18 results on '"reduced virulence"'
Search Results
2. Ultrastructural Changes of Bacteria in Static Cultures of Yersinia pseudotuberculosis under Long Storage under Conditions of Low Temperature.
- Author
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Somova, L. M., Timchenko, N. F., Lyapun, I. N., Drobot, E. I., Matosova, E. V., and Bynina, M. P.
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YERSINIA pseudotuberculosis , *LOW temperatures , *BACTERIAL cells , *CELL populations , *BACTERIA - Abstract
Electron microscopy study revealed changes in the ultrastructure of bacteria of Yersinia pseudotuberculosis strains characterized by significantly reduced reproductive ability and virulence potential after long-term storage at low temperature of 4-8°C. Most bacterial cells contained dark cytosol with reduced cellular material or empty cytosol, while the cell wall was preserved. The revealed ultrastructural changes in the bacterial cells of the static culture of Y. pseudotuberculosis suggest that storage of strains under low positive temperatures could induce the transition of the majority of bacterial cell population to a dormant, non-cultivated state with a decrease in their virulence. This fact is of great scientific and applied importance in studies of causative agents of saprozoonoses, including pseudotuberculosis, which has the etiopathogenetic background of persistent infection. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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3. A naturally occurring prfA truncation in a Listeria monocytogenes field strain contributes to reduced replication and cell-to-cell spread.
- Author
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Rupp, Sebastian, Aguilar-Bultet, Lisandra, Jagannathan, Vidhya, Guldimann, Claudia, Drögemüller, Cord, Pfarrer, Christiane, Vidondo, Beatriz, Seuberlich, Torsten, Frey, Joachim, and Oevermann, Anna
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GASTROENTERITIS , *LISTERIA monocytogenes , *INTRACELLULAR pathogens , *PHOSPHOLIPASES , *IMMUNOFLUORESCENCE , *HEMOLYSIS & hemolysins , *CATTLE - Abstract
Listeria (L.) monocytogenes is an environmental bacterium that may become an intracellular pathogen upon ingestion to cause gastroenteritis, septicaemia, abortions, and/or fatal infections of the central nervous system. We here describe a L. monocytogenes field strain (JF5171) isolated from a bovine placenta in the context of abortion, which exhibited attenuation in bovine brain-slice cultures. The whole genome of strain JF5171 was sequenced, and the invasion, replication, and intercellular spread of JF5171 were further analyzed by quantification of colony forming units and immunofluorescence studies. Phospholipase and hemolysis activity of JF5171 were also quantified along with transcription levels of actA , hly and prfA . The data obtained were compared to those of the widely used L. monocytogenes reference strain, EGD-e. JF5171 exhibited reduced replication and lower levels of phospholipase and hemolysis activity. Invasion and cell-to-cell spread was strongly decreased compared to EGD-e, and actin polymerization was absent. A frame shift deletion was identified in the JF5171 coding region of the major regulator for virulence, prfA . This resulted in a truncated C-terminus sequence (WEN* vs . WGKLN*). In addition, a point mutation resulted in a lysine to arginine substitution at amino acid position 197. Complementation with prfA from EGD-e and with (EGD-e) prfA -K197N increased the replication and spread efficiency of JF5171. In contrast, complementation with the truncated version of prfA had no effect. Taken together, these results suggest that the truncated C-terminus of prfA considerably contributes to the strongly attenuated phenotype observed in vitro . [ABSTRACT FROM AUTHOR]
- Published
- 2015
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4. Identification and pathogenicity of a variant porcine epidemic diarrhea virus field strain with reduced virulence.
- Author
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Xiangbin Zhang, Yongfei Pan, Dongdong Wang, Xiaoyan Tian, Yanhua Song, and Yongchang Cao
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PORCINE epidemic diarrhea virus , *MICROBIAL virulence , *MICROBIAL virulence genetics , *INTESTINAL diseases , *VETERINARY medicine , *ANIMAL mortality - Abstract
Background: Since 2010, a variant Porcine epidemic diarrhea virus (PEDV), which causes an acute, highly contagious, and devastating viral enteric disease with a high mortality rate in suckling pigs, broke out in China and spread rapidly to neighboring countries, even to the North America. This virus gradually became the main subtype of PEDV worldwide. However, there were no reports of mild pathogenicity of a variant porcine epidemic diarrhea virus in China. Findings: In 2013, a PEDV-positive sample from a sow with very mild clinical sign was used to inoculate in Vero cells to isolate the virus. This PEDV field strain, designated FL2013 strain, was successfully propagated and genetically characterized. The phylogenetic trees based upon either the complete genome or S gene showed that the FL2013 strain belongs to the genogroup G2b. The S gene of FL2013 has a 7-aa deletion (FEKVHVQ) in the C-terminus comparison with the other G2 PEDV sequences. Further comparative pathology study indicated that the FL2013 strain had reduced virulence to newborn piglets. Conclusions: A novel variant PEDV strain FL2013 with reduced virulence, as determined by the pathological study, was identified from east China. This strain is closely related to the genogroup-2 PEDV strains prevalent in the U.S. and China currently, but had a short deletion at the 3'- end of the spike gene. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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5. Colonisation and competition dynamics can explain incomplete sterilisation parasitism in ant-plant symbioses.
- Author
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Tarnita, Corina E., Palmer, Todd M., and Pringle, Robert M.
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COLONIZATION (Ecology) , *COMPETITION (Biology) , *STERILIZATION (Disinfection) , *PARASITISM , *SYMBIOSIS , *MICROBIAL virulence , *ACACIA drepanolobium , *CREMATOGASTER - Abstract
Sterilisation of parasites prevents host reproduction, thereby diverting host resources to their own benefit. Previous theory predicts that parasites should evolve maximum virulence, yet hosts are often incompletely sterilised. Whereas prior attempts to resolve this paradox have sought evolutionary explanations, we present theory and experiments showing that incomplete sterilisation can arise from ecologically driven fluctuations in parasite load. The African ant-plant Acacia drepanolobium reproduced more when occupied by small colonies of the sterilising symbiont Crematogaster nigriceps. In nature, small colonies result from interference competition between ant colonies; these territorial conflicts thus provide intermittent windows of opportunity for host reproduction. Our mean-field model shows that numerical insufficiency of parasites can produce partial sterilisation of host populations, creating the appearance of reduced virulence even if ants have evolved to sterilise completely. This general framework helps explain both the apparent ubiquity of partial sterilisation parasitism and the ability of these symbiotic associations to persist. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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6. Autonomous Virulence Adaptation Improves Coevolutionary Optimization.
- Author
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Cartlidge, John and Ait-Boudaoud, Djamel
- Subjects
MICROBIAL virulence ,COEVOLUTION ,EVOLUTIONARY computation ,MATHEMATICAL optimization ,AUTOMATION ,BIOLOGICAL adaptation ,MACHINE learning - Abstract
A novel approach for the autonomous virulence adaptation (AVA) of competing populations in a coevolutionary optimization framework is presented. Previous work has demonstrated that setting an appropriate virulence, v, of populations accelerates coevolutionary optimization by avoiding detrimental periods of disengagement. However, since the likelihood of disengagement varies both between systems and over time, choosing the ideal value of v is problematic. The AVA technique presented here uses a machine learning approach to continuously tune v as system engagement varies. In a simple, abstract domain, AVA is shown to successfully adapt to the most productive values of v. Further experiments, in more complex domains of sorting networks and maze navigation, demonstrate AVA's efficiency over reduced virulence and the layered Pareto coevolutionary archive. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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7. Reduced expression of virulence factors in multidrug-resistant Pseudomonas aeruginosa strains.
- Author
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Deptuła, Aleksander and Gospodarek, Eugenia
- Subjects
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PSEUDOMONAS aeruginosa , *PHOSPHOLIPASES , *MICROBIAL virulence , *ANTIBIOTICS , *PHENOTYPES - Abstract
MDR Pseudomonas aeruginosa strains are isolated from clinical specimens with increasing frequency. It seems that acquiring genes which determine antibiotic resistance usually comes at a biological cost of impaired bacterial physiology. There is no information on investigations comparing phenotypic differences in MDR and MDS P. aeruginosa strains in literature. The study included 150 clinical P. aeruginosa isolates (75 classified as MDS and 75 as MDR). PFGE analysis revealed five pairs of identical isolates in the group of MDR strains and the results obtained for these strains were not included in the statistical analyses. MDR strains adhered to polystyrene to a lesser extent than MDS strains. The growth rate in the liquid medium was significantly lower for MDR strains. Detectable amounts of alginate were present in the culture supernatants of seven MDS and six MDR strains. The MDR P. aeruginosa strains which were investigated produced significantly lower amounts of extracellular material binding Congo Red, lower lipolytic, elastase, LasA protease, phospholipase C activity and pyocyanin quantity in culture supernatants when compared with MDS strains. No significant differences were observed between MDR and MDS strains in proteolytic activity. In conclusion, the MDR P. aeruginosa strains have impaired virulence when compared to MDS strains. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
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8. SLAVE-MAKER ANT COMPETITION FOR A SHARED HOST AND THE EFFECT ON COEVOLUTIONARY DYNAMICS.
- Author
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Johnson, Christine A.
- Subjects
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ANTS , *COMPETITION (Biology) , *COEVOLUTION , *BIOLOGICAL evolution , *HYMENOPTERA , *INSECT societies , *PREDATION , *SYMMETRY (Biology) , *ANIMAL societies - Abstract
Competition is an important evolutionary force behind population regulation and community structures. The degree of competition symmetry (competition hierarchies) between species determines coexistence, exclusion, or niche differentiation. Intraspecific competition, however, is an important component in dictating levels of symmetry/asymmetry between species and should be accounted for when attempting to understand interspecific evolutionary or ecological outcomes. Some social parasites compete for access to a common host and, thus, adhere to both parasite-host and predator-prey coevolutionary and ecological dynamics. Here I examine tripartite evolutionary dynamics with respect to intraspecific competition of two sympatric slave-making social parasites in the family of ants that conduct "brood raids" on a shared host species and use the captured brood as a functional work force. Slave-makers were challenged with either a conspecific or heterospecific parasite and the impact on hosts and parasites was evaluated. Within-species raiding occurred frequently in the "prudent" slave-maker but was almost nonexistent in the "virulent" slave-maker. Although intraspecific raiding led to larger single prudent slave-maker colonies, the preservation of two independent virulent slave-maker colonies had an early and a more devastating effect on the host. However, in response to synchronized raiding phenologies the prudent slave-maker emerged as the better direct competitor against the virulent slave-maker. Sex ratios were male biased in the virulent slave-maker colonies but numerically equal (hence female biased) in prudent slave-maker colonies. Combined, these results suggest that interspecific parasite interactions have produced ecological shifts in both slave-makers and attenuated the coevolutionary arms race between the prudent slave-maker and the shared host in sympatric populations. [ABSTRACT FROM AUTHOR]
- Published
- 2008
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9. EBR1, a Novel Zn2Cys6Transcription Factor, Affects Virulence and Apical Dominance of the Hyphal Tip inFusarium graminearum
- Author
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Chunzhao Zhao, Cees Waalwijk, Dingzhong Tang, Theo van der Lee, and Pierre J. G. M. de Wit
- Subjects
Physiology ,binuclear cluster ,Apical dominance ,aspergillus-nidulans ,Gene Knockout Techniques ,Fusarium ,Gene Expression Regulation, Fungal ,Inflorescence ,Phylogeny ,Triticum ,Sequence Deletion ,Zinc finger ,0303 health sciences ,neurospora-crassa ,biology ,Virulence ,EPS-2 ,food and beverages ,Zinc Fingers ,General Medicine ,Fungi imperfecti ,Spores, Fungal ,Cell biology ,Gibberella zeae ,Phenotype ,multiple sequence alignment ,saccharomyces-cerevisiae ,aflatoxin biosynthesis ,Green Fluorescent Proteins ,Molecular Sequence Data ,Hyphal tip ,Hyphae ,Microbiology ,Fungal Proteins ,03 medical and health sciences ,Transformation, Genetic ,Aspergillus nidulans ,reduced virulence ,Amino Acid Sequence ,Transcription factor ,030304 developmental biology ,Plant Diseases ,Cell Nucleus ,030306 microbiology ,Bioint Moleculair Phytopathology ,fungi ,Genetic Complementation Test ,gibberella-zeae ,biology.organism_classification ,plant infection ,Laboratorium voor Phytopathologie ,Laboratory of Phytopathology ,Agronomy and Crop Science ,female fertility ,Sequence Alignment ,Transcription Factors - Abstract
Zn2Cys6 transcription factors are unique to fungi and have been reported to be involved in different regulatory functions. Here, we characterized EBR1 (enhanced branching 1), a novel Zn2Cys6 transcription factor of Fusarium graminearum. Knocking out EBR1 in F. graminearum PH-1 caused reduction of both radial growth and virulence. The conidia of knock-out strain PH-1Δebr1 germinated faster than those of wild-type PH-1, but the conidiation of the mutant was significantly reduced. Detailed analysis showed that the reduced radial growth might be due to reduced apical dominance of the hyphal tip, leading to increased hyphal branching. Inoculation assays on wheat heads with a green fluorescent protein (GFP)-labeled PH-1Δebr1 mutant showed that it was unable to penetrate the rachis of the spikelets. Protein fusion with GFP showed that EBR1 is localized in the nucleus of both conidia and hyphae. Knocking out the orthologous gene FOXG_05408 in F. oxysporum f. sp. lycopersici caused a much weaker phenotype than the PH-1Δebr1 mutant, which may be due to the presence of multiple orthologous genes in this fungus. Transformation of FOXG_05408 into PH-1Δebr1 restored the mutant phenotype. Similar to EBR1, FOXG_05408 is localized in the nucleus of F. oxysporum f. sp. lycopersici. Possible functions of EBR1 and its relation with other fungal transcription factors are discussed.
- Published
- 2011
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10. Transformation of Phytophthora capsici with genes for green and red fluorescent protein for use in visualizing plant-pathogen interactions
- Author
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Dunn, A. R., Fry, B. A., Lee, T. Y., Conley, K. D., Balaji, V., Fry, W. E., McLeod, A., and Smart, C. D.
- Published
- 2013
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11. The CID1 cyclin C-like gene is important for plant infection in Fusarium graminearum
- Author
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Rahim Mehrabi, Xiaoying Zhou, Christina Heyer, Jin-Rong Xu, and Yoon E. Choi
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Hyphal growth ,Fusarium ,Mutant ,Virulence ,Conidiation ,Microbiology ,Fungal Proteins ,wheat spikes ,Cyclin Gene ,Gene Expression Regulation, Fungal ,Botany ,toxin biosynthesis ,Genetics ,oxidative stress ,reduced virulence ,species complex ,Triticum ,trichothecene biosynthesis ,Regulation of gene expression ,biology ,EPS-2 ,Reverse Transcriptase Polymerase Chain Reaction ,dependent kinase ,Genetic Complementation Test ,food and beverages ,Hordeum ,gibberella-zeae ,biology.organism_classification ,Laboratorium voor Phytopathologie ,fumonisin biosynthesis ,Gibberella zeae ,Laboratory of Phytopathology ,Mutation ,female fertility - Abstract
Head blight or scab caused by Fusarium graminearum is a destructive disease of wheat and barley. The pathogen can cause severe yield losses and contaminates infested kernels with harmful mycotoxins. In this study, we characterized the CID1 gene in F. graminearum that is an ortholog of the Fusarium verticilloidesFCC1 and yeast UME3 genes. The protein encoded by CID1 has typical structural features of C-type cyclins. Deletion of CID1 resulted in a reduction in conidiation and vegetative growth but an increase in pigmentation. The Deltacid1 mutant was female sterile but could outcross as a male. It was significantly reduced in DON production and virulence on wheat heads and corn stalks. Only about 50% of inoculated spikelets developed scab symptoms and scab disease rarely extended to nearby florets, suggesting that the Deltacid1 mutant was defective in colonizing and spreading in wheat heads. Deletion of CID1 resulted in reduced expression levels of TRI5 and TRI101 but increased PKS12 expression. When expressed in F. verticillioides, the CID1 gene complemented the defects of the Deltafcc1 mutant in conidiation, hyphal growth, and fumonisin production. Our data indicate that the CID1 C-type cyclin gene plays multiple roles in the regulation of vegetative growth, sexual development, conidiation, DON production, and pathogenicity.
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- 2010
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12. Synteny in Toxigenic Fusarium Species: The Fumonisin Gene Cluster and the Mating Type Region as Examples
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Theo van der Lee, Cees Waalwijk, Thamara Hesselink, Gert H. J. Kema, J.A.J. Arts, and Ineke de Vries
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Mating type ,proliferatum ,Population ,population ,Fusarium proliferatum ,Locus (genetics) ,Plant Science ,Horticulture ,Biology ,biosynthetic gene ,moniliforme ,verticillioides ,Gene cluster ,carcinogenicity ,reduced virulence ,education ,Gene ,Synteny ,Comparative genomics ,Genetics ,education.field_of_study ,Biointeracties and Plant Health ,idiomorphs ,food and beverages ,gibberella-zeae ,biology.organism_classification ,asparagus ,PRI Biointeractions en Plantgezondheid ,Agronomy and Crop Science - Abstract
A comparative genomic approach was used to study the mating type locus and the gene cluster involved in toxin production ( fumonisin) in Fusarium proliferatum, a pathogen with a wide host range and a complex toxin profile. A BAC library, generated from F. proliferatum isolate ITEM 2287, was used to identify chromosomal regions flanking the mating type locus and the gene cluster involved in the biosynthesis of fumonisin. These regions were sequenced and compared with corresponding sequences in other ascomycetes. The results demonstrated that the level of synteny between ascomycetes can vary greatly for different genomic regions and that the level of similarity of genes within a region can also fluctuate strongly. Synteny was found in the regions flanking the mating type idiomorph among ascomycetes that supposedly diverged 280 million years ago. The fumonisin gene clusters of F. proliferatum and F. verticillioides were completely syntenic but absent in F. graminearum. The regions flanking the fumonisin gene clusters were highly dissimilar between F. proliferatum and F. verticillioides, whereas they formed a continuous region in F. graminearum. This indicates that the fumonisin gene cluster has been inserted at different genome locations in both species. Surprisingly low similarity was found between the corresponding genes within the fumonisin cluster of F. proliferatum and F. verticillioides, compared to other genomic sequences indicative for two independent acquisition events from distinct genetic sources. The results demonstrate the power of comparative genomics for gene annotation and for studies on the evolution of genes, gene-clusters and species.
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- 2004
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13. Transducin beta-like gene FTL1 is essential for pathogenesis in Fusarium graminearum
- Author
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Shengli Ding, H. Corby Kistler, Jin-Rong Xu, Kyeyong Seong, Cornelia Koten, Rahim Mehrabi, Zhensheng Kang, and Yangdou Wei
- Subjects
Virulence Factors ,Mutant ,Virulence ,Conidiation ,nuclear receptors ,Microbiology ,biosynthetic gene ,Fungal Proteins ,wheat spikes ,Fusarium ,functional-characterization ,Magnaporthe grisea ,reduced virulence ,Transducin ,corepressor complex ,Molecular Biology ,Triticum ,Cellular localization ,Plant Diseases ,biology ,EPS-2 ,magnaporthe-grisea ,Wild type ,food and beverages ,gibberella-zeae ,Articles ,General Medicine ,biology.organism_classification ,Laboratorium voor Phytopathologie ,Ascospore formation ,Gibberella zeae ,Laboratory of Phytopathology ,cellular-localization ,female fertility - Abstract
Fusarium head blight caused by Fusarium graminearum is an important disease of wheat and barley. In a previous study, we identified several mutants with reduced virulence by insertional mutagenesis. A transducin beta-like gene named FTL1 was disrupted in one of these nonpathogenic mutants. FTL1 is homologous to Saccharomyces cerevisiae SIF2 , which is a component of the Set3 complex involved in late stages of ascospore formation. The Δ ftl1 mutant was significantly reduced in conidiation and failed to cause typical disease symptoms. It failed to colonize the vascular tissues of rachis or cause necrosis on the rachis of inoculated wheat heads. The Δ ftl1 mutant also was defective in spreading from infected anthers to ovaries and more sensitive than the wild type to plant defensins MsDef1 and osmotin. However, the activation of two mitogen-activated protein kinases, Mgv1 and Gpmk1, production of deoxynivalenol, and expression of genes known to be important for plant infection in F. graminearum were not affected, indicating that the defect of the Δ ftl1 mutant in plant infection is unrelated to known virulence factors in this pathogen and may involve novel mechanisms. The Δ ftl1 deletion mutant was significantly reduced in histone deacetylation, and many members of the yeast Set3 complex are conserved in F. graminearum . FTL1 appears to be a component of this well-conserved protein complex that plays a critical role in the penetration and colonization of wheat tissues.
- Published
- 2009
14. Transducin beta-like gene FTL1 is essential for pathogenesis in Fusarium graminearum
- Author
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Ding, S.L., Mehrabi, R., Koten, C., Kang, Z.S., Wei, Y.D., Seong, K., Corby Kistler, H., Xu, J.R., Ding, S.L., Mehrabi, R., Koten, C., Kang, Z.S., Wei, Y.D., Seong, K., Corby Kistler, H., and Xu, J.R.
- Abstract
Fusarium head blight caused by Fusarium graminearum is an important disease of wheat and barley. In a previous study, we identified several mutants with reduced virulence by insertional mutagenesis. A transducin beta-like gene named FTL1 was disrupted in one of these nonpathogenic mutants. FTL1 is homologous to Saccharomyces cerevisiae SIF2, which is a component of the Set3 complex involved in late stages of ascospore formation. The ftl1 mutant was significantly reduced in conidiation and failed to cause typical disease symptoms. It failed to colonize the vascular tissues of rachis or cause necrosis on the rachis of inoculated wheat heads. The ftl1 mutant also was defective in spreading from infected anthers to ovaries and more sensitive than the wild type to plant defensins MsDef1 and osmotin. However, the activation of two mitogen-activated protein kinases, Mgv1 and Gpmk1, production of deoxynivalenol, and expression of genes known to be important for plant infection in F. graminearum were not affected, indicating that the defect of the ftl1 mutant in plant infection is unrelated to known virulence factors in this pathogen and may involve novel mechanisms. The ftl1 deletion mutant was significantly reduced in histone deacetylation, and many members of the yeast Set3 complex are conserved in F. graminearum. FTL1 appears to be a component of this well-conserved protein complex that plays a critical role in the penetration and colonization of wheat tissues.
- Published
- 2009
15. Combating coevolutionary disengagement by reducing parasite virulence
- Author
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John Cartlidge and Seth Bullock
- Subjects
sorting networks ,Computer science ,optimisation ,Evolutionary algorithm ,Machine learning ,computer.software_genre ,Models, Biological ,Evolutionary computation ,Host-Parasite Interactions ,Animals ,reduced virulence ,Parasites ,Disengagement theory ,Selection, Genetic ,Symbiosis ,Coevolution ,Simple (philosophy) ,Virulence ,business.industry ,Counterintuitive ,disengagement ,Biological Evolution ,Computational Mathematics ,evolutionary computation ,Metric (mathematics) ,Mutation ,coevolution ,Artificial intelligence ,business ,computer ,Algorithms ,Premature convergence - Abstract
While standard evolutionary algorithms employ a static, absolute fitness metric, co-evolutionary algorithms assess individuals by their performance relative to populations of opponents that are themselves evolving. Although this arrangement offers the possibility of avoiding long-standing difficulties such as premature convergence, it suffers from its own unique problems, cycling, over-focusing and disengagement. Here, we introduce a novel technique for dealing with the third and least explored of these problems. Inspired by studies of natural host-parasite systems, we show that disengagement can be avoided by selecting for individuals that exhibit reduced levels of “virulence”, rather than maximum ability to defeat coevolutionary adversaries. Experiments in both simple and complex domains are used to explain how this counterintuitive approach may be used to improve the success of coevolutionary algorithms.
- Published
- 2004
- Full Text
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16. Caring versus Sharing: How to Maintain Engagement and Diversity in Coevolving Populations
- Author
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Seth Bullock, John Cartlidge, Banzhaf, W, Christaller, T, Dittrich, P, Kim, JT, Ziegler, J, Banzhaf, W., Christaller, T., Dittrich, J. T., and Ziegler, J.
- Subjects
education.field_of_study ,optimisation ,Computer science ,Population ,coevolutionary disengagement ,Variation (game tree) ,Moderation ,fitness sharing ,Shared resource ,virulence ,Microeconomics ,evolutionary computation ,Artificial life ,coevolution ,reduced virulence ,Disengagement theory ,education ,coevolutionary dynamics ,Coevolution ,Simulation ,Diversity (business) - Abstract
Coevolutionary optimisation suffers from a series of problems that interfere with the progressive escalating arms races that are hoped might solve difficult classes of optimisation problem. Here we explore the extent to which encouraging moderation in one coevolving population (termed parasites) can alleviate the problem of coevolutionary disengagement. Results suggest that, under these conditions, disengagement is avoided through maintaining variation in relative fitness scores. In order to explore whether standard diversity maintenance techniques such as resource sharing could achieve the same effects, we compare moderating virulence with resource sharing in a simple matching game. We demonstrate that moderating parasite virulence differs significantly from resource sharing, and that its tendency to prevent disengagement can also reduce the likelihood of coevolutionary optimisation halting at mediocre stable states.
- Published
- 2003
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17. Learning lessons from the common cold:How reducing parasite virulence improves coevolutionary optimization
- Author
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Seth Bullock, John Cartlidge, Fogel, D, El-Sharkawi, M. A., Yao, X, Greenwood, G., Iba, H., Marrow, P., Shackleton, M., and Fogel, David
- Subjects
sorting networks ,business.industry ,optimisation ,disengagement ,Virulence ,coevolutionary disengagement ,Computational biology ,Biology ,Evolutionary computation ,virulence ,evolutionary computation ,coevolution ,Parasite hosting ,reduced virulence ,Artificial intelligence ,Disengagement theory ,business ,coevolutionary dynamics ,Coevolution - Abstract
Inspired by the virulence of natural parasites, a novel approach is developed to tackle disengagement, a detrimental phenomenon coevolutionary systems sometimes experience [1]. After demonstrating beneficial results in a simple model, minimum comparison sorting networks are coevolved, with results suggesting that moderating parasite virulence can help in practical problem domains.
- Published
- 2002
- Full Text
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18. Prospects for Computational Steering of Evolutionary Computation
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Seth Bullock, John Cartlidge, Thompson, M., Smith, Tom, Bullock, Seth, Bird, Jon, Bilotta, E., D., Gro, Smith, T., Lenaerts, T., Bullock, S., Lund, H. H., Bird, J., Watson, R., Pantano, P., Pagliarini, L., Abbass, H., Standish, R., and Bedau, M.
- Subjects
virulence ,visualisation ,virulence adaptation ,evolutionary computation ,coevolution ,disengagement ,reduced virulence ,coevolutionary disengagement ,evolutionary steering ,coevolutionary dynamics - Abstract
Currently, evolutionary computation (EC) typically takes place in batch mode: algorithms are run autonomously, with the user providing little or no intervention or guidance. Although it is rarely possible to specify in advance, on the basis of EC theory, the optimal evolutionary algorithm for a particular problem, it seems likely that experienced EC practitioners possess considerable tacit knowledge of how evolutionary algorithms work. In situations such as this, computational steering (ongoing, informed user intervention in the execution of an otherwise autonomous computational process) has been profitably exploited to improve performance and generate insights into computational processes. In this short paper, prospects for the computational steering of evolutionary computation are assessed, and a prototype example of computational steering applied to a coevolutionary algorithm is presented.
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