1. Prediction of intracellular targets of a small compound by analyzing peptides presented on MHC class I.
- Author
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Sugimoto, Yuna, Murohashi, Michiko, Arakawa, Satoko, Honda, Shinya, and Shimizu, Shigeomi
- Subjects
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INTRACELLULAR pathogens , *PEPTIDES , *CHEMICAL biology , *DRUG development , *AUTOPHAGY - Abstract
Abstract In chemical biology, the elucidation of chemical target is crucial for successful drug development. Because MHC class I molecules present peptides from intracellular damaged proteins, it might be possible to identify targets of a chemical by analyzing peptide sequences on MHC class I. Therefore, we treated cells with the autophagy-inducing chemical TMD-457 and identified the peptides presented on MHC class I. Many of the peptides were derived from molecules involved in ER trafficking and ER stress, which were confirmed by morphological and biochemical analyses. Therefore, our results demonstrate that analyzing MHC class I peptides is useful for the detection of chemical targets. Highlights • We investigated whether analyzing class I peptides is useful for the identification of stress-responsive molecules. • The peptides presented on MHC class I by starvation were starvation-responsive molecules. • Uncharacterized autophagy-inducing chemical presented peptides derived from molecules involved in ER stress. • Morphological a biochemical analyses confirmed the failure of ER trafficking by this chemical. • Analyzing MHC class I peptides is useful for the detection of chemical targets. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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