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Interest in improving the long-term sustainability of agricultural production systems has focused on identifying management practices that promote soil health. No tillage, cover cropping, and amending soils with broiler (Gallus gallus domesticus L.) litter are commonly adopted conservation practices that have been shown to improve soil fertility and crop yield. However, the overall influence of these conservation practices on soil health in the southeastern US are not well understood. Thus, a study was conducted to evaluate the influence of tillage, broiler litter (BL) applications, and cropping systems on soil biochemical properties. Soils were collected from field research plots under long-term management (>than 25 years of tillage, 15 years of broiler litter application, and 15 years of cropping system). Soil microbial biomass, C, N, and P, amidohydrolases, and dissolved organic matter (DOM) were evaluated as indicators of soil health. Adopting tillage and BL into the agricultural management system modified the biochemical parameters of the soils evaluated. Most of these modifications occurred in the 0–5 cm depth. Higher microbial biomass carbon (MBC; 85%) and nitrogen (MBN; 10%) and enzyme activities of asparaginase (65%) and glutaminase (70%) were observed in the 0–5 cm depth under no tillage (NT) compared to conventional tillage (CT), indicating greater biological activities were established in these soil ecosystems. Broiler litter applications increased microbial biomass N and activities of asparaginase and glutaminase in both soil depths. In addition, microbial biomass phosphorus (MBP) was increased following BL application in the 0–5 cm depth. The results suggest that long-term management of NT and BL additions can improve the health of eroded southeastern US soils by altering the soil biochemical parameters. [ABSTRACT FROM AUTHOR]

Improved tillage management in fragrant rice cropping systems can enhance soil organic carbon (SOC) and the content of 2-Acetyl-1-Pyrroline (2-AP), a crucial volatile compound contributing to the aroma of fragrant rice. Despite this, the interplay between 2-AP content in fragrant rice and SOC metabolism, alongside the influences exerted by soil microbial functions, remains poorly understood. This study introduces a comprehensive 6-year field experiment which aims to correlate SOC with rice grain 2-AP content by analyzing soil microbial KEGG functions, such as carbon and amino acid metabolism, using metagenomic sequencing. The experiment assessed three tillage practices, conventional tillage (CT), reduced tillage (RT), and no tillage (NT), with soil samples collected on three dates in 2022. The results indicated that NT significantly (p < 0.05) enhanced SOC content and modified carbon metabolism by upregulating the Calvin cycle (K01601) and reducing hemicellulose degradation (K01710). Additionally, NT notably increased the soil levels of alkaline amino acids, such as histidine and ornithine, which were 165.17% and 1218.42% higher, respectively, than those in CT, possibly linked to an increase in soil pH. Furthermore, the 2-AP content in fragrant rice under NT was significantly higher by 52.02% and 13.90% compared to under RT and CT, respectively. NT also upregulated K00250 (alanine, aspartate, and glutamate metabolism) and K00290 (valine, leucine, and isoleucine biosynthesis), leading to significantly higher levels of 2-AP biosynthesis-related amino acids proline and glutamate in fragrant rice grain. This study links SOC and 2-AP biosynthesis via soil microbial functions, presenting a novel strategy for improving the quality of fragrant rice through soil management practices. [ABSTRACT FROM AUTHOR]

Improved tillage management in fragrant rice cropping systems can enhance soil organic carbon (SOC) and the content of 2-Acetyl-1-Pyrroline (2-AP), a crucial volatile compound contributing to the aroma of fragrant rice. Despite this, the interplay between 2-AP content in fragrant rice and SOC metabolism, alongside the influences exerted by soil microbial functions, remains poorly understood. This study introduces a comprehensive 6-year field experiment which aims to correlate SOC with rice grain 2-AP content by analyzing soil microbial KEGG functions, such as carbon and amino acid metabolism, using metagenomic sequencing. The experiment assessed three tillage practices, conventional tillage (CT), reduced tillage (RT), and no tillage (NT), with soil samples collected on three dates in 2022. The results indicated that NT significantly (p < 0.05) enhanced SOC content and modified carbon metabolism by upregulating the Calvin cycle (K01601) and reducing hemicellulose degradation (K01710). Additionally, NT notably increased the soil levels of alkaline amino acids, such as histidine and ornithine, which were 165.17% and 1218.42% higher, respectively, than those in CT, possibly linked to an increase in soil pH. Furthermore, the 2-AP content in fragrant rice under NT was significantly higher by 52.02% and 13.90% compared to under RT and CT, respectively. NT also upregulated K00250 (alanine, aspartate, and glutamate metabolism) and K00290 (valine, leucine, and isoleucine biosynthesis), leading to significantly higher levels of 2-AP biosynthesis-related amino acids proline and glutamate in fragrant rice grain. This study links SOC and 2-AP biosynthesis via soil microbial functions, presenting a novel strategy for improving the quality of fragrant rice through soil management practices.

Soil amino acids (AAs) are the most active components of soil N, which can be mineralized or absorbed by bacteria as N and C sources. We hypothesized that exogenous AAs could regulate the bacterial community and affect soil N cycling, and the effect sizes could vary depending on individual AAs. Here, we applied feather (keratin)-based compost rich in AAs to Poncirus trifoliata (L.) to evaluate the regulation of bacterial community by AAs; furthermore, we applied six individual AAs to test their effects. The compost significantly increased soil hydrolysable AA content, ammonia monooxygenase gene abundance, and plant growth and changed bacterial community structure. Redundancy analysis revealed that the effects of AAs on the bacterial community composition were greater than those of soil chemical properties, and phenylalanine (Phe) was the most effective among thirteen individual AAs. When applied individually, Phe caused the greatest increase in N cycling-related enzyme activity and plant growth and most significantly altered the bacterial community structure among the six exogenous AAs. Notably, Phe significantly increased the relative abundances of Burkholderia-Caballeronia-Paraburkholderia , Azospirillum , Cupriavidus , and Achromobacter , whose abundances were significantly positively correlated with plant biomass, and significantly reduced the relative abundances of Arachidicoccus , Pseudopedobacter , Sphingobacterium , and Paenibacillus , whose abundances were significantly negatively correlated with plant biomass. We demonstrate that soil AAs strongly shape the bacterial community. Particularly, Phe enhances N cycling and plant growth by increasing the potentially beneficial bacterial taxa and inhibiting the potentially harmful bacterial taxa, which needs further validation. • Feather-based compost is rich in amino acids (AAs). • AA-rich compost greatly altered bacterial community and increased plant growth. • AAs had a greater impact on bacterial community than soil chemical properties. • Exogenous Phe enhanced soil N cycling and plant growth more than other AAs. • Exogenous Phe increased the beneficial bacteria and inhibited the harmful bacteria. [ABSTRACT FROM AUTHOR]

Amino acids are an important and highly dynamic fraction of organic N in soils and their determination in soil without derivatization is challenging due to the difficulties in separation and detection of trace amounts of these polar analytes. In the present work, we developed an analytical method to quantify 20 free amino acids in aqueous soil extracts without derivatization. The method employed hydrophilic interaction liquid chromatography–tandem mass spectrometry (HILIC–MS/MS) technique combined with a cation exchange solid phase extraction (SPE). Four stable isotope labelled amino acids were used as internal standards to improve the method performance. Good separation of 20 underivatized amino acids was achieved within 12 min. The limit of detection (LODs) and limit of quantification (LOQs) were in the range of 13–384 ng g −1 and 43–1267 ng g −1 (dry soil basis), respectively. The results showed that overall recoveries with high precision were obtained for the extracted free amino acids from ten different soils. The overall recoveries of 18 amino acids were similar for the ten soils used, which differed substantially in organic C content and in other properties as soil texture and pH. For most of the amino acids, the average recoveries from soil extracts were between 74% and 117%, with the exception of Met (31%), Pro (52%) and Arg (68%). Variability was within acceptable limits (relative standard deviations were between 4% and 13%), with the exception of Met (relative standard deviation = 90%) and Arg (relative standard deviation = 53%). Thus the proposed method with high throughout and high analyte specificity shows great promise for consistent analysis of free amino acids extracted from soils and offers new horizons for the analysis of amino acids in terrestrial and aquatic ecosystem. [ABSTRACT FROM AUTHOR]

Newly synthesized amino acids are the principle compounds created after inorganic nitrogen (N) is rapidly immobilized into microbial tissues. However, little is known about the mineralization kinetics of these newly synthesized amino acids compared to the amino acids originally present in the soil, and how substrate availability controls their mineralization. With 15N isotope tracing, the newly synthesized (15N-labeled) amino acids can be differentiated from the amino acids originally present (unlabeled) in soil, making it possible to evaluate the mineralization of the newly synthesized amino acids in tandem with the original amino acids. As amino acids can serve as both N and carbon (C) sources for microorganisms, the mineralization dynamics of amino acids may be manipulated by the availability of extraneous C and N. In this study, an aerobic 30-week intermittent leaching experiment was conducted, using glucose as C source and (14NH4)2SO4 as N source, following separate additions to soil. The newly synthesized amino acids were determined by an isotope-based high performance liquid chromatography/mass spectrometry (HPLC/MS). The newly synthesized soil amino acids mineralized faster than the original ones, which indicated more rapid cycling of N in the newly synthesized soil amino acids pool. Glucose addition significantly decreased the mineralization of both the newly synthesized and the original amino acids. However, when inorganic N was abundant, the newly synthesized amino acids decomposed rapidly, and preferentially as a C source and energy, while N addition inhibited the mineralization of the original amino acids in the soil. We conclude that the presence of readily degradable C (e.g. glucose) and inorganic N controls the mineralization of newly synthesized and original amino acid pools in soil differently, which is a crucial mechanism in adjusting the N supply and sequestration processes in soil ecosystems. [ABSTRACT FROM AUTHOR]

Soil amino acids are often an important source of nitrogen (N) for plants, and anticipated global changes, including climate warming and rising atmospheric CO levels, have the potential to alter plant and microbial production and consumption of this N source in soils. We determined soil amino acid composition over a 1-year period at diurnal and seasonal time scales in a multi-factor global change experiment with elevated CO and warming in native semiarid grassland. Soil amino acids were collected in April, May and June of 2011 and April 2012 using a soil water perfusion and extraction method that minimized soil disturbance. This was a particular advantage when taking diurnal measurements. The extracts were analyzed by ultra performance liquid chromatography. We detected 16 different soil amino acids throughout the study, and glutamine/glutamate (glu-x), arginine, serine and asparagine/aspartate (asp-x) were consistently at highest relative concentrations, comprising 3-41, 6-20, 2-22 and 7-24 % of total amino acids, respectively. No direct effects of experimental warming or elevated CO on soil amino acid composition were observed. However, the relative abundance of individual soil amino acids shifted diurnally and seasonally with changes in soil temperature and soil moisture. Glu-x and arginine increased and serine decreased with higher temperature, while asp-x and serine increased and arginine decreased with higher moisture. Overall, the relative abundances of soil amino acids responded more strongly to both diurnal and seasonal changes in temperature and soil moisture than to elevated atmospheric CO and experimental warming. [ABSTRACT FROM AUTHOR]

In this study, we evaluated trimethylsilyl (TMS) derivatives as derivatization reagents for the compound-specific stable carbon isotope analysis of soil amino acids by gas chromatography–combustion–isotope ratio mass spectrometry (GC–C–IRMS). We used non-proteinogenic amino acids to show that the extraction–derivatization–analysis procedure provides a reliable method to measure δ13C values of amino acids extracted from soil. However, we found a number of drawbacks that significantly increase the final total uncertainty. These include the following:production of multiple peaks for each amino acid, identified as di-, tri- and tetra-TMS derivatives;a number of TMS-carbon (TMS-C) atoms added lower than the stoichiometric one, possibly due to incomplete combustion;different TMS-C δ13C for di-, tri- and tetra-TMS derivatives. For soil samples, only four amino acids (leucine, valine, threonine and serine) provide reliable δ13C values with a total average uncertainty of 1.3 ‰. We conclude that trimethylsilyl derivatives are only suitable for determining the13C incorporation in amino acids within experiments using13C-labelled tracers but cannot be applied for amino acids with natural carbon isotope abundance until the drawbacks described here are overcome and the measured total uncertainty significantly decreased. [ABSTRACT FROM PUBLISHER]

Abstract: In studies of soil nitrogen (N) cycling, there is growing demand for accurate high-throughput analyses of amino acids and other small organic N compounds. We adapted an existing fluorometric amino acid method based on o-phthaldialdehyde and β-mercaptoethanol (OPAME) for use in 96-well microplates, and tested it using standards and field samples. While we started with an existing protocol, we made one critical change: instead of using a 1-min incubation period, we used a 1-h incubation period to deal with differences in reaction timing among microplate wells and to reduce interference from ammonium. Our microplate method is similar in sensitivity to existing protocols and able to determine leucine standard concentrations as low as ∼0.5 μM. Finally, we demonstrate that the OPAME reagent fluoresces in the presence of primary amines other than amino acids, such as amino sugars and tyramine. Because of this broad sensitivity to primary amines, descriptions of the measured pool should be revised from total free amino acids (TFAA) to total free primary amines (TFPA). [Copyright &y& Elsevier]

Abstract: Addressing the limited knowledge of nitrogen (N) pools in tropical agricultural soils and the need to reduce N losses from these systems, we analysed soluble organic and inorganic N in two Hydrosols under sugarcane. Concentrations of ammonium and nitrate spanned ∼3 – orders of magnitude (0.2–41.0mg ammonium-N, 0–10.7mg nitrate-Nkg−1 soil) with the highest concentrations detected within 2–3 months of fertiliser application. Soluble amino acids spanned 1-order of magnitude (0.22–2.42mg amino acid-Nkg−1 soil) and accounted for up to 70% of the low-molecular weight N. Amino acid concentrations were usually highest in the wet season and uniform across soil depth, indicating that amino acids are generated throughout the studied profile. We compared soluble and dissolved (free) N in the soil solution in a subset of samples. In soil solution, amino acid, ammonium and nitrate concentrations averaged 20, 265 and 1820μM, respectively, corresponding to ∼10% (amino acids), ∼20% (ammonium) and ∼100% (nitrate) of the soluble N pool. We calculated an annual gross amino acid flux in the dissolved N pool in the order of 2–6tonsNha−1 yr−1 in the upper 40cm of soil. We discuss whether amino acids can significantly contribute to the N demand of sugarcane. [Copyright &y& Elsevier]

Abstract: Free amino acids (FAAs) in soil solution are increasingly recognized as a potentially important source of nitrogen (N) for plants, yet we are just beginning to understand the behavior of FAAs in soil. I investigated the effects of amino-acid chemistry and soil properties on mineralization, microbial assimilation and sorption of amino-acid N in soils from three ecosystems representing the two endpoints and mid point of a temperate forest fertility gradient ranging from low mineral N availability/high FAA oak forests to high mineral N availability/low FAA maple-basswood forests. Soils were amended with six 15N-labeled amino-acid substrates that ranged widely in chemical properties, including molecular weight, C:N ratio, average net charge, hydrophobicity, and polarity: Arginine (Arg), Glutamine (Gln), Glutamate (Glu), Serine (Ser), Glycine (Gly) and Leucine (Leu). Mineralization of amino-acid N accounted for 7–45% (18% avg.) of the added label and was most strongly affected by soil characteristics, with mineralization increasing with increasing soil fertility. Mineralization of amino-acid N was unrelated to amino-acid C:N ratio, rather, I observed greater N mineralization from polar FAAs compared to non-polar ones. Assimilation of amino-acid N into microbial biomass accounted for 6–48% (29% avg.) of the added label, and was poorly predicted by either intrinsic amino-acid properties or soil properties, but instead appeared to be explicable in terms of compound-specific demand by soil micoorganisms. Sorption of amino-acid N to soil solids accounted for 4–15% (7% avg.) of the added label and was largely controlled by charge characteristics of individual amino acids. The fact that both positively- and negatively-charged amino acids were more strongly sorbed than neutral ones suggests that cation and anion exchange sites are an important factor controlling sorption of FAAs in these acid forest soils. Together, the findings from this study suggest that there may be important differences in the behavior of free amino acids in sandy, acidic forest soils compared to generalizations drawn from finer-textured grassland soils, which, in turn, might affect the availability of some FAAs in soil solution. [Copyright &y& Elsevier]

Despite increasing recognition that free amino acids can be an important source of N for plant uptake, we have a poor understanding of environmental variation in the availability of amino-acid N in soils outside of arctic, alpine and boreal regions. I investigated patterns of amino-acid availability along a temperate forest fertility gradient ranging from low mineral N availability, oak-dominated forests to high mineral N availability, maple-basswood forests (5 sites). I measured standing pools of free amino acids, soluble peptides, ammonium and nitrate, rates of amino acid production (native proteolysis activity) and rates of consumption of a 15N-labeled leucine tracer. Standing pools of amino acid N decreased consistently along the fertility gradient from the low fertility black oak/white oak system to the high fertility sugar maple/basswood system, with a 25-fold difference in pool sizes between the poorest and richest sites. Standing pools of soluble peptides varied little among sites, instead, the relationship between free amino acids and peptides changed markedly across the gradient. At low fertility sites free amino acids were positively correlated with soluble peptides, whereas free amino acid pools were universally low at high fertility sites, regardless of peptide pools. Assays for native proteolysis activity indicated that amino acid production did not vary significantly among sites. Recovery of leucine tracer in inorganic (NH4 + and NO3 −) pools and in residual soil organic matter both increased with increasing soil fertility; however, total consumption of the added amino-acid tracer did not vary among sites. Results from this study demonstrate that free amino acids can make an important contribution to potentially plant-available N pools in temperate forest soils, particularly at low fertility sites. [ABSTRACT FROM AUTHOR]

Past research strongly indicates the importance of amino acids in the N economy of the Arctic tundra, but little is known about the seasonal dynamics of amino acids in tundra soils. We repeatedly sampled soils from tussock, shrub, and wet sedge tundra communities in the summers of 2000 and 2001 and extracted them with water (H2O) and potassium sulfate (K2SO4) to determine the seasonal dynamics of soil amino acids, ammonium (NH4+), nitrate (NO3-), dissolved organic nitrogen (DON), dissolved organic carbon (DOC), and phosphate (PO42-). In the H2O extractions mean concentrations of total free amino acids (TFAA) were higher than NH4+ in all soils but shrub. TFAA and NH4+ were highest in wet sedge and tussock soils and lowest in shrub soil. The most predominant amino acids were alanine, arginine, glycine, serine, and threonine. None of the highest amino acids were significantly different than NH4+ in any soil but shrub, in which NH4+ was significantly higher than all of the highest individual amino acids. Mean NO3- concentrations were not significantly different from mean TFAA and NH4+ concentrations in any soil but tussock, where NO3- was significantly higher than NH4+. In all soils amino acid and NH4+ concentrations dropped to barely detectable levels in the middle of July, suggesting intense competition for N at the height of the growing season. In all soils but tussock, amino acid and NH4+ concentrations rebounded in August as the end of the Arctic growing season approached and plant N demand decreased. This pattern suggests that low N concentrations in tundra soils at the height of the growing season are likely the result of an increase in soil N uptake associated with the peak in plant growth, either directly by roots or indirectly by microbes fueled by increased root C inputs in mid-July. As N availability decreased in July, PO42- concentrations in the K2SO4 extractions increased dramatically in all soils but shrub, where there was a comparable increase in PO42- later in the growing season. Previous research suggests that these increases in PO42- concentrations are due to the mineralization of organic phosphorus by phosphatase enzymes associated with soil microbes and plant roots, and that they may have been caused by an increase in organic P availability. [ABSTRACT FROM AUTHOR]

Abstract: Classic methods of soil amino acid (SAA) determination involve field collection of soils and disturbance during storage, sieving, mixing and extraction in the laboratory. We describe a novel inexpensive method for extraction of SAA''s in situ with minimal soil disturbance. In a comparison between methods of SAA extraction from a semiarid grassland site, glu-x and arginine were the dominant SAA nitrogen sources detected by the novel method while serine and glycine were the dominant SAA nitrogen sources detected using the classic method. The extraction method employed is likely to be useful for accurate determination of SAA availability to plants and soil microbes. [Copyright &y& Elsevier]