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ABSTRACT In Chile, Atlantic salmon and rainbow trout face significant production challenges due to the presence of Flavobacterium psychrophilum, which generates severe disease issues and economic losses. To address this, the salmon industry relies on vaccines and antibiotics, the latter raising concerns about bacterial resistance. For that reason, our study explores an alternative strategy for controlling F. psychrophilum infections based on host defence peptides. We previously identified and characterised IL‐8‐derived salmonid peptides (ssIL‐8α and omIL‐8α) with potential antimicrobial properties. In the current study, we further investigated the antibacterial activity and mechanism of action of these peptides against F. psychrophilum. First, we demonstrated the antibacterial activity of ssIL‐8α and omIL‐8α synthetic peptides. Then we evaluated the effects of these peptides on membrane fluidity and localisation on bacterial cells by fluorescence microscopy as well as its impact on bacterial morphology and ultrastructure by electron microscopy. The results indicate that the ssIL‐8α at 30 μM exhibits superior efficacy in inhibiting the growth of F. psychrophilum. Also, both ssIL‐8α and omIL‐8α can bind to pathogen membrane, but ssIL‐8α exhibits a higher binding capacity compared to omIL‐8α against F. psychrophilum. omIL‐8α exhibited the ability to induce early membrane alterations within 15 min, at concentrations of 15 or 30 μM. The SEM and TEM micrographs showed membrane disruption of the bacteria after incubation with ssIL‐8α or omIL‐8α. However, the damage was more pronounced in the ssIL‐8α treatment, as evidenced by a complete detachment of the outer membrane after a 20‐min exposure of F. psychrophilum. This study reveals that these peptides significantly alter bacterial membrane morphology, leading to bacterial death, highlighting their potential as alternative treatments in flavobacterial disease control. This work contributes to understanding host defence peptides' role in combating bacterial infections and reducing antibiotic resistance in aquaculture. [ABSTRACT FROM AUTHOR]

The relative level of gene expression of enzymes, like desaturases and elongases (fadsd5, fadsd6, elovl2, elovl5a, and elovl4), which play a key role in the biosynthesis of long-chain polyunsaturated fatty acids, was studied in the liver of juvenile Atlantic salmon Salmo salar Linnaeus, 1758, reared under different lighting and feeding regimes in aquaculture conditions. The level of the fadsd5 desaturase gene expression was higher in Atlantic salmon smolts (0+) reared under regime of round-the-clock lighting and feeding compared to smolts from the experimental group with a natural photoperiod and daylight feeding. Changes in the level of gene expression (elovl2, elovl5a, and fadsd5) in juvenile Salmo salar reflect adaptive processes at the molecular genetic level during the growth and development of fish and in response to changes in environmental conditions. The obtained results make it possible to assess the capability/requirements for the biosynthesis of PUFAs in juvenile salmon during its growth and development. [ABSTRACT FROM AUTHOR]

Atlantic salmon aquaculture companies in British Columbia (BC) must report fish health events to Fisheries and Oceans Canada (DFO) as part of their licensing conditions. Our study aimed to summarize these fish health events reported by Atlantic salmon sites in BC to identify spatial and spatio‐temporal clusters. We conducted descriptive, retrospective global, and local cluster analyses using Moran's I and scan statistics. Between 2016 and 2022, 265 fish health events were reported. The annual incidence ranged from 5.60 (95% CI: 3.90–7.80) to 6.86 (95% CI: 4.70–9.60) health events per 100 active site‐months. The most common events were yellow mouth (60.75%; 161/265) and salmonid rickettsial septicaemia (SRS) (15.47%; 41/265). The Moran's I index was positive and significant for yellow mouth, SRS, and overall fish health events at different distance bands. Most of the spatial and spatio‐temporal clusters were identified in the west‐central and southwestern parts of Vancouver Island. Our study hypothesizes that management practices, environmental conditions, and water quality parameters may have influenced the increased reporting of fish health events in these regions. Overall, the study highlights the potential of publicly available data for practical risk mapping in understanding the patterns of farmed Atlantic salmon diseases in BC. [ABSTRACT FROM AUTHOR]

The ectoparasitic salmon louse (Lepeophtheirus salmonis Krøyer, 1837) persists as a major hindrance for continued growth of the Norwegian salmon industry. Shielding technologies or management strategies are being used to reduce the likelihood of contact in the net pens between the salmon and the sea lice's infectious copepodid stage. Knowledge about the vertical distribution and diel migration patterns of the planktonic sea lice stages are inevitably a premise for such water-depth-dependent avoidance technologies to be efficient; however, not many studies have investigated diel vertical migration patterns of sea lice in situ or in relevant scales. In this work, we aimed to monitor the diel migration of L. salmonis copepodids in the vertical plane without the influence of hydrographical forces, using sufficient water column depth of 11 m, natural thermoclines, and natural exogenous light conditions. We followed a cohort of copepodids over the course of 4 days and measured their vertical distribution in the water column twice per hour in a custom made mesocosm, using automatic particle detection and machine learning to analyse position and migration patterns. The L. salmonis copepodid population displayed reverse diel migration, and we found a statistically significant interaction between depth and time. During the day, copepodids were found in the upper 1 m of the water column, before the majority of the population descended to 1–2 m depth during night-time. A small fraction of the population remained in the upper part of the water column also during night-time. A significantly higher fraction of the copepodid population resided in the upper metre during daylight hours compared to other depths. These results could be utilised as input in sea lice dispersal models which are important management tools in today's sea lice prevention strategies and regulatory frameworks. [ABSTRACT FROM AUTHOR]

Juvenile Atlantic salmon (Salmo salar), known as post-smolt as they enter the sea, undergo an arduous migration from their natal rivers to their feeding grounds in the North Atlantic Ocean. It has become increasingly important to understand how post-smolts use the fjord environment as they migrate in order to properly assess the potential threats posed by large-scale salmon farming. Chief among these threats is the increased numbers of ectoparasitic salmon lice (Lepeophtheirus salmonis) inhabiting the water column, which are known to have specific depth preferences based on light, temperature, and salinity. Here, we present data on the depth use of wild Atlantic salmon post-smolts migrating through fjords. We aimed to investigate to what extent depth use varied throughout the fjord and from year to year. Using acoustic telemetry, tagged fish from four rivers in two fjords in western Norway were monitored as they migrated towards the open sea during two consecutive years. We found that post-smolts predominantly migrated in the top three meters of the water column throughout the length of both fjord systems. Among 61 successful migrants and 7013 detections, 98% of detections were in the top three meters of the water column. This corresponds well with past findings showing similar depth use in hatchery-reared smolt and in adult Atlantic salmon kelts returning to their feeding grounds after spawning. We found little evidence of a consistent diel pattern in depth use. Our results support assumptions of representative sampling when trawling the upper portion of the water column for post-smolts in order to estimate sea lice infection rates and may improve the precision of efforts to model salmon lice infection risk. The results may also be valuable in evaluating other threats to wild salmon. [ABSTRACT FROM AUTHOR]

Aeromonas salmonicida and Yersinia ruckeri are common pathogenic bacteria that impact salmonid aquaculture. Although vaccinations are available against both organisms, large-scale vaccination efforts can be expensive, cumbersome, and are not always reliable. Alternatively, these pathogens have been effectively inactivated using UV radiation from mercury-based systems. These systems are energy intensive and fragile which currently limits their use to closed and semi-closed production systems. UV light emitting diodes (UV LEDs) have recently emerged as a novel alternative to traditional mercury-based treatment. UV LEDs have durable housing, a relatively low energy draw, can be powered by a battery source and are adaptable to challenging environments. This study examined the effectiveness of three UV LED wavelengths for disinfection of A. salmonicida and Y. ruckeri in pure culture and resuspended in a wastewater matrix. All tested UV LEDs were effective in disinfecting both organisms. 267 and 279 nm wavelengths outperformed 255 nm disinfection in both test matrices. Particulate matter from wastewater reduced the upper limit of treatment for A. salmonicida but results still indicated that all wavelengths were effective for disinfection in a challenging matrix. This study represents the first use of UV LEDs for disinfection of A. salmonicida and Y. ruckeri and provides impact to aquaculture producers looking to implement novel technologies for disease control. [ABSTRACT FROM AUTHOR]

The use of lumpfish (Cyclopterus lumpus L.) as cleaner fish in Atlantic salmon aquaculture has emerged as a promising solution to combat the issue of sea lice infestation, as they have proven effective under the right conditions. The aquaculture industry, however, is facing challenges in ensuring the welfare and survival of lumpfish in salmon cages. Part of the welfare monitoring of lumpfish is the estimation of body condition. Previous research on standard length-weight relationships for lumpfish has primarily relied on the growth patterns of lumpfish in salmon cages, which might not align with the natural growth patterns of the fish. In this study, we argue for another perspective: using the standard weight of wild lumpfish to estimate the body condition of lumpfish in salmon cages. We assert that this approach aligns more closely with the natural growth pattern of the fish and may offer a more accurate representation of their condition. Our findings show significant differences in growth patterns between wild lumpfish, which show positive allometric growth, and those in salmon cages, which show slightly negative allometric growth. The findings underscore the importance of using appropriate length-weight relationships for lumpfish in aquaculture to ensure an accurate assessment of their body condition. [ABSTRACT FROM AUTHOR]

ABSTRACT Real‐time PCR (qPCR) testing is an essential component of early detection surveillance systems for Piscirickettsia salmonis infection in Atlantic salmon farms in Chile. Currently, all 11 laboratories in the authorised diagnostic laboratory network use assays based on published protocols. Compared with other P. salmonis qPCR assays, these assays have the advantage of targeting two different genes, that is, the 16S ribosomal gene and the internal transcribed spacer (ITS), potentially allowing for higher diagnostic accuracy. However, variation and lack of harmonisation of qPCR testing systems (e.g., primers/probe, RNA/DNA as target, extraction methods, etc.) may contribute to among‐laboratory variation in qPCR results and an increased frequency of false‐negative and false‐positive results. The purpose of the ring trial reported herein was to compare qPCR results from 11 laboratories in Chile routinely testing Atlantic salmon for P. salmonis as part of a national control program. The panel of 14 samples included duplicates of three concentrations of P. salmonis in a homogenised head kidney, LF89 and EM90 bacteria and two negative controls (blank and a suspension of Flavobacterium psychrophilum). The sample order was randomised across labs, samples were tested blinded and analysed without knowledge of the source lab. Of the laboratories, 8 (72.7%) had at least one incorrect result out of 14 tested samples. Low‐concentration samples (Ct of about 30) were more often incorrectly classified by reverse transcription‐qPCR (RT‐qPCR) (3/6 labs) than by qPCR (0/5). Six (54.5%) labs had at least one false‐positive result indicating that cross‐contamination was likely during sample processing. Affected laboratories are advised to conduct internal investigations to confirm the causes of false‐positive results and recommendations for design and implementation of future ring trials are discussed. [ABSTRACT FROM AUTHOR]

The sustainability of the salmon farming industry is being challenged by increased mortality rates. Scotland's open-source salmon production data provides the possibility of developing an industry-wide mortality monitoring model, valuable for identifying and addressing unexpected increases in mortality without needing data sharing agreements across different companies. This study aimed to utilize these data to develop a hierarchical dynamic linear model (DLM) for monitoring monthly mortality of maricultured Atlantic salmon in Scotland. We evaluated whether considering the hierarchical structure present in the data (country, region, and site) would improve mortality predictions when compared to the production cycle level DLMs developed in a previous study. Our findings demonstrated that the hierarchical DLM outperformed the production cycle level DLMs, confirming the value of this more complex modelling approach. Nevertheless, the hierarchical model, like the production cycle level DLMs, exhibited some uncertainty in the mortality predictions. When mortality is higher than expected, site level warnings are generated, which can encourage producers and inspectors to further investigate the cause. Between 2015 and 2020, approximately 25% of the production cycles and 50% of the sites encountered at least one warning, with most warnings happening in the summer and autumn months. Additionally, the hierarchical model enabled monitoring mortality at multiple levels. This information is useful for various stakeholders as part of a monitoring system, offering insights into mortality trends at national, regional, and sites levels that may benefit from strategic resource management. Recommendations for model improvements include utilizing shorter data aggregation periods, such as weekly, which are not currently available as open-source data. [ABSTRACT FROM AUTHOR]

Background: Salmon aquaculture involves freshwater and seawater phases. Recently there has been an increase in multifactorial gill health challenges during the seawater phase which has led to an urgent need to understand the gill microbiome. There is a lack of understanding on what drives the composition of the gill microbiome, and the influence the freshwater stage has on its long-term composition. We characterise the gill microbiome from seven cohorts of Atlantic salmon raised in six different freshwater operational systems—recirculating aquaculture system (RAS), flowthrough (FT) and loch-based system, prior to and after transfer to seven seawater farms, over two different input seasons, S0 (2018) and S1 (2019). Results: Using the V1-V2 region of the 16S rRNA gene, we produced amplicon libraries absent of host contamination. We showed that hatchery system influenced the gill microbiome (PERMAOVA R2 = 0.226, p < 0.001). Loch and FT systems were more similar to each other than the three RAS systems, which clustered together. On transfer to sea, the gill microbiomes of all fish changed and became more similar irrespective of the initial hatchery system, seawater farm location or season of input. Even though the gill microbiome among seawater farm locations were different between locations (PERMAOVA R2 = 0.528, p < 0.001), a clustering of the gill microbiomes by hatchery system of origin was still observed 7–25 days after transfer (PERMAOVA R = 0.164, p < 0.001). Core microbiomes at genera level were observed among all fish in addition to freshwater only, and seawater only. At ASV level core microbiomes were observed among FT and loch freshwater systems only and among all seawater salmon. The gill microbiome and surrounding water at each hatchery had more shared ASVs than seawater farms. Conclusion: We showed hatchery system, loch, FT or RAS, significantly impacted the gill microbiome. On transfer to sea, the microbiomes changed and became more similar. After transfer, the individual sites to which the fish were transferred has a significant influence on microbiome composition, but interesting some clustering by hatchery system remained. Future gill disease mitigation methods that target enhancing the gill microbiome may be most effective in the freshwater stage, as there were more shared ASVs between water and gill at hatchery, compared to at sea. [ABSTRACT FROM AUTHOR]

Background: Aquaculture and salmon farming can cause environmental problems due to the pollution of the surrounding waters with nutrients, solid wastes and chemicals, such as antibiotics, which are used for disease control in the aquaculture facilities. Increasing antibiotic resistance in human-impacted environments, such as coastal waters with aquaculture activity, is linked to the widespread use of antibiotics, even at sub-lethal concentrations. In Chile, the world's second largest producer of salmon, aquaculture is considered the primary source of antibiotics residues in the coastal waters of northern Patagonia. Here, we evaluated whether the structure and diversity of marine bacterial community, the richness of antibiotic resistance bacteria and the frequency of antibiotic resistance genes increase in communities from the surface seawater of an area with salmon farming activities, in comparison with communities from an area without major anthropogenic disturbance. Results: The taxonomic structure of bacterial community was significantly different between areas with and without aquaculture production. Growth of the culturable fraction under controlled laboratory conditions showed that, in comparison with the undisturbed area, the bacterial community from salmon farms displayed a higher frequency of colonies resistant to the antibiotics used by the salmon industry. A higher adaptation to antibiotics was revealed by a greater proportion of multi-resistant bacteria isolated from the surface seawater of the salmon farming area. Furthermore, metagenomics data revealed a significant higher abundance of antibiotic resistant genes conferring resistance to 11 antibiotic families in the community from salmon farms, indicating that the proportion of bacteria carrying the resistance determinants was overall higher in salmon farms than in the undisturbed site. Conclusions: Our results revealed an association between bacterial communities and antibiotic resistance from surface seawater of a coastal area of Chile. Although the total bacterial community may appear comparable between sites, the cultivation technique allowed to expose a higher prevalence of antibiotic resistant bacteria in the salmon farming area. Moreover, we demonstrated that metagenomics (culture-independent) and phenotypic (culture-dependent) methods are complementary to evaluate the bacterial communities' risk for antibiotic resistance, and that a human—influenced environment (such as salmon farms) can potentiate bacteria to adapt to environmental stresses, such as antibiotics. [ABSTRACT FROM AUTHOR]

Introduction: Piscirickettsia salmonis, the causative agent of Piscirickettsiosis, poses a significant threat to the Chilean aquaculture industry, resulting in substantial economic losses annually. The pathogen, first identified as specie in 1992, this pathogen was divided into two genogroups: LF-89 and EM-90, associated with different phenotypic mortality and pathogenicity. Traditional genotyping methods, such as multiplex PCR, are effective but limited by their cost, equipment requirements, and the need for specialized expertise. Methods: This study validates Loop-mediated Isothermal Amplification (LAMP) as a rapid and specific alternative for diagnosing P. salmonis infections. We developed the first qPCR and LAMP assay targeting the species-conserved tonB receptor gene (tonB-r, WP_016210144.1) for the specific species-level identification of P. salmonis. Additionally, we designed two genotyping LAMP assays to differentiate between the LF-89 and EM-90 genogroups, utilizing the unique coding sequences Nitronate monooxygenase (WP_144420689.1) for LF-89 and Acid phosphatase (WP_016210154.1) for EM-90. Results: The LAMP assays demonstrated sensitivity and specificity comparable to real-time PCR, with additional benefits including rapid results, lower costs, and simplified operation, making them particularly suitable for field use. Specificity was confirmed by testing against other salmonid pathogens, such as Renibacterium salmoninarum, Vibrio ordalii, Flavobacterium psychrophilum, Tenacibaculum maritimum, and Aeromonas salmonicida, with no cross-reactivity observed. Discussion: The visual detection method and precise differentiation between genogroups underscore LAMP's potential as a robust diagnostic tool for aquaculture. This advancement in the specie detection (qPCR and LAMP) and genotyping of P. salmonis represents a significant step forward in disease management within the aquaculture industry. The implementation of LAMP promises enhanced disease surveillance, early detection, and improved management strategies, ultimately benefiting the salmonid aquaculture sector. [ABSTRACT FROM AUTHOR]

ABSTRACT Haematological and plasma parameters are used in veterinary medicine as a diagnostic tool, allowing for the early detection of potential health and welfare issues. For the implementation of monitoring strategies, reference intervals (RIs) are needed to know when deviations in those parameters become clinically relevant. Here, haematological and plasma biochemical RIs of Norwegian Atlantic salmon (Salmo salar Linnaeus) are presented for 29 biomarkers. Two subgroups were defined from the reference population based on water type, referred to as pre‐adult (freshwater, 166.8 ± 118.4 g, N = 979) and adult (seawater, 2655 ± 2883 g, N = 4941), collected at 93 fish farms along the Norwegian coast. While the influence of various pre‐analytical variables on RIs is well documented, aquaculture practitioners cannot always control those variables in the field. Here, RIs were calculated from blood samples collected based on local pre‐analytical practices and then further processed under standardised conditions (analytical phase). RIs are therefore considered highly relevant for the application in the field. Finally, when taking blood samples in the field, it is advised to centrifuge whole blood as soon as possible, while plasma parameters investigated were stable for 168 h at 4°C or 72 h at room temperature. [ABSTRACT FROM AUTHOR]

Atlantic salmon Salmo salar typically enter fresh water several months prior to spawning and just as pools can provide areas of refuge in river systems, lakes may also provide important refuge habitat during the spawning migration. Using acoustic telemetry we examined the spatial and temporal movements of wild and a ranched strain of Atlantic salmon in a freshwater lake where the main spawning areas were located upstream of the lake. Over the study period (2011–2014), returning adult wild salmon spent an average of 228 days in fresh water and 90% of that time in the lake. On entering the lake, most wild salmon moved quickly to the northern part of the lake, close to the main inflow, spending an average 76% of the time in this location. The average number of days wild fish were absent from the lake during the main spawning period varied between years, ranging from 10 to 26 days for females and 32 to 35 days for males. Seventy four per cent (17/23) of salmon spawners returned to the lake and two salmon subsequently died in the lake post‐spawning. Atypically, two salmon were resident in the lake for the whole period in 2013/14. During the study, wild salmon were detected at depths within the top 5 m for 73% of the time. Median depths post‐spawning were greater than in the pre‐spawning period, when salmon were found to spend extensive periods at depths in excess of 10 m. In July 2013, when the lake was stratified, thermal regulation behaviour was observed in wild salmon, whereby salmon moved to cooler deeper water when water temperatures at 1 m exceeded 20°C. In contrast to wild salmon, the majority of ranch salmon returned to the traps downstream of the lake prior to the spawning period, which would be expected as they were released as smolts below the freshwater lake. Ranch fish spent an average 80% of the time in the vicinity of receivers in the south of the lake and an average 98% of the time within the top 5 m. However, two ranch females were resident in the lake until the following spring and one ranch female moved upstream into the river during the spawning period. Clearly, in this catchment the lake provides an important habitat for migrating adult salmon. In the context of climate change, where thermal and hydrological regimes in rivers are expected to change in response to changes in air temperature and precipitation patterns, the availability of deep lakes that stratify in the summer and cool water refuges in river systems is likely to play a key role in the sustenance and conservation of salmonid species. Information about the migration patterns of Atlantic salmon in undisturbed freshwater systems may also assist in resolving issues associated with fish passage in impacted rivers and inform management decisions. [ABSTRACT FROM AUTHOR]

Finfish aquaculture is one of the fastest-growing food production sectors in the world, and numerous infectious diseases are a constant challenge to the fish farming industry, causing decreased fish health and, consequently, economic losses. Specific and sensitive tools for pathogen detection are crucial for the surveillance of environmental samples to prevent the spread of fish pathogens in farms. Monitoring of waterborne pathogens through filtration of water and subsequent molecular detection of target-specific DNA or RNA sequence motifs is an animal-friendly method. This approach could reduce or even replace the sacrifice of fish for monitoring purposes in aquaculture and allow earlier implementation of disease control measures. Sampling methods might be a bottleneck, and there is a need for simple sampling methods that still ensure the best detection probability. In this study, we tested different filtration methods with spiked freshwater and seawater for a panel of fish pathogens to discern a suitable procedure that can be easily applied on-site by farm personnel without compromising detection probability. Specifically, we tested combinations of different filtration flow rates, lysis buffers, and filters for the detection of some of the pathogens relevant to the aquaculture industry. The results showed that a "sandwich" filtration method using two different filters and a flow rate of up to 4.0 L/min ensured good pathogen detection. The filters, consisting of a hydrophilic glass fibre filter with binder resin on the top and a hydrophilic mixed cellulose esters membrane at the bottom, achieved the best concentration and qPCR detection of both viral and bacterial fish pathogens. This up-and-coming tool allows the detection of very different fish pathogens during a single filtration step, and it can be combined with one single automated total nucleic acid extraction step for all the investigated pathogens, reducing both analysis costs and time. [ABSTRACT FROM AUTHOR]

The spread of pathogens from farmed salmon is a conservation concern for wild Pacific salmon in British Columbia (BC), Canada. Three pathogens are prevalent in farmed Atlantic salmon in BC, spill over to wild Pacific salmon, and are linked to negative impacts on wild salmon: Piscine orthoreovirus, Tenacibaculum spp., and sea lice (Lepeophtheirus salmonis). Molecular screening of infectious agents in farmed and wild salmon and environmental DNA highlights a further 4 agents that are likely elevated near salmon farms and 37 that co-occur in wild and farmed salmon. Pathogens likely affect wild salmon indirectly by mediating migration, competition, and predation. Current net-pen aquaculture practices pose these risks to numerous populations of all species of wild salmon in BC, most of which are not covered in Government of Canada science and advisory reports. Climate change, pathogen evolution, and changes to disease management and aquaculture regulations will influence future risks. [ABSTRACT FROM AUTHOR]

Aquacultured carnivorous species consume most of the world's fishmeal and fish oil (FMFO), which itself is primarily derived from small pelagic fish. This has raised concerns about the practice's impact on wild fish stocks, ecosystems, and coastal communities that rely on these fish. The aquaculture industry claims a decreasing dependence on wild fish, relying on the Fish In:Fish Out (FIFO) metric as a ratio of the quantity of wild fish required for farmed fish production. This is misleading because it usually assumes constant FM or FO yields, inclusion rates and feed conversion ratios, which vary widely. Thus, a constant FIFO value for a given species cannot be assumed. Furthermore, low FIFO values resulting from averaging carnivores and herbivores conceal the high feed requirements of carnivore species. The increasing use of FMFO from by-products does not demonstrate a decreased use of wild fish but rather reflects a growing demand for FMFO, particularly for the fast growing and valuable salmon and shrimp farming industries. [ABSTRACT FROM AUTHOR]

Salmonid rickettsial septicemia (SRS), caused by Piscirickettsia salmonis, has been the most severe health concern for the Chilean salmon industry. The efforts to control P. salmonis infections have focused on using antibiotics and vaccines. However, infected salmonids exhibit limited responses to the treatments. Here, we developed a poly (D, L-lactide-glycolic acid) (PLGA)-nanosystem functionalized with Atlantic salmon IgM (PLGA-IgM) to specifically deliver florfenicol into infected cells. Polymeric nanoparticles (NPs) were prepared via the double emulsion solvent-evaporation method in the presence of florfenicol. Later, the PLGA-NPs were functionalized with Atlantic salmon IgM through carbodiimide chemistry. The nanosystem showed an average size of ~380–410 nm and a negative surface charge. Further, florfenicol encapsulation efficiency was close to 10%. We evaluated the internalization of the nanosystem and its impact on bacterial load in SHK-1 cells by using confocal microscopy and qPCR. The results suggest that stimulation with the nanosystem elicits a decrease in the bacterial load of P. salmonis when it infects Atlantic salmon macrophages. Overall, the IgM-functionalized PLGA-based nanosystem represents an alternative to the administration of antibiotics in salmon farming, complementing the delivery of antibiotics with the stimulation of the immune response of infected macrophages. [ABSTRACT FROM AUTHOR]

A successful control of sexual maturation is crucial for year-round production of lumpfish juveniles destined as cleaner fish in Atlantic salmon aquaculture. This study investigated the combined effects of photoperiod and temperature manipulations on sexual maturation and spawning in lumpfish females. Lumpfish juveniles were exposed to simulated natural and nine-month compressed annual photoperiods, with subsequent temperature elevation. Body weight (BW), condition factor (K), gonadosomatic index (GSI), ovarian development, plasma levels of 17β-estradiol (E2), testosterone (T) and 11-ketotestosterone (11-KT), and spawning were assessed. Compressing the natural photoperiod caused a clear increase and decrease in GSI, T, 11-KT and E2 towards and during the spawning period. Before the temperature elevation, GSI, T, 11-KT, E2 and ovarian development were advanced in the compressed photoperiod. After the temperature elevation, GSI, T, 11-KT and E2 fluctuated more in the compressed photoperiod, while in the natural photoperiod, E2 declined, and GSI, T and 11-KT increased. Spawning was advanced by 1 month in the compressed photoperiod compared to the natural photoperiod. Temperature elevation led to higher levels, earlier peaks and declines of T, 11-KT or E2 in both photoperiods, and advanced spawning by 1.5 months in the compressed photoperiod compared to the natural photoperiod. Temperature elevation also led to increased ovulation recruitment and increased cumulative weight of spawned eggs in the natural photoperiod. Compressing the natural photoperiod and elevating temperature can thus advance sexual maturation and spawning in lumpfish females. Due to the lower amounts of spawned egg weights in the high temperature compressed photoperiod, further studies on effects of photoperiod and timing of temperature manipulations on spawning, fecundity and egg quality could optimize the photothermal manipulations on lumpfish broodstock. [ABSTRACT FROM AUTHOR]

There is a growing interest in Atlantic salmon (Salmo salar) aquaculture to extend the time fish are reared in freshwater (FW) recirculating aquaculture systems (RAS), producing larger FW salmon that can then be induced to undergo smoltification before transfer into marine net pens for grow‐out and harvest. Smolts can be produced by photoperiod (PT) manipulation in RASs, but little is known about how delaying smoltification to larger body sizes affects susceptibility to elevated CO2 levels (hypercapnia), which can occur at high stocking densities in FW RAS or during transport from FW RAS rearing facilities to marine net pens. To address this, Atlantic salmon were reared from hatch to one of three different sizes (~230, ~580, or ~1300 g) in FW (3 ppt) under continuous light (24:0, light:dark). Once fish reached the desired sizes, a group of salmon were maintained on continuous light 24L:0D to serve as a control salmon. A second group of salmon were exposed to 8 weeks of 12L:12D and then to 4 weeks of 24L:0D to serve as PT treatment salmon, which is the PT manipulation commonly used in Atlantic salmon aquaculture to induce smoltification. At the end of PT manipulation, both control and PT treatment salmon were exposed to 0% or 1.5% CO2 (30 mg/L) for 96 h in FW and then transferred to air‐equilibrated seawater (SW, 35 ppt, normocapnia). Salmon were sampled at the end of the 96‐h FW CO2 exposure and at 24 h and 7 days in SW for measurements of blood ion/acid–base status, muscle water content (MWC), and gill and kidney Na+/K+ ATPase (NKA) activity. Exposure to 96 h of CO2 in FW resulted in acid–base disturbances in fish from all three size classes, with decreases in blood pH and increases in blood PCO2 and plasma [HCO3−] but no mortality. Despite these large acid–base disturbances in FW, after transfer to normocapnic SW, there were no significant effects of CO2 exposure on extracellular blood pH, intracellular red blood cell pH, or plasma osmoregulatory status for all three sizes of post‐smolt salmon. In general, SW transfer was associated with significant increases in plasma ions and osmolality, as well as gill and kidney NKA activity after 24 h and 1 week in SW with no significant impacts between different sizes of salmon. Thus, exposure to 30 mg CO2/L that mimics levels experienced during transport from FW RAS to an SW transfer site may have minimal effects on Atlantic salmon smolts up to 1300 g. [ABSTRACT FROM AUTHOR]

We analyze the incentives for innovation in salmon farming. To limit environmental hazards, entry into the industry is regulated. The direction of technical change can involve innovations that either enhance profitability or reduce environmental hazards. We then pose the following research question: How should innovation policy be designed to obtain the right balance between profitability-enhancing and environmental-hazard-reducing innovation? Two key results emerge: First, adoption of the latest environmental-hazard-reducing technology should be subsidized or mandated, as the individual salmon farmer does not internalize the positive effect that such adoption has on other farms. Furthermore, regulators should also consider subsidizing environmental-hazard-reducing research and development (R&D), but not profitability-enhancing R&D. With entry regulation, innovators strategically seek to influence the regulator to issue more harvesting licenses. This increases the incentives to perform profitability-enhancing innovation, making subsidies to this kind of innovation superfluous. [ABSTRACT FROM AUTHOR]

Future growth of Atlantic salmon (Salmo salar L.) in Norway is tied to finding solutions for major ecological challenges connected to salmon lice, escapees, and nutrient emissions from sea cages. At the same time, nutrient-rich sludge from salmon production comprises a valuable resource for the cultivation of lower trophic species using an integrated multi-trophic aquaculture (IMTA) approach. This study aimed to quantify the sedimentation of aquaculture sludge under sea cages of an Atlantic salmon aquaculture site and to qualify the composition of this sludge. Additionally, the study evaluated the hypothetical use of sludge from sea-based aquaculture as a feed source for polychaetes Hediste diversicolor. Using sediment traps, sludge samples were collected under two different Atlantic salmon sea cages, at two different depths, and three different sampling dates. Subsequently, they were quantified, and their composition was assessed with regards to carbon (C), nitrogen (N), phosphorus (P), lipid, fatty acid (FA), protein, amino acid (AA), and ash content as well as elemental ratios and composition of FAs and AAs. The quantity of collected sludge was significantly different between sea cages, with a strong positive correlation between feed input and collected sludge (R2 = 0.98, p < 0.05). Sampling depth did not affect the quantity of collected sludge in the sediment traps (2215 ± 480 mg DW day−1), and no significant difference in sedimented sludge as a proportion of theoretically produced sludge (12.94 ± 2.16%) was found when comparing the different cages and sampling depths. Furthermore, the composition of collected sludge was similar at all sampling points. The overall nutritional value was lower compared to sludge from land-based aquaculture; regardless, sludge from sea-based salmon production can in theory be considered a potential feed resource to be used for the production of polychaetes H. diversicolor. [ABSTRACT FROM AUTHOR]

Gill disease is a major threat to aquaculture of Atlantic salmon, with an unknown and likely underestimated contribution from cnidarians such as jellyfish and biofouling hydroids. To better understand the risk and thus enable mitigation, technology for the certain identification of cnidarian-related gill damage is needed. We used the hydroid Ectopleura larynx in a case study to determine whether the exposure of salmon to nematocyst-bearing hydrozoans can be deducted via non-destructive PCR-based methods. In a field experiment, we evaluated (i) whether swabbing the inside of the gill operculum in farmed Salmo salar and subsequent PCR analysis can provide quantifiable information about the presence of E. larynx material in the gill chamber and, if so, (ii) whether the screening results correlate with histological assessments of gill damage. The developed PCR methods were able to detect the presence of biofouling hydroids in ambient water. However, despite exposure to suspended hydroid particle concentrations that did result in gill damage in some salmon, quantitative PCR results did not correlate with histological gill assessments. For opercular swabs to serve as a diagnostic tool for detecting biofouling-mediated gill damage in live salmon, increased specificity of genetic markers and improved sampling methods are needed. Animal trial permit no. 24252 (granted 06.07.2020, Norwegian Food Safety Authority). [ABSTRACT FROM AUTHOR]

Male postsmolt maturation ("jacking") is undesired in Atlantic salmon aquaculture due to economic and welfare impacts. Unfortunately, incidence of jacking has increased linked to intensive rearing conditions. This study subjected 1000 salmon (52.1 ± 5.2 g) to one of two temperatures (15, 12.5°C) and one of two photoperiods (constant light‐LL, a 5‐week LD12:12 winter signal regime‐WS) to assess their effects on spermatogenesis regulation. Indicators included testis histology images, mRNA transcription of gonadotropin receptors for follicle‐stimulating hormone (fshr) and luteinizing hormone (lhr), and of factors regulating spermatogenesis like anti‐Müllerian hormone (amh), gonadal‐soma‐derived factors 1 and 2 (gsdf1 and gsdf2), and insulin‐like growth factor‐3 (igf3). High temperature (15°C) induced early testis development processes irrespective of photoperiod, evidenced by presence of type B spermatogonia before clear increases in testis size or any transcriptional changes. The winter signal at 15°C caused a synchronized onset of spermatogenesis not present under constant light. This was evidenced by a pronounced downregulation of the spermatogenesis‐inhibiting factor amh and a clear upregulation in the stimulating factor igf3. Consequently, combining high temperatures with winter signal regimes pose risk; high temperature can stimulate early cellular/endocrine processes of spermatogenesis, which can later be synchronized in the population by an increase in daylength. [ABSTRACT FROM AUTHOR]

Outbreaks of furunculosis cause significant losses in salmonid aquaculture worldwide. With a recent rise in antimicrobial resistance, regulatory measures to minimize the use of antibiotics in animal husbandry, including aquaculture, have increased scrutiny and availability of veterinary medical products to control this disease in production facilities. In such a regulatory environment, the utility of autogenous vaccines to assist with disease prevention and control as a veterinary-guided prophylactic measure is of high interest to the producers and veterinary services alike. However, evolving concepts of epidemiological units and epidemiological links need to be considered during approval and acceptance procedures for the application of autogenous vaccines in multiple aquaculture facilities. Here, we present the results of solid-state nanopore sequencing (Oxford Nanopore Technologies, ONT) performed on 54 isolates of Aeromonas salmonicida ssp. salmonicida sampled during clinical outbreaks of furunculosis in different aquaculture facilities from Bavaria, Germany, from 2017 to 2020. All of the performed analyses (phylogeny, single nucleotide polymorphism and 3D protein modeling for major immunogenic proteins) support a high probability that all studied isolates belong to the same epidemiological unit. Simultaneously, we describe a cost/effective method of whole genome analysis with the usage of ONT as a viable strategy to study outbreaks of other pathogens in the field of aquatic veterinary medicine for the purpose of developing the best autogenous vaccine candidates applicable to multiple aquaculture establishments. [ABSTRACT FROM AUTHOR]

Objective: There is an impetus for increasing Lumpfish Cyclopterus lumpus hatchery production and rearing efficiency due to the high demand for their usefulness as cleaner fish in salmonid ocean farming. One production bottleneck is the loss of juvenile fish due to aggressive behaviors, including cannibalism. Understanding which factors exacerbate Lumpfish aggression and providing mitigation guidelines to aquaculturists are warranted. Methods: Two experiments were conducted for an 8‐week period in 2022 in 3‐L aquaria with different juvenile size‐classes (4 and 11 g) subjected to three rearing densities (40, 65, and 90 g/L) under different photoperiod regimes (12 h light : 12 h dark [113 lx]; 24 h light : 0 h dark [21 lx]; and 24 h light : 0 h dark [302 lx]), resulting in nine experimental treatments. Survival, growth, and aggression (occurrence and severity of caudal fin nipping) were evaluated. Result: For 4‐g Lumpfish, light and density significantly affected growth (weight gain and specific growth rate), while an interaction between light and density significantly affected the occurrence of caudal fin nipping but not the degree of fin nipping or survival. None of the tested variables significantly affected 11‐g fish. Generally, a trend toward increased caudal fin nipping occurred in smaller fish (~45% occurrence in 4‐g fish vs. ~20% in 11‐g fish), indicating that cannibalism may be even greater when Lumpfish are smaller than 4 g but abates as the fish grow. Conclusion: Our findings indicate that manipulation of lighting at rearing densities of up to 90 g/L can be used to control growth rates in small Lumpfish, often without resulting in increased fish aggression. For small (~4‐g) Lumpfish, constant low light intensity in combination with a low (40‐g/L) rearing density is recommended for reducing growth and caudal fin nipping. However, as Lumpfish grow, these variables are less effective at manipulating fish growth. Impact statementManipulation of lighting at rearing densities of up to 90 g/L can be used to speed up or slow down growth in small juvenile Lumpfish, often without resulting in greater fin nipping. Such findings may aid in increasing juvenile Lumpfish hatchery production. [ABSTRACT FROM AUTHOR]

Introduction: With the continuous growth of Atlantic salmon (Salmo salar L.) aquaculture, appropriate management of nutrient-rich waste streams from both land- and sea-based production has become increasingly important. Following a circular approach, nutrients contained in aquaculture sludge can be utilized for biomass production of the polychaete Hediste diversicolor. While the potential for upcycling nutrients has been established previously, this study aimed to assess nutrient flows in H. diversicolor fed aquaculture sludge as understanding these will be crucial for optimizing future large-scale production of this species. Materials and methods: We investigated the effect of low and high feed supply of smolt sludge on the nutrient flows of carbon (C), nitrogen (N), and phosphorus (P) in H. diversicolor on an individual level. Hereby we assessed ingestion, defecation, excretion, respiration, and uptake for growth. Results and discussion: Nutrient flows differed between the nutrients C, N, and P in the high feed supply group where C uptake for growth was significantly higher than N and P uptake, and N uptake was significantly higher than P uptake. In contrast, no significant differences were observed in the low feed supply group. In the high feed supply group, most of the ingested C, N, and P by H. diversicolor was allocated to uptake for growth (76% C, 83% N, 85% P) with smaller proportions allocated to defecation (7% C, 7% N, 11% P) and respiration/ excretion (18% C, 9% N, 5% P). The results from the low feed supply group suggest insufficient nutrient supply as most ingested C was allocated to respiration (84%), while most N was expended on uptake for growth (45%), and ingested P was either taken up for growth (58%) or spent on defecation (34%). Overall, nutrient uptake reflected the smolt sludge composition rather than nutrient requirements for H. diversicolor, which may be a short-term effect and needs to be investigated further. The flow of nutrients was strongly affected by feed supply, as ingestion, defecation, excretion, and uptake for growth were significantly higher in the high feed supply group than in the low feed supply group. [ABSTRACT FROM AUTHOR]

The genome editing technology CRISPR is described as a technological game-changer because of its flexibility and precision, and as an ethical game-changer due to its ability to engineer traits in living organisms without crossing species, avoiding a significant objection to genetically modified organisms (GMOs). In salmon farming, applications of CRISPR in breeding hold the promise of handling environmental and fish welfare challenges yet require social acceptance. Adopting an empirical bioethics framework, this stakeholder interview study shows that respecting species borders is important, but not decisive, for acceptance among Norwegian stakeholders. The main objections are based on moral reflections about technology use and outcomes. These reflections combine principles and pragmatic deliberations of moral costs and benefits, suggesting that CRISPR applications with environmentally and ethically significant benefits can be socially acceptable. This indicates that the game-changing potential of CRISPR relies on the characteristics of the editing and the context in which the application takes place. [ABSTRACT FROM AUTHOR]

According to Chilean legislation, a salmonid concession holder must choose between two mutually exclusive stocking density systems: Stocking Reduction Percentage (SRP) or Stocking by Density. This study identifies the main determinants in the choice of stocking system and estimates their marginal effects. The results suggest that if the previously stocked species is Atlantic salmon (Salmo salar), the probability of stocking by SRP increases by 36.6%. On the other hand, a high and medium environmental rating (determined according to mortality, use of antibiotics, and pharmacological products during the previous productive cycle) has a negative effect. At the same time, a lower rating positively impacts the choice of SRP. Whatever the selection, obtaining a poor biosecurity classification should not necessarily be interpreted as a sanction due to the fact the salmonid concession holder simply has the option to choose the other method, which would deem the policy of regulatory authority meaningless from this perspective. [ABSTRACT FROM AUTHOR]

Background: The salmonid pathogen Flavobacterium psychrophilum poses a significant economic threat to global aquaculture, yet our understanding of its genetic and phenotypic diversity remains incomplete across much of its geographic range. In this study, we characterise the genetic and phenotypic diversity of 70 isolates collected from rainbow trout (Oncorhynchus mykiss) and brown trout (Salmo trutta m. fario) from fish farms in the Czech Republic between 2012 and 2019 to compare their genomic content with all draft or complete genomes present in the NCBI database (n = 187). Results: The Czech isolates underwent comprehensive evaluation, including multiplex PCR-based serotyping, genetic analysis, antimicrobial resistance testing, and assessment of selected virulence factors. Multiplex PCR serotyping revealed 43 isolates as Type 1, 23 as Type 2, with sporadic cases of Types 3 and 4. Multi-locus sequence typing unveiled 12 sequence types (ST), including seven newly described ones. Notably, 24 isolates were identified as ST329, a novel sequence type, while 22 were classified as the globally-distributed ST2. Phylogenetic analysis demonstrated clonal distribution of ST329 in the Czech Republic, with these isolates lacking a phage sequence in their genomes. Antimicrobial susceptibility testing revealed a high proportion of isolates classified as non-wild type with reduced susceptibility to oxolinic acid, oxytetracycline, flumequine, and enrofloxacin, while most isolates were classified as wild type for florfenicol, sulfamethoxazole-trimethoprim, and erythromycin. However, 31 isolates classified as wild type for florfenicol exhibited minimum inhibitory concentrations at the susceptibility breakpoint. Conclusion: The prevalence of the Czech F. psychrophilum serotypes has evolved over time, likely influenced by the introduction of new isolates through international trade. Thus, it is crucial to monitor F. psychrophilum clones within and across countries using advanced methods such as MLST, serotyping, and genome sequencing. Given the open nature of the pan-genome, further sequencing of strains promises exciting discoveries in F. psychrophilum genomics. [ABSTRACT FROM AUTHOR]

Lumpfish (Cyclopterus lumpus) are used as cleaner fish in Atlantic salmon (Salmo salar) aquaculture as one of multiple control measures against salmon lice (Lepeophtheirus salmonis). Numerous studies have documented weight as an important factor for characterising the cleaning efficacy of individual lumpfish. Hence, the efficacy of lumpfish in fish farms depends on the size at stocking and the weight development over time. Here, we aimed to quantify how weight developed over time for lumpfish deployed in salmon farming sea cages in Norway through modelling the daily growth rate. We found that the coefficient of variation for lumpfish weight increased over time, implying that the standard deviation increased more than the expected weight. The data thus showed heterogeneous growth for lumpfish in salmon farming cages, where some individuals exhibited no apparent growth, and others significant proliferation. We found that the daily growth rate was best described as bell-shaped functions of weight and temperature, consistent with a sigmoid-shaped growth curve and an optimal temperature around 10 °C. These results allow for more realistic modelling of the efficacy of lumpfish in controlling salmon lice in fish farms, as one can combine estimates of weight-dependent cleaning efficacy with weight development over time. [ABSTRACT FROM AUTHOR]

The demand for novel tissue grafting and regenerative wound care biomaterials is growing as traditional options often fall short in biocompatibility, functional integration with human tissue, associated cost(s), and sustainability. Salmon aquaculture generates significant volumes of waste, offering a sustainable opportunity for biomaterial production, particularly in osteo-conduction/-induction, and de novo clinical/surgical bone regeneration. Henceforth, this study explores re-purposing salmon waste through a standardized pre-treatment process that minimizes the biological waste content, followed by a treatment stage to remove proteins, lipids, and other compounds, resulting in a mineral-rich substrate. Herein, we examined various methods—alkaline hydrolysis, calcination, and NaOH hydrolysis—to better identify and determine the most efficient and effective process for producing bio-functional nano-sized hydroxyapatite. Through comprehensive chemical, physical, and biological assessments, including Raman spectroscopy and X-ray diffraction, we also optimized the extraction process. Our modified and innovative alkaline hydrolysis–calcination method yielded salmon-derived hydroxyapatite with a highly crystalline structure, an optimal Ca/P ratio, and excellent biocompatibility. The attractive nano-scale cellular/tissular properties and favorable molecular characteristics, particularly well-suited for bone repair, are comparable to or even surpass those of synthetic, human, bovine, and porcine hydroxyapatite, positioning it as a promising candidate for use in tissue engineering, wound healing, and regenerative medicine indications. [ABSTRACT FROM AUTHOR]

Antibiotics can be introduced from aquaculture facilities into marine sediments, where they may affect benthic communities and generate antimicrobial resistance (AMR). Antibiotics can be used in tandem with antiparasitics, and the effects of their combined usage could affect AMR patterns and transmit antibiotic resistance genes. This study compiles patterns of antibiotic and antiparasitic drug usage from 2016 to 2021 in British Columbia, New Brunswick, Newfoundland and Labrador, and Nova Scotia (Canada) and compares them internationally. There is an overall reduction in rates of antibiotic use per fish produced in Canadian aquaculture sites from 2016 to 2021. Compared to other salmon-producing countries, Canadian antibiotic rates per tonne of fish are lower than in Chile, but higher, on average, than in Norway and Scotland. Florfenicol (FLO) and oxytetracycline (OTC) are the prevalent antibiotics used in most salmon-producing countries, including Canada. We also note that <30% of sites used two drugs per year and <18% of sites used three drugs, with most of these sites using one antibiotic and one antiparasitic. There is an increase in FLO and a decrease use in OTC use in Canada, which could be positive environmentally considering FLO's lower dose and environmental persistence. The east and west coasts show comparable antibiotic rates, with an average rate of 78 mg/kg in BC and 76 mg/kg in the Atlantic provinces; however, they have differences in the type of antibiotic (average use of OTC: BC 38 mg/kg vs. Atlantic 214 mg/kg; average use of FLO: BC 40 mg/kg vs. Atlantic 10 mg/kg). Other distinctions between coasts include variation in the timing of treatments, with seasonal use in the Atlantic provinces (May–November) and year-round use in BC. This pattern is likely influenced by differences in water temperature and, subsequently, potential susceptibility to aquatic diseases. Disease prevalence and veterinarian choice/preferred treatments are factors that, we hypothesize, may impact treatment choice; however, additional information is required to adequately comment on this point. This data compilation includes spatial descriptions that could be used for area prioritization in future studies. [ABSTRACT FROM AUTHOR]

The diversity of Tenacibaculum maritimum in Chile remains poorly understood, particularly in terms of antigenic and genetic diversity. This information is crucial for the future development of a vaccine against tenacibaculosis and would increase understanding of this important fish pathogen. With this aim, the biochemical, antigenic, and genetic characteristics were analysed for 14 T. maritimum isolates, recovered from diseased Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss) farmed in Chile between 1998 and 2022. Biochemical analysis showed a homogeneity among all the Chilean T. maritimum isolates and all four other strains included for comparison purposes. Serological characterization using dot‐blot assaying revealed antigenic heterogeneity with the use of unabsorbed antisera. The majority of isolates showed cross‐reactions, identifying three main serological patterns. When the PCR‐based serotyping scheme was performed, the existence of antigenic heterogeneity was confirmed. Four Atlantic salmon isolates were 4–0; and most isolates, including the rainbow trout isolate, were 3–1 (n = 9). A turbot (Scophthalmus maximus) isolate was 1–0. Using an existing Multilocus Sequence Typing system, two newly identified sequence types (ST193 and ST198) in the database were detected. ST193 encompassed nine isolates obtained from Atlantic salmon and rainbow trout, while ST198 regrouped four isolates, all retrieved from diseased Atlantic salmon in 2022. These findings highlight significant antigenic and genetic diversity among the Chilean isolates. This information is useful for epizootiology and the selection of suitable candidate strain(s) for vaccine development against tenacibaculosis caused by T. maritimum in Chilean salmon farming. [ABSTRACT FROM AUTHOR]

The present study was conducted to determine the swimming ability of adults and copepodites of Caligus rogercresseyi at three different water flow speeds, considering the presence or absence of attractants such as light and fish (Salmo salar). A total of 360 gravid females, 360 adult males, and 720 copepodites were randomly selected from a sea lice hatchery and distributed into groups. Each group was placed in a plastic bucket within a tank, and exposed or not to two attractants (light or host fish) at different water flow speeds (0, 1 and 2 cm/s). The results showed higher migration of adults and copepodites in the presence of light than in its absence (P < 0.05); however, no significant differences related to sea lice swimming performance were found in the presence or absence of fish (P > 0.05). Water flow speed had no effect on either variable (P > 0.05). In the current study, adult C. rogercresseyi demonstrated superior swimming capabilities compared with copepodites. [ABSTRACT FROM AUTHOR]

One of the reasons why GMOs have met public resistance in the past is that they are perceived as "unnatural". The basis for this claim has, in part, to do with crossing species boundaries, which is considered morally objectionable. The emergence of CRISPR is sometimes argued to be an ethical game-changer in this regard since it does not require the insertion of foreign genes. Based on an empirical bioethics study including individual interviews and focus groups with laypeople and other stakeholders, this article analyses the normative role of appeals to naturalness in discussions about the moral acceptability of using CRISPR in salmon farming. It discusses two dimensions of naturalness found in the material– living by species-specific nature and being unaffected by humans– and argues that these dimensions put down criteria for the application of CRISPR that lead to a conflict between our moral duties towards the farmed salmon and those we hold towards the wild salmon as a threatened species. It also points to a paradox which is likely to gain traction with further climate change and biodiversity loss, namely that while nature, understood as that which is unaffected by humans, is presented as an ideal, conserving nature in its pristine state may rely on technology and human intervention. [ABSTRACT FROM AUTHOR]

Within the framework of Ecosystem Approach to Aquaculture (EAA), ecological carrying capacity (ECC) is a key concept that helps to determine the upper limit of production without compromising ecosystem functioning. The implementation of ECC is complex as ECC differs between type of farms and location and standardised methods should be developed for management. There is therefore a clear need for operational indicators. The objectives of this paper were: (1) to carry out a systematic literature review on shellfish and seaweed aquaculture‐environment interactions to list the most used environmental indicators, (2) to classify the indicators according to the effects they measure (i.e., benthic, water quality, food web interactions, cultured organism health, resource use) and the scale at which they are applied, and (3) to assess their potential based on four indicator criteria categories: sensitivity, accuracy and precision, feasibility and utility, and ecosystem‐level scalability. Overall, indicators describing benthic effects were the most highly cited and scored. Indicators identified for bivalve and seaweed culture were discussed and compared to previous work on salmon aquaculture indicators to highlight similarities and differences across trophic levels. In addition, questions related to the challenges of ECC indicators implementation were presented to a panel of experts. The scoring and consultation provided the source of discussion on environmental management consistent with EAA. [ABSTRACT FROM AUTHOR]

Mass mortality events (MMEs) are defined as the death of large numbers of fish over a short period of time. These events can result in catastrophic losses to the Atlantic salmon aquaculture industry and the local economy. However, they are challenging to understand because of their relative infrequency and the high number of potential factors involved. As a result, the causes and consequences of MMEs in Atlantic salmon aquaculture are not well understood. In this study, we developed a structural network of causal risk factors for MMEs for aquaculture and the communities that depend on Atlantic salmon aquaculture. Using the Interpretive Structural Modeling (ISM) technique, we analysed the causes of Atlantic salmon mass mortalities due to environmental (abiotic), biological (biotic) and nutritional risk factors. The consequences of MMEs were also assessed for the occupational health and safety of aquaculture workers and their implications for the livelihoods of local communities. This structural network deepens our understanding of MMEs and points to management actions and interventions that can help mitigate mass mortalities. MMEs are typically not the result of a single risk factor but are caused by the systematic interaction of risk factors related to the environment, fish diseases, feeding/nutrition and cage‐site management. Results also indicate that considerations of health and safety risk, through pre‐ and post‐event risk assessments, may help to minimize workplace injuries and eliminate potential risks of human fatalities. Company and government‐assisted socio‐economic measures could help mitigate post‐mass mortality impacts. Appropriate and timely management actions may help reduce MMEs at Atlantic salmon cage sites and minimize the physical and social vulnerabilities of workers and local communities. [ABSTRACT FROM AUTHOR]

Increased knowledge of heritable traits in Atlantic Salmon (Salmo salar) is important to overcome bottlenecks in salmonid aquaculture. Atlantic salmonid populations, both landlocked and anadromous, represent an interesting model to gain insight into anadromy related traits, most notably, the probability to smoltify. While a previous study has identified several genomic regions diverging between anadromous and landlocked populations across the species range, the present study explores these data further with the aim to uncover if some of these genomic regions are linked to beneficial genetic traits associated with smoltification. In this study 17 of these loci were monitored in 669 anadromous salmon originating from 36 full-sibling families that had been reared under common garden conditions. The Smolt Index was calculated, using multiple visual markers, and provided a means of assessing smoltification stage. One SNP, located in Ssa04, showed a significant association with probability to smoltify, where individuals homozygous for the landlocked variant (LL) displayed a decrease in probability of smoltifying after one winter when compared with the homozygous for the anadromous variant (AA). This effect was independent of individual fish size. A separate common garden study comprising 200 individuals from either anadromous or landlocked strains showed that expression levels of ncor1, a thyroid mediator hormone located on the same chromosomal region (Ssa04), were significantly reduced in landlocked individuals post smoltification but remained constant in their anadromous counterparts. This study therefore suggests that while size is still the most important trigger for the induction of smoltification, there may also be an additional genetic component or trigger that has been 'lost' during the years deprived of SW transfer. In conclusion, the LL genotype identified here could potentially be used by the industry to delay smoltification and may also represent one of the first clues to the genetic regulation of smoltification in Atlantic salmon. [ABSTRACT FROM AUTHOR]

Brewer's spent yeast (BSY), derived from Saccharomyces cerevisiae used in beer production, is a valuable protein source for aquafeeds. Estimations of apparent digestibility coefficients (ADC) for nutrients in BSY are crucial for its inclusion in aquafeeds. ADC estimations for Saccharomyces cerevisiae protein in rainbow are hardly comparable from a methodological point of view, whereas the ADC estimations for BSY protein in Atlantic salmon are only based on stripped feces, which are known to produce underestimations. Therefore, new determinations of ADC of BSY nutrients are necessary for the inclusion of this ingredient in practical diets for salmonids. This study is focused on determining unbiased ADC values for protein and energy from BSY in juvenile Salmo salar. To reduce systematic biases, fecal samples were collected using stripping and decantation methods, which are known to produce under-and overestimations, respectively. 780 fish (25.16± 4.88g) were stocked in six tanks. A reference diet (50% protein, 20% lipid, 1% Cr2O3) was provided to three tanks, and a test diet (70,30 reference diet to BSY) to the other three. ADC for BSY protein was 84.70± 1.04% (decantation) and 70.50± 4.03% (stripping). For gross energy, stripped feces yielded an ADC of 52.04± 5.30%, while decantation resulted in 63.80± 1.17%. Thus, ADC estimates were taken as the average of the stripping-value and the decantation-value, resulting in 77.6% for BSY crude protein, which is appreciably higher than previously measured values in S. salar fed undisrupted S. cerevisiae, and in 57.9% for gross energy. [ABSTRACT FROM AUTHOR]

In this study, we explored the effects of chronic stress on lumpfish (Cyclopterus lumpus) physiological, immune response, health, and plasma free amino acids. 3 groups of lumpfish were exposed to 1-minute air exposure. 1 group was exposed to stress once per week, a second group exposed 2 times per week, and a third group exposed 4 times per week. The present study revealed significant alterations in immunity and increased nutritional demands, particularly the branched chain amino acids and lysine. Cortisol levels fluctuated, with significantly higher levels halfway through the experiment on the groups that were stressed more often. Though, by the end of the experiment, there were no significant differences in cortisol levels between groups. Regardless of stress exposure, cataract developed in virtually all sampled fish, pointing toward a potential dietary imbalance. A transient immunomodulation of stress was visible. While in early stages stress had an immune enhancing effect, as seen by the increase in plasma nitric oxide and peroxidase in the group most frequently exposed to stress, these differences were not apparent by the end of the experiment. Additionally, the worst health condition was found in this group. Our results underscore the complex interplay between stress, immunity and nutrition, highlighting the need for tailored dietary strategies and improved rearing practices. [ABSTRACT FROM AUTHOR]

In recent years, the salmon farming industry has grown significantly worldwide, and in the Faroe Islands, it has become a major industry with an annual production of over 94,000 tonnes, yielding 24% of the GDP. According to environmental regulations, the ocean floor is monitored during every production cycle at all farming sites, involving macrofaunal, sensory, and chemical analyses. However, the impact of farming activity on microorganisms in the Faroe Islands remains unknown. This study aimed to assess the impact of Atlantic salmon farming on benthic microbial communities, giving a better understanding of the effects on the foundation of the benthic food web and to assess if these are more prone to environmental impact than traditional macrofaunal biomonitoring. Sediment cores were sampled along a transect from directly below the salmon cages to a background reference site. The sampling occurred prior to the release of salmon into the cages ('before stocking') and immediately before the salmon were harvested ('peak biomass'). The 16S rRNA (V4-V5) gene was sequenced on an Illumina MiSeq from our sediment samples at the surface, 3 cm, and 10 cm depth. Significant shifts in microbial community composition were observed between 'before stocking' and 'peak biomass', as well as between different depth layers. Microbial diversity increased with increasing distance from the cages and was at its highest 'before stocking', indicating a significant impact of the salmon farming on the microbial community structure. In contrast to the regularly executed environmental monitoring, the results from this study showed an impact on the sediments by the salmon farming, underlining the powerful alternative of DNA-metabarcoding when biomonitoring an aquaculture area. [ABSTRACT FROM AUTHOR]

This study presents an Agent-Based Model (ABM) simulation to assess the impact of varying migration routes on sea lice (Caligus clemensi) infestation levels in juvenile wild sockeye salmon (Oncorhynchus nerka) in the Discovery Islands, British Columbia, Canada. This research highlights the importance of migratory routes in determining the extent of exposure to sea lice originating from nearby salmon farms. Three northward out-migration routes were modelled, each exposing the fish to different levels of infestation pressure based on proximity to salmon farms. The ABM incorporates spatially explicit migration patterns of juvenile sockeye salmon using a detailed raster map of the Discovery Islands. Key variables such as swimming speed, progression rate, and infestation levels were integrated into the model, offering a comprehensive analysis of migration and infestation dynamics. The study revealed that infestation rate is highly variable, depending on migration routes. Specifically, salmon traveling longer migration routes with lower infestation pressure may experience higher sea lice loads compared to those on shorter routes with higher infestation pressure. This underscores the role of low infestation pressures and the critical influence of swimming speed, which affects exposure time, and thus infestation rates. Additionally, the study conducted a sensitivity analysis to understand the influence of various parameters on infestation rates. This analysis highlighted the importance of swimming speed and progression rate, particularly in routes closer to the farms. The findings suggest that slower swimming speeds and meandering routes increase exposure to lice, thereby elevating infestation levels. The research contributes to understanding the dynamics of sea lice transmission and its relationship with salmon migration patterns. It underscores the necessity of considering migratory routes and farm proximity in managing and mitigating the impact of sea lice infestation on wild salmon populations. This study's insights are crucial for developing strategies to balance aquaculture practices with the conservation of wild salmon. [ABSTRACT FROM AUTHOR]

Simple Summary: This study focuses on how Tasmanian sea-farmed Atlantic salmon respond to a natural infection with a parasite that causes amoebic gill disease (AGD), a major health issue for salmon globally. The research aimed to understand the progression of the disease by examining the salmon's gills at different stages of the outbreak and evaluating their response to freshwater treatment. The study employed both macroscopic and microscopic examinations of gills, as well as molecular tools to measure the abundance of amoebae and the expression of specific genes that indicate inflammation. Key findings showed a strong correlation between different measures of gill health and significant differences between distinct stages of AGD. After treatment, a varied response among the fish was observed, indicating that management strategies need to account for individual genetic, environmental, and health factors. The expression patterns of some inflammation-related genes highlight their potential as biomarkers for early detection of gill damage in salmon aquaculture worldwide. The results of this research are important as they can help develop better ways to detect and manage this disease early, potentially reducing losses in salmon farming and ensuring the sustainability of this vital food resource. Gill health has become a significant global challenge for Atlantic salmon (Salmo salar) aquaculture, particularly during the marine phase of farming. The increasing prevalence of gill pathologies has been linked to rising seawater temperatures, underscoring the need to evaluate existing tools for monitoring gill health and to develop novel approaches for early detection. In this study, we investigated the gill responses of commercially farmed Atlantic salmon to natural infection with Neoparamoeba perurans during an outbreak of amoebic gill disease (AGD) in Tasmania. Our focus spanned the low AGD prevalence, high AGD prevalence, and post-freshwater treatment stages of the outbreak. Evaluations of gill tissue included assessments of the gross AGD score, histopathological score, abundance of N. perurans (measured by 18S rRNA gene expression), and expression levels of inflammation-related transcripts. We demonstrated a strong correlation between different measures of AGD-related gill pathology and significant differences between distinct stages of the N. perurans outbreak. Post-treatment, fish exhibited considerable variability in their responses to the freshwater bath, highlighting the necessity for personalized management strategies that consider genetic, environmental, and health status factors. The expression patterns of angiogenin-1 (ANG1) and complement C1q tumour necrosis factor-related protein 3-like (C1QTNF3) emphasize their potential as biomarkers for early detection of gill damage in salmon aquaculture worldwide. [ABSTRACT FROM AUTHOR]

Particulate calcium oxide (CaO) has been successfully used for the control of sea urchin and starfish populations. Recent studies have proven its efficacy in killing planktonic copepods, making it a promising and cheap option for salmon louse control in the Atlantic salmon (Salmo salar) farming industry. Additionally, preliminary laboratory tests demonstrated that exposure to 0.2 g/L-0.6 g/L of fine CaO particles induced significant mortality of salmon louse (Lepeophtheirus salmonis) in the planktonic stages. The present study investigated the effects of water treatment with fine CaO particles [0.2 g/L or 127.4 g/m²; 0.1mm-0.3 mm], conducted twice a week for three consecutive weeks at 5℃ and 12℃ on Atlantic salmon post-smolt in a flow-through system. The study compared mortality rates and histopathology of skin, eyes, gills, and intestines between treated and untreated control salmon. The results indicated that CaO exposure did not induce fish mortality or histopathological damages in the skin, eyes, or intestines. Although there were no significant effects of CaO exposure on gill inflammation or hyperplasia, the exposure did increase the occurrence of gill vascular injuries and necrosis in small portions of the tissue (< 10% of the respiratory gill tissue in most of the samples) by 60% and 35%, respectively. The effect was not modulated by temperature or time. The results indicate that the CaO treatment protocol used in this study is not lethal to Atlantic salmon and is safe for most analyzed tissues. Nonetheless, the induction of vascular damage and necrosis in the gill, albeit in small tissue portions, emphasizes the need for further research. It is crucial to develop a protocol that avoids such lesions, ensuring the secure application of CaO as an antiparasitic treatment in salmon aquaculture. [ABSTRACT FROM AUTHOR]

Infectious salmon anemia virus (ISAV) is an important pathogen in global Atlantic salmon (Salmo salar L.) aquaculture. The existence of both non-pathogenic (ISAV-HPR0) and pathogenic (HPR-deleted ISAV) forms of the virus impacts hatchery management. In November 2016, fish tested positive for ISAV-HPR0 at the National Cold Water Marine Aquaculture Center in Maine. A cohort exposed to the fish testing positive for ISAV were lethally sampled over a 7-month period (February–August 2017). No positive samples were detected during this time. Additional testing aimed to determine the extent of the ISAV infections in the facility's fish and to investigate the water sources as potential virus entry points. Fish testing was designed to detect 2% pathogen prevalence with 95% confidence (assuming diagnostic sensitivity of 85%). Over a three-year period, ISAV-HPR0 was detected in spawning fish annually and once in smolts. Repeat testing of smolts from the affected tank three weeks later failed to detect ISAV-HPR0. Over a one-year period of weekly or biweekly evaluation of the incoming water sources, ISAV was never detected. These findings suggest that ISAV-HPR0 infections in monitored hatchery populations can evade detection and that episodes of high prevalence of ISAV-HPR0 associated with spawning can be highly transient. In both cases, conventional surveillance based on recurrent testing of healthy populations may provide only a very limited indication of the HPR0 status. Instead, targeting surveillance to periods of physiological stress, such as spawning and smoltification, and adjusting the sample sizes to account for a related surge in prevalence, should enhance the detection capacity in hatchery settings while also reducing testing costs. [ABSTRACT FROM AUTHOR]

In marine species with large populations and high dispersal potential, large-scale genetic differences and clinal trends in allele frequency can provide insight into the evolutionary processes that shape diversity. Lumpfish, Cyclopterus lumpus , is found throughout the North Atlantic and has traditionally been harvested for roe and more recently used as a cleaner fish in salmon aquaculture. We used a 70 K SNP array to evaluate trans-Atlantic differentiation, genetic structuring, and clinal variation across the North Atlantic. Basin-scale structuring between the Northeast and Northwest Atlantic was significant, with enrichment for loci associated with developmental/mitochondrial function. We identified a putative structural variant on chromosome 2, likely contributing to differentiation between Northeast and Northwest Atlantic Lumpfish, and consistent with post-glacial trans-Atlantic secondary contact. Redundancy analysis identified climate associations both in the Northeast (N  = 1269 loci) and Northwest (N  = 1637 loci), with 103 shared loci between them. Clinal patterns in allele frequencies were observed in some loci (15%—Northwest and 5%—Northeast) of which 708 loci were shared and involved with growth, developmental processes, and locomotion. The combined evidence of trans-Atlantic differentiation, environmental associations, and clinal loci, suggests that both regional and large-scale potentially-adaptive population structuring is present across the North Atlantic. [ABSTRACT FROM AUTHOR]

The question of whether and to what extent sea‐louse (Lepeophtheirus salmonis) infestations from salmon farms influence wild Atlantic salmon survival has been subject to sustained scientific debate and political controversy. Documenting population‐level effects of sea lice on wild salmon remains inherently challenging.We employ comprehensive sea‐lice data and recreational catch data from Norway to assess the impact of farm sea‐louse infestations on wild salmon catches in different production areas (PAs).Our analysis finds a significant correlation between declines in wild Atlantic salmon catches and increasing amounts of adult female sea lice per km2. The effect is most pronounced in PA 4 on the west coast of Norway, an area within the government's" traffic light" management system where out‐migrating salmon smolts are deemed to face high risk of louse‐induced mortality.Our model predicts below‐average catches when the total sea‐louse load exceeds the limit of 0.1 average adult female sea louse per farmed fish within some production areas. Furthermore, our results indicate that the risk of below‐average catches increases by approximately 47% when salmon farms exceed this limit (estimated risk ratio of 1.47, 95% CI [1.10, 1.96]).Synthesis and applications: Our study expands the existing body of evidence demonstrating a negative association between fish farming and the ecosystem services provided by wild salmon stocks. This has important implications for aquaculture management. First, it shows that farm sea lice directly affect peoples, rights holders and interest groups, such as landowners and anglers, who rely on viable populations of wild salmon. Second, it suggests that a >0.1 sea lice limit may be insufficient to prevent subpar catches in some areas. Furthermore, in the context of allowing further growth in farmed salmon biomass, setting absolute sea‐louse limits for entire production areas may be a more effective regulatory instrument than setting average lice limits per farmed fish. Our findings contribute to advancing a scientific basis for setting appropriate louse limits on farm and area scales. [ABSTRACT FROM AUTHOR]

We hypothesized that removing water from fish muscle homogenate by freeze‐drying might be a cost‐effective way to stabilize nutrients and allow higher temperatures for long‐term frozen storage prior to analytical measurements. To test our hypothesis, fish muscle fillets from lipid‐rich farmed Atlantic salmon (n = 5) and lean wild‐caught European plaice (n = 5) were homogenized and fresh‐frozen at −20 and −80°C. A subset of these samples was freeze‐dried prior to further frozen storage at the respective temperatures. Using validated methods, vitamins, amino acids, and fatty acids were measured after a short time of storage (starting point) and up to 1 year (endpoint), with intermediate analytical checkpoints of 1, 3, and 6 months. Trends in the degradation of certain nutrients during the different frozen storage conditions are discussed. In general, by freeze‐drying fish homogenate samples prior to frozen storage at −20°C for up to 1 year, amino acids, vitamins, and fatty acids were stabilized in both salmon and plaice when compared to wet‐frozen storage of the same samples, and storage at −80°C did not improve preservation of the freeze‐dried samples. For wet‐frozen samples, −80°C would be recommended for 1‐year storage of fillet homogenate samples, even though several nutrients preserved well at −20°C. Practical Application: We present individual nutrient stability profiles in muscle homogenates from fatty fish (salmon) and lean fish (plaice) during different frozen storage conditions over time. Based on these data, freeze‐drying followed by frozen storage at −20°C for at least 1 year could be applied prior to analyses of amino acids, fat‐soluble vitamins, water‐soluble vitamins, and fatty acids. Of note is that freeze‐drying followed by frozen storage before analysis led to slightly increased measurements of several fatty acids in plaice samples, possibly attributable to an increase in dry weight or an enhancement in extraction efficiency through freeze‐drying. [ABSTRACT FROM AUTHOR]