1. Comparative analysis of fixation techniques for signal detection in avian embryos.
- Author
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Echeverria, Camilo V., Leathers, Tess A., and Rogers, Crystal D.
- Subjects
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TUBULINS , *CYTOSKELETAL proteins , *FLUORESCENCE in situ hybridization , *CELL morphology , *NEURAL crest - Abstract
The choice of fixation method significantly impacts tissue morphology and visualization of gene expression and proteins after in situ hybridization chain reaction (HCR) or immunohistochemistry (IHC), respectively. In this study, we compared the effects of paraformaldehyde (PFA) and trichloroacetic acid (TCA) fixation techniques prior to HCR and IHC on chicken embryos. Our findings underscore the importance of optimizing fixation methods for accurate visualization and subsequent interpretation of HCR and IHC results, with implications for probe and antibody validation and tissue-specific protein localization studies. We found that TCA fixation resulted in larger and more circular nuclei and neural tubes compared to PFA fixation. Additionally, TCA fixation altered the subcellular fluorescence signal intensity of various proteins, including transcription factors, cytoskeletal proteins, and cadherins. Notably, TCA fixation revealed protein signals in tissues that may be inaccessible with PFA fixation. In contrast, TCA fixation proved ineffective for mRNA visualization. These results highlight the need for optimization of fixation protocols depending on the target and model system, emphasizing the importance of methodological considerations in biological analyses. [Display omitted] • TCA fixation alters cell and tissue morphology compared to PFA fixation. • PFA fixation is superior to TCA fixation prior to fluorescence in situ hybridization chain reaction (HCR). • Signals are detectable after immunohistochemistry (IHC) by fluorescence microscopy using both PFA and TCA fixation methods. • Tissue-specific fluorescence intensity of cadherin and microtubule protein signals differ between PFA and TCA-fixed embryos. [ABSTRACT FROM AUTHOR]
- Published
- 2025
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