio-ingredients such as biochar, composts, and biowaste. The complexity of processing methods, material biodegradability, and other physical properties make current CRNFs of questionable value in agricultural production. This research aims to develop a novel biochar-compost-based controlled-release urea fertilizer (BCRUF) to preserve microbial properties carried by the compost. The BCRUF was synthesized by pelletizing the 50:50 (dry, wt/wt) mixture of biochar and compost. BCRUF was loaded with urea and then spray-coated with polylactic acid (PLA). The releasing time of two types of BCRUFs, coated and uncoated with PLA, for 80% of N release in water was up to 6 h at three different temperatures (4, 23, and 40 °C), compared to conventional urea fertilizer and commercial environmentally smart N (ESN) fertilizer. The releasing time of coated BCRUF for 80% N release in soil was up to 192 h (8 days). Fourier-transform infrared spectroscopy (FTIR) analysis revealed that no new functional groups were found in the release solution, indicating no new chemical hazards generated. The differential scanning calorimetry (DSC) tests also verified that its thermal stability could be up to 160 °C. The microbe populations in the BCRUF pellets were reduced after the pelleting and drying processes in BCRUF fabrication, but a few bacteria can endure in the air-drying process. BCRUF pellets soaked in water for 4 days retained some bacteria. The BCRUF showed very promising characteristics to improve NUE and sustainability in agricultural production. [ABSTRACT FROM AUTHOR]

Heavy-metal contamination in agricultural soil, particularly of cadmium (Cd), poses serious threats to soil biodiversity, rice production, and food safety. Soil microbes improve soil fertility by regulating soil organic matter production, plant nutrient accumulation, and pollutant transformation. Addressing the impact of Cd toxicity on soil fungal community composition, soil health, and rice yield is urgently required for sustainable rice production. Vermicompost (VC) is an organic fertilizer that alleviates the toxic effects of Cd on soil microbial biodiversity and functionality and improves crop productivity sustainably. In the present study, we examined the effects of different doses of VC (i.e., 0, 3, and 6 tons ha−1) and levels of Cd stress (i.e., 0 and 25 mg Cd kg−1) on soil biochemical attributes, soil fungal community composition, and fragrant-rice grain yield. The results showed that the Cd toxicity significantly reduced soil fertility, eukaryotic microbial community composition and rice grain yield. However, the VC addition alleviated the Cd toxicity and significantly improved the soil fungal community; additionally, it enhanced the relative abundance of Ascomycota, Chlorophyta, Ciliophora, Basidiomycota, and Glomeromycta in Cd-contaminated soils. Moreover, the VC addition enhanced the soil's chemical attributes, including soil pH, soil organic carbon (SOC), available nitrogen (AN), total nitrogen (TN), and microbial biomass C and N, compared to non-VC treated soil under Cd toxicity conditions. Similarly, the VC application significantly increased rice grain yield and decreased the Cd uptake in rice. One possible explanation for the reduced Cd uptake in plants is that VC amendments influence the soil's biological properties, which ultimately reduces soil Cd bioavailability and subsequently influences the Cd uptake and accumulation in rice plants. RDA analysis determined that the leading fungal species were highly related to soil environmental attributes and microbial biomass C and N production. However, the relative abundance levels of Ascomycota, Basidiomycota, and Glomeromycta were strongly associated with soil environmental variables. Thus, the outcomes of this study reveal that the use of VC in Cd-contaminated soils could be useful for sustainable rice production and safe utilization of Cd-polluted soil. [ABSTRACT FROM AUTHOR]

With mounting demand for high-quality agricultural products and the relentless exploitation of arable land resources, finding sustainable ways to safely cultivate food crops is becoming ever more important. Here, we investigated the effects of the integrated cropping technique "straw return + intercropping" on the soil aggregates as well as the microbial biomass carbon (MBC) content, enzyme activities and microbial diversity in soils of maize and soybean crops. Our results show that in comparison to straw removal and monoculture, straw return and intercropping increase the rhizosphere's MBC content (59.10%) of soil, along with urease (47.82%), sucrase (57.14%), catalase (16.14%) and acid phosphatase (40.66%) activities as well as the microbial diversity under maize and soybean. Under the same straw treatment, the yield of maize when intercropped surpassed that when grown in monoculture, with the land equivalent ratio of the intercropping treatment under straw return being highest. Overall, the intercropping of maize and soybean is beneficial for the healthy development of sustainable agriculture in the black soil region of northeast China, especially when combined with straw return to fields. [ABSTRACT FROM AUTHOR]

BackgroundTobacco (Nicotiana tabacum L.) is an important economic crop, and the use of plant growth-promoting bacteria (PGPB) to enhance its growth and suppress soil-borne diseases has garnered considerable research interest. However, the potential of yeast to augment the growth-promoting and disease-suppressing effects of PGPB on tobacco remains unclear.MethodsThis study investigated the effects of Pichia sp. microbial fertilizer (J1), PGPB-Klebsiella oxytoca microbial fertilizer (ZS4), and their composite fertilizer (JZ) on tobacco growth indexes, soil properties, and soil microbial community through a pot experiment. Additionally, field experiments were conducted to further assess the efficacy of the composite microbial fertilizer on tobacco growth and the incidences of soil-borne diseases, including tobacco bacterial wilt (TBW) and tobacco black shank (TBS).Results and discussionsIn the pot experiment, application of the microbial fertilizers significantly enhanced soil organic matter (OM), total nitrogen (TN), total phosphorus (TP), total potassium (TK), available phosphorus (AP), and available potassium (AK) levels. Compared to the control group (CK), J1, ZS4, and JZ microbial fertilizers significantly promoted tobacco growth, and the composite microbial fertilizers demonstrated superior to the individual microbial fertilizers. We found that the application of microbial fertilizer led to significant alterations in the structure and composition of the bacterial and fungal communities based on the high-throughput sequencing of 16S rRNA and internal transcribed spacer (ITS) regions. The bacterial and fungal diversity indexes showed a decreasing trend. Key microorganisms such as Sphingomonas, Kitasatospora, Nitrosospira, Mortierella, and Trichoderma were identified as influential in regulating soil physicochemical parameters to enhance tobacco growth. Functional prediction further demonstrated a significant increase in the relative abundances of certain enzymes, including Alkaline phosphatase, 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase), and Peroxidase, as well as antimicrobial substances like Tetracycline, Isoquinoline alkaloid, and Phenylpropanoids, following inoculation with the fertilizer. Besides, field experiments revealed that the JZ fertilizer significantly promoted tobacco growth and reduced the incidence of TBW and TBS, indicating its potential for further application in tobacco cultivation.

ABSTRACT About 35% of grassland in Sanjiangyuan area of China has degenerated into black‐soil mountain. Artificial grassland is considered to be an effective measure to alleviate the severely degraded grassland in the alpine region of the three rivers and has been widely used. However, the pattern, potential function, and changes of carbon and nitrogen contents of soil microorganisms in degraded grassland in Heimushan by planting artificial grassland are still unclear. In this study, mixed‐sown artificial alpine grassland (AG) was the focus of our study, whereas degraded black‐soil mountain grassland (BG) and natural alpine grassland (NG) served as controls. Illumina 16S and ITS gene sequence analyses were used to analyze the community structure of the soil bacteria and fungi. The functional groups of NG, AG, and BG were predicted using the FAPROTAX and FUNGuild databases. In addition, the levels of soil carbon, nitrogen, and soil enzyme activities were evaluated. The results indicated a significant increase in the aboveground biomass of BG due to the planting artificial grassland. Moreover, the contents of total carbon (TC), total nitrogen (TN), ammonium nitrogen (NH4+−N), microbial biomass carbon (MBC), microbial biomass nitrogen (MBN), and leucine aminopeptidase (LAP) increased in the soil. Planting artificial grasslands changed the composition of bacterial and fungal communities. Among these, the bacterial community was more sensitive to planting artificial grasslands. The relative abundance of bacterial functional groups involved in carbon and nitrogen cycling changed significantly, suggesting that bacteria may play a role in regulating nutrient cycling during artificial grassland planting. Soil TC, TN, LAP, and NH4+−N affected the microbial community structure related to carbon and nitrogen. NH4+−N and β‐1,4‐glucosidase were carbon and nitrogen factors, respectively, that affected functional changes in fungi. These results indicate that planting artificial grasslands can effectively enhance the productivity of degraded black‐soil mountain and regulate soil microbial communities and soil physical and chemical properties.

IntroductionPlastic film mulching has been widely used to enhance soil hydrothermal conditions and increase crop yields in cool, semi-arid areas. However, its impact on soil microbial carbon metabolic activity and functional diversity during plant growth remains unclear despite their important roles in nutrient cycling and soil quality evaluation.MethodsThis study used the Biolog EcoPlate technique to investigate the dynamics and driving factors of soil microbial carbon metabolic activity and functional diversity at different maize growth stages following plastic film mulching.Results and discussionThe results revealed that film mulching significantly increased microbial carbon metabolic activities [represented by average well color development (AWCD)] by 300% at the seedling stage and by 26.8% at maturity but decreased it by 47.4% at the flowering stage compared to the control (without mulching). A similar trend was observed for the microbial functional diversity index. Redundancy analysis identified soil moisture (SM), soil temperature (ST), dissolved organic carbon (DOC), microbial biomass carbon (MBC), and bacteria amounts as the primary factors influencing changes in soil microbial carbon source utilization. The mulch treatment significantly increased SM at all growth stages, while its warming effect disappeared at the flowering stage. Soil DOC, MBC, and bacterial populations were notably higher under mulching at the seedling and maturity stages but lower at the flowering stage. Pearson correlation analysis showed that changes in SM, ST, DOC, MBC, and bacterial populations positively correlated with the utilization of all carbon source classes, AWCD, and functional diversity indexes after film mulching. Furthermore, maize grain yield and water use efficiency increased by 142 and 129%, respectively, following film mulching. In conclusion, plastic film mulching enhanced soil microbial carbon metabolic activity and functional diversity at the seedling and maturity stages, improving crop yields in cool, semi-arid areas. Furthermore, the decrease in soil carbon metabolic capacity at flowering stage highlights that supplementing soil carbon sources should be considered after continuous film mulching to sustain or enhance farmland productivity and soil quality.

Subtropical Moso bamboo (Phyllostachys edulis) forests have become hot spots for nitrogen (N) deposition in China. However, the effect of long-term N deposition on the structure of soil microbial communities in different horizons of these forests remains unclear. To investigate the influence of extended N deposition on soil bacteria and fungi, a simulated N deposition field study was conducted in Fujian Province with four N deposition levels (0, 20, 40 and 80 kg N hm−2 a−1). The absolute abundances, diversity, community structure, and potential functions of soil bacteria and fungi were investigated after 10 years of simulated N deposition. The results indicated that there was no significant effect of N deposition on the abundance or diversity of soil microbes in either the organic or mineral horizons of Moso bamboo forests. However, under rates of 40 and 80 kg N hm−2 a−1, long-term N deposition altered the structure of the soil bacterial community in the organic horizon. Specifically, there was a 27.75∼36.40 % increase in the relative abundance of Actinobacteria, while that of Acidobacteria decreased by 24.40∼27.52 %. Redundancy analysis (RDA) demonstrated that soil total carbon (TC) was the key variable influencing the bacterial community structure in the organic horizon. Analysis of potential microbial functions showed that in the organic horizon, the rates of chemoheterotrophy significantly decreased under 80 kg N hm−2 a−1. However, N deposition did not noticeably impact the fungal community structure in either soil horizon. Our study suggested that under 10 years of N deposition, only the bacterial community composition and function in the organic horizon was affected, indicating that soil bacteria are more sensitive to N deposition than fungi in subtropical Moso bamboo forests. Therefore, further research is necessary to fully understand the impact of N deposition on fungal community composition in the soil organic horizon and on the microbial community in the mineral horizon of subtropical bamboo forests. This study provides valuable insights for informing future environmental management and conservation strategies.

Residues of herbicides with the extensive applications may impact the soil ecosystem and ultimately threaten agricultural sustainability. However, the effects of long-term herbicide residues on soil multifunctionality and the soil microbial community remain poorly understood. Here, we evaluated relationships between soil multifunctionality and soil microbial communities with residual herbicide concentrations by surveying and analyzing 62 black soil samples collected from an agricultural area in northeastern China. Total residual herbicide concentrations varied from 35 to 568 μg/kg in the soil samples. The response of soil multifunctionality to increasing residual herbicide concentrations exhibited an inverted U-shaped relationship with a peak at approximately 310 μg/kg, with net mineralized organic nitrogen (Nm) and total nitrogen (TN) exhibiting the same trend. Microbial community richness was significantly lower in soil samples with high residual herbicide concentrations (> 310 μg/kg, HG) compared to low residual herbicide concentrations (< 310 μg/kg, LG). In addition, the relative abundances of specific keystone microbial genera differed significantly between LG and HG: norank_f_Acetobacteraceae, norank_f_Caldilineaceae, Candidatus_Alysiosphaera, and Gonytrichum. The relative abundances of these genera were also significantly correlated with soil multifunctionality. Structural equation models (SEMs) further showed that herbicide residues influenced soil multifunctionality by affecting these specific keystone genera. Our study demonstrates that long-term herbicide residues significantly impact the multifunctionality of agricultural black soil, where low concentrations stimulate while high concentrations inhibit, underscoring the need for reasonable application of herbicides to maintain soil ecosystem health.

Abstract Background Hundreds of millions of tons coal fly ash are produced annually to support economic development and industrial production. However, directly applying coal fly ash to agricultural production can decrease the land productivity and pose a threat to the ecosystem due to the poor physicochemical properties and seriously heavy metal pollution. Methods In this study, a field experiment to investigate the effects of coal fly ash as a soil amendment was conducted in Hebei province, China. The coal fly ash (CFA) soil field was mixed with the carrier soil (CS, without containing coal fly ash) at different rates (0–40% mass content) in the 0–20 cm layer of top soil and then mixed with a rotovator. The soil was then amended with 0.45–1.80 kg·m− 2 of G1 soil amendment for planting corn. Purpose The purpose of this study is to investigate the response mechanism of soil microbial community activities, and soil physicochemical properties to soil amendment and carrier soil in coal fly ash soil. Key results The study found that the G1 amendment, which consisted of humic acid, polyacrylamide, zeolite powder, and FeSO4·7H2O, improved the soil chemical properties and physical structure by increasing soil bulk density and macroaggregates. The highest corn yield was observed in B5 (20% CS and 1.3500 kg·m− 2 G1). Meanwhile, the abundance of microorganisms that facilitate the circulation of soil nutrients such as Acidobacteria (77.05%), Sphingomonas (25.60%), Nitrospira (20.78%), Streptomyces (11.32%), and Gaiella (10.20%) was increased. Conclusions Overall, our results indicate that the use of coal fly ash soil as a amendment can enhance soil sustainability by improving soil microbial functions. These findings provide a reference for the development and application of coal fly ash soil amendments.

Abstract Combined straw and straw-derived biochar input is commonly applied by farmland management in low-fertility soils. Although straw return increases soil organic matter (SOM) contents, it also primes SOM mineralization. The mechanisms by which active microorganisms mineralize SOM and the underlying factors remain unclear for such soils. To address these issues, paddy soil was amended with 13C-labeled straw, with and without biochar (BC) or ferrihydrite (Fh), and incubated for 70 days under flooded conditions. Compound-specific 13C analysis of phospholipid fatty acids (13C-PLFAs) allowed us to identify active microbial communities utilizing the 13C-labeled straw and specific groups involved in SOM mineralization. Cumulative SOM mineralization increased by 61% and 27% in soils amended with Straw + BC and Straw + Fh + BC, respectively, compared to that with straw only. The total PLFA content was independent of the straw and biochar input. However, 13C-PLFAs contents increased by 35–82% after biochar addition, reflecting accelerated microbial turnover. Compared to that in soils without biochar addition, those with biochar had an altered microbial community composition-increased amounts of 13C-labeled gram-positive bacteria (13C-Gram +) and fungi, which were the main active microorganisms mineralizing SOM. Microbial reproduction and growth were susceptible to nutrient availability. 13C-Gram + and 13C-fungi increased with Olsen P but decreased with dissolved organic carbon and $${\text{NO}}_{3}^{ - }$$ NO 3 - contents. In conclusion, biochar acts as an electron shuttle, stimulates iron reduction, and releases organic carbon from soil minerals, which in turn increases SOM mineralization. Gram + and fungi were involved in straw decomposition in response to biochar application and responsible for SOM mineralization. Graphical Abstract