1. Genome sequencing in a case of Niemann–Pick type C
- Author
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Megan M. Maurano, Thomas D. Bird, Nicholas Hasle, Gregory S. Olson, Marshall S. Horwitz, Jay Shendure, Max L. Dougherty, John Lazar, Desiree A. Marshall, Karina Diaz, Theodore A Gobillot, Maria T. Nelson, Eli Grunblatt, Jason C. Klein, Daniel J. P. Lawrence, C. Dirk Keene, and Sanjay Srivatsan
- Subjects
Research Report ,Male ,0301 basic medicine ,Pathology ,Hepatosplenomegaly ,progressive encephalopathy ,Genome-wide association study ,0302 clinical medicine ,falls ,progressive psychomotor deterioration ,Niemann-Pick Diseases ,central nervous system degeneration ,Membrane Glycoproteins ,neurodegeneration ,Intracellular Signaling Peptides and Proteins ,atrophy/degeneration affecting the cerebrum ,Brain ,Neurodegenerative Diseases ,Neurofibrillary Tangles ,Niemann-Pick Disease, Type C ,General Medicine ,3. Good health ,progressive language deterioration ,medicine.symptom ,medicine.medical_specialty ,Ataxia ,Lipid storage disorder ,Mutation, Missense ,Cerebellar Purkinje cell ,03 medical and health sciences ,Atrophy ,Niemann-Pick C1 Protein ,medicine ,Humans ,progressive forgetfulness ,Genetic Testing ,Base Sequence ,Whole Genome Sequencing ,business.industry ,slowed slurred speech ,Lipid metabolism ,medicine.disease ,neuronal loss in central nervous system ,030104 developmental biology ,social and occupational deterioration ,Mutation ,Dementia ,hepatosplenomegaly ,NPC1 ,Carrier Proteins ,business ,030217 neurology & neurosurgery - Abstract
Adult-onset Niemann–Pick disease type C (NPC) is an infrequent presentation of a rare neurovisceral lysosomal lipid storage disorder caused by autosomal recessive mutations in NPC1 (∼95%) or NPC2 (∼5%). Our patient was diagnosed at age 33 when he presented with a 10-yr history of difficulties in judgment, concentration, speech, and coordination. A history of transient neonatal jaundice and splenomegaly with bone marrow biopsy suggesting a lipid storage disorder pointed to NPC; biochemical (“variant” level cholesterol esterification) and ultrastructural studies in adulthood confirmed the diagnosis. Genetic testing revealed two different missense mutations in the NPC1 gene—V950M and N1156S. Symptoms progressed over >20 yr to severe ataxia and spasticity, dementia, and dysphagia with aspiration leading to death. Brain autopsy revealed mild atrophy of the cerebrum and cerebellum. Microscopic examination showed diffuse gray matter deposition of balloon neurons, mild white matter loss, extensive cerebellar Purkinje cell loss with numerous “empty baskets,” and neurofibrillary tangles predominantly in the hippocampal formation and transentorhinal cortex. We performed whole-genome sequencing to examine whether the patient harbored variants outside of the NPC1 locus that could have contributed to his late-onset phenotype. We focused analysis on genetic modifiers in pathways related to lipid metabolism, longevity, and neurodegenerative disease. We identified no rare coding variants in any of the pathways examined nor was the patient enriched for genome-wide association study (GWAS) single-nucleotide polymorphisms (SNPs) associated with longevity or altered lipid metabolism. In light of these findings, this case provides support for the V950M variant being sufficient for adult-onset NPC disease.
- Published
- 2016