1. A comprehensive analysis of copy number variation in a Turkish dementia cohort
- Author
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Gamze Guven, Hasmet Hanagasi, Başar Bilgiç, Ebba Lohmann, Catarina Gouveia, Celia Kun-Rodrigues, Rita Guerreiro, Kalina Foster, Hakan Gurvit, Nadia Dehghani, Jose Bras, and Bedia Samanci
- Subjects
Male ,0301 basic medicine ,Turkey ,Receptors, Cytoplasmic and Nuclear ,Disease ,QH426-470 ,pathology [Dementia] ,Cohort Studies ,0302 clinical medicine ,Drug Discovery ,genetics [Ubiquitin-Specific Proteases] ,Copy-number variation ,Family history ,epidemiology [Turkey] ,Sorting Nexins ,Adenosine Triphosphatases ,Aged, 80 and over ,Genetics ,education.field_of_study ,Genomics ,Middle Aged ,genetics [Adenosine Triphosphatases] ,Cohort ,genetics [Sorting Nexins] ,Medicine ,Molecular Medicine ,genetics [Mitochondrial Proteins] ,Female ,Ubiquitin-Specific Proteases ,Primary Research ,genetics [ATP Binding Cassette Transporter 1] ,genetics [Receptors, Cytoplasmic and Nuclear] ,ATP Binding Cassette Transporter 1 ,Frontotemporal dementia ,congenital, hereditary, and neonatal diseases and abnormalities ,Genotyping ,DNA Copy Number Variations ,Genotype ,genetics [DNA Copy Number Variations] ,Population ,Kruppel-Like Transcription Factors ,Karyopherins ,Biology ,Mitochondrial Proteins ,03 medical and health sciences ,genetics [Dementia] ,ddc:570 ,genetics [Karyopherins] ,mental disorders ,medicine ,Humans ,Dementia ,Genetic Predisposition to Disease ,genetics [Genome, Human] ,Copy number variants ,education ,Molecular Biology ,Aged ,Genome, Human ,genetics [Kruppel-Like Transcription Factors] ,medicine.disease ,Human genetics ,030104 developmental biology ,030217 neurology & neurosurgery - Abstract
Background Copy number variants (CNVs) include deletions or multiplications spanning genomic regions. These regions vary in size and may span genes known to play a role in human diseases. As examples, duplications and triplications of SNCA have been shown to cause forms of Parkinson’s disease, while duplications of APP cause early onset Alzheimer’s disease (AD). Results Here, we performed a systematic analysis of CNVs in a Turkish dementia cohort in order to further characterize the genetic causes of dementia in this population. One hundred twenty-four Turkish individuals, either at risk of dementia due to family history, diagnosed with mild cognitive impairment, AD, or frontotemporal dementia, were whole-genome genotyped and CNVs were detected. We integrated family analysis with a comprehensive assessment of potentially disease-associated CNVs in this Turkish dementia cohort. We also utilized both dementia and non-dementia individuals from the UK Biobank in order to further elucidate the potential role of the identified CNVs in neurodegenerative diseases. We report CNVs overlapping the previously implicated genes ZNF804A, SNORA70B, USP34, XPO1, and a locus on chromosome 9 which includes a cluster of olfactory receptors and ABCA1. Additionally, we also describe novel CNVs potentially associated with dementia, overlapping the genes AFG1L, SNX3, VWDE, and BC039545. Conclusions Genotyping data from understudied populations can be utilized to identify copy number variation which may contribute to dementia.
- Published
- 2021
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