21 results on '"neighborhood complex"'
Search Results
2. Neighborhood hypergraph model for topological data analysis
- Author
-
Liu Jian, Chen Dong, Li Jingyan, and Wu Jie
- Subjects
hypergraph ,geometric graphs ,neighborhood complex ,neighborhood hypergraph ,persistent homology ,55n31 ,05c65 ,92e10 ,Biotechnology ,TP248.13-248.65 ,Physics ,QC1-999 - Abstract
Hypergraph, as a generalization of the notions of graph and simplicial complex, has gained a lot of attention in many fields. It is a relatively new mathematical model to describe the high-dimensional structure and geometric shapes of data sets. In this paper,we introduce the neighborhood hypergraph model for graphs and combine the neighborhood hypergraph model with the persistent (embedded) homology of hypergraphs. Given a graph,we can obtain a neighborhood complex introduced by L. Lovász and a filtration of hypergraphs parameterized by aweight function on the power set of the vertex set of the graph. Theweight function can be obtained by the construction fromthe geometric structure of graphs or theweights on the vertices of the graph. We show the persistent theory of such filtrations of hypergraphs. One typical application of the persistent neighborhood hypergraph is to distinguish the planar square structure of cisplatin and transplatin. Another application of persistent neighborhood hypergraph is to describe the structure of small fullerenes such as C20. The bond length and the number of adjacent carbon atoms of a carbon atom can be derived from the persistence diagram. Moreover, our method gives a highly matched stability prediction (with a correlation coefficient 0.9976) of small fullerene molecules.
- Published
- 2022
- Full Text
- View/download PDF
3. Neighborhood Complex Based Machine Learning (NCML) Models for Drug Design
- Author
-
Liu, Xiang, Xia, Kelin, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Reyes, Mauricio, editor, Henriques Abreu, Pedro, editor, Cardoso, Jaime, editor, Hajij, Mustafa, editor, Zamzmi, Ghada, editor, Rahul, Paul, editor, and Thakur, Lokendra, editor
- Published
- 2021
- Full Text
- View/download PDF
4. Dominance complexes, neighborhood complexes and combinatorial Alexander duals.
- Author
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Matsushita, Takahiro and Wakatsuki, Shun
- Subjects
- *
NEIGHBORHOODS , *SOCIAL dominance - Abstract
We show that the dominance complex D (G) of a graph G coincides with the combinatorial Alexander dual of the neighborhood complex N (G ‾) of the complement of G. Using this, we obtain a relation between the chromatic number χ (G) of G and the homology group of D (G). We also obtain several known results related to dominance complexes from well-known facts of neighborhood complexes. After that, we suggest a new method for computing the homology groups of the dominance complexes, using independence complexes of simple graphs. We show that several known computations of homology groups of dominance complexes can be reduced to known computations of independence complexes. Finally, we determine the homology group of D (P n × P 3) by determining the homotopy types of the independence complex of P n × P 3 × P 2. [ABSTRACT FROM AUTHOR]
- Published
- 2025
- Full Text
- View/download PDF
5. Graph Operations and Neighborhood Polynomials
- Author
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Alipour Maryam and Tittmann Peter
- Subjects
neighborhood complex ,neighborhood polynomial ,domination polynomial ,graph operations ,graph degeneracy ,05c31 ,05c76 ,Mathematics ,QA1-939 - Abstract
The neighborhood polynomial of graph G is the generating function for the number of vertex subsets of G of which the vertices have a common neighbor in G. In this paper, we investigate the behavior of this polynomial under several graph operations. Specifically, we provide an explicit formula for the neighborhood polynomial of the graph obtained from a given graph G by vertex attachment. We use this result to propose a recursive algorithm for the calculation of the neighborhood polynomial. Finally, we prove that the neighborhood polynomial can be found in polynomial-time in the class of k-degenerate graphs.
- Published
- 2021
- Full Text
- View/download PDF
6. Connectedness of certain graph coloring complexes.
- Author
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Nilakantan, Nandini and Shukla, Samir
- Subjects
- *
GRAPH coloring , *BIPARTITE graphs , *MORSE theory , *MATHEMATICAL connectedness - Abstract
In this article, we consider the bipartite graphs K 2 × K n. We prove that the connectedness of the complex Hom (K 2 × K n , K m) is m − n − 1 if m ≥ n and m − 3 in all the other cases. Therefore, we show that for this class of graphs, Hom (G , K m) is exactly (m − d − 2) -connected, m ≥ n , where d is the maximal degree of the graph G. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
7. HAJÓS-TYPE CONSTRUCTIONS AND NEIGHBORHOOD COMPLEXES.
- Author
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BRAUN, BENJAMIN and VEGA, JULIANNE
- Subjects
- *
NEIGHBORHOODS , *GRAPH algorithms , *BETTI numbers - Abstract
Any graph G with chromatic number k can be obtained using a Haj'os-type construction, i.e., by iteratively performing the Haj'os merge and vertex identification operations on a sequence of graphs starting with Kk. Finding such constructions for a given graph or family of graphs is a challenging task. In this paper, we show that for a large class of Haj'os merges and for any identification of a pair of vertices having distance at least five from each other, the resulting graph has an S1-wedge summand in its neighborhood complex. Our results imply that for a bridgeless graph G with a highly connected neighborhood complex, the final step in a Haj'os construction must be a vertex identification with vertices at short distance from each other. We investigate this restriction in detail. We also introduce two graph construction algorithms using Hajos-type operations. We discuss the results of computational experiments in which we investigate the rank of the first homology group of the neighborhood complexes of graphs generated using these algorithms. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
8. Neighborhood Complexes and Generating Functions for Affine Semigroups
- Author
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Scarf, Herbert E., Woods, Kevin M., and Yang, Zaifu, editor
- Published
- 2013
- Full Text
- View/download PDF
9. Neighborhood and Domination Polynomials of Graphs.
- Author
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Heinrich, Irene and Tittmann, Peter
- Subjects
- *
POLYNOMIALS , *GRAPH theory , *GRAPHIC methods , *GEOMETRIC vertices , *BIPARTITE graphs - Abstract
The neighborhood complex of a graph is the family of subsets of open neighborhoods of its vertices. The neighborhood polynomial is the ordinary generating function for the number of sets of the neighborhood complex with respect to their cardinality. This paper provides a new representation of the neighborhood polynomial as a sum over complete bipartite subgraphs of a graph. Using the close relation between the domination polynomial and the neighborhood polynomial of a graph, we can also give a new presentation of the domination polynomial. Finally we show that finding the number of certain double cliques of a graph is sufficient to determine the number of dominating sets of a graph. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
10. BOX COMPLEXES AND HOMOTOPY THEORY OF GRAPHS.
- Author
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TAKAHIRO MATSUSHITA
- Subjects
- *
HOMOLOGY theory , *GRAPH theory , *MATHEMATICAL category theory , *GRAPH coloring , *PATHS & cycles in graph theory , *MATHEMATICAL complexes - Abstract
We introduce a model structure on the category of graphs, which is Quillen equivalent to the category of Z2-spaces. A weak equivalence is a graph homomorphism which induces a Z2- homotopy equivalence between their box complexes. The box complex is a Z2-space associated to a graph, considered in the context of the graph coloring problem. In the proof, we discuss the universality problem of the Hom complex. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
11. DEFORMATION RETRACTS OF NEIGHBORHOOD COMPLEXES OF STABLE KNESER GRAPHS.
- Author
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BRAUN, BENJAMIN and ZECKNER, MATTHEW
- Subjects
- *
HOMOTOPY equivalences , *POLYTOPES , *MORSE theory , *AUTOMORPHISM groups , *HOMOMORPHISMS , *TOPOLOGY - Abstract
In 2003, A. Björner and M. de Longueville proved that the neighborhood complex of the stable Kneser graph SGn,k is homotopy equivalent to a k-sphere. Further, for n = 2 they showed that the neighborhood complex deformation retracts to a subcomplex isomorphic to the associahedron. They went on to ask whether or not, for all n and k, the neighborhood complex of SGn,k contains as a deformation retract the boundary complex of a simplicial polytope. Our purpose is to give a positive answer to this question in the case k = 2. We also find in this case that, after partially subdividing the neighborhood complex, the resulting complex deformation retracts onto a subcomplex arising as a polyhedral boundary sphere that is invariant under the action induced by the automorphism group of SGn,2. [ABSTRACT FROM AUTHOR]
- Published
- 2014
12. Threshold graphs, shifted complexes, and graphical complexes
- Author
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Klivans, Caroline J.
- Subjects
- *
MATHEMATICAL complexes , *COORDINATES , *LINEAR algebra , *LINE geometry - Abstract
Abstract: We consider a variety of connections between threshold graphs, shifted complexes, and simplicial complexes naturally formed from a graph. These graphical complexes include the independent set, neighborhood, and dominance complexes. We present a number of structural results and relations among them including new characterizations of the class of threshold graphs. [Copyright &y& Elsevier]
- Published
- 2007
- Full Text
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13. Simple homotopy types of Hom-complexes, neighborhood complexes, Lovász complexes, and atom crosscut complexes
- Author
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Kozlov, Dmitry N.
- Subjects
- *
COMBINATORICS , *LINEAR algebra , *LATTICE theory , *ALGORITHMS - Abstract
Abstract: In this paper we provide concrete combinatorial formal deformation algorithms, namely sequences of elementary collapses and expansions, which relate various previously extensively studied families of combinatorially defined polyhedral complexes. To start with, we give a sequence of elementary collapses leading from the barycentric subdivision of the neighborhood complex to the Lovász complex of a graph. Then, for an arbitrary lattice we describe a formal deformation of the barycentric subdivision of the atom crosscut complex to its order complex . We proceed by proving that the complex of sets bounded from below can also be collapsed to . Finally, as a pinnacle of our project, we apply all these results to certain graph complexes. Namely, by describing an explicit formal deformation, we prove that, for any graph G, the neighborhood complex and the polyhedral complex have the same simple homotopy type in the sense of Whitehead. [Copyright &y& Elsevier]
- Published
- 2006
- Full Text
- View/download PDF
14. Neighborhood complexes of Cayley graphs with generating set of size two
- Author
-
Jennifer R. Hughes
- Subjects
neighborhood complex ,Cayley graph ,General Mathematics ,homology ,Homology (mathematics) ,group representation ,Representation theory ,Group representation ,generated group ,\allowbreak 55U10 ,Combinatorics ,Simplicial complex ,Group action ,05E45 ,05E18 ,Homological algebra ,simplicial complex ,group action ,Group theory ,Mathematics - Abstract
For a group $G$ generated by $S\doteq \{g_1,\ldots ,g_n\}$, one can construct the Cayley graph $\mathrm {Cayley}({G},{S})$. Given a distance set $D\subset \mathbb Z _{\geq 0}$ and $\mathrm{Cayley}{G}{S}$, one can construct a $D$-neighborhood complex. This neighborhood complex is a simplicial complex to which we can associate a chain complex. Group $G$ acts on this chain complex, and this leads to an action on the homology of the chain complex. These group actions decompose into several representations of $G$. This paper uses tools from group theory, representation theory and homological algebra to further our understanding of the interplay between generated groups, corresponding representations on their associated $D$-neighborhood complexes and the homology of the $D$-neighborhood complexes. This paper is an exposition of the results in my dissertation focusing on the case of two generators.
- Published
- 2019
15. Graph Operations and Neighborhood Polynomials
- Author
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Peter Tittmann and Maryam Alipour
- Subjects
Polynomial ,Class (set theory) ,neighborhood polynomial ,0211 other engineering and technologies ,0102 computer and information sciences ,02 engineering and technology ,01 natural sciences ,Combinatorics ,TheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITY ,ComputingMethodologies_SYMBOLICANDALGEBRAICMANIPULATION ,QA1-939 ,FOS: Mathematics ,05c76 ,Discrete Mathematics and Combinatorics ,Mathematics - Combinatorics ,graph operations ,05c31 ,Mathematics ,neighborhood complex ,05C31, 05C69 ,Applied Mathematics ,graph degeneracy ,Generating function ,021107 urban & regional planning ,domination polynomial ,Graph ,Vertex (geometry) ,010201 computation theory & mathematics ,Common neighbor ,Combinatorics (math.CO) ,Graph operations ,MathematicsofComputing_DISCRETEMATHEMATICS - Abstract
The neighborhood polynomial of graph $G$ is the generating function for the number of vertex subsets of $G$ of which the vertices have a common neighbor in $G$. In this paper, we investigate the behavior of this polynomial under several graph operations. Specifically, we provide an explicit formula for the neighborhood polynomial of the graph obtained from a given graph $G$ by vertex attachment. We use this result to propose a recursive algorithm for the calculation of the neighborhood polynomial. Finally, we prove that the neighborhood polynomial can be found in polynomial-time in the class of $k$-degenerate graphs.
- Published
- 2018
16. On the neighborhood complex of [formula omitted]-stable Kneser graphs.
- Author
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Daneshpajouh, Hamid Reza and Osztényi, József
- Subjects
- *
NEIGHBORHOODS , *INTEGERS , *GENERALIZATION , *LOGICAL prediction - Abstract
In 2002, Björner and de Longueville showed the neighborhood complex of the 2-stable Kneser graph K G (n , k) 2 − s t a b has the same homotopy type as the (n − 2 k) -sphere. A short time ago, an analogous result about the homotopy type of the neighborhood complex of almost s -stable Kneser graph has been announced by the second author. Combining this result with the famous Lovász's topological lower bound on the chromatic number of graphs yielded a new way for determining the chromatic number of these graphs which was determined a bit earlier by Chen. In this paper we present a common generalization of the mentioned results. For given an integer vector s → = (s 1 , ... , s k) , first we define s → -stable Kneser graph K G (n , k) s → − s t a b as an induced subgraph of the Kneser graph K G (n , k). Then, we show that the neighborhood complex of K G (n , k) s → − s t a b has the same homotopy type as the n − ∑ i = 1 k − 1 s i − 2 -sphere for some specific values of the parameter s →. In particular, this implies that χ K G (n , k) s → − s t a b = n − ∑ i = 1 k − 1 s i for those parameters. Moreover, as a simple corollary of this result, we give a lower bound on the chromatic number of 3-stable Kneser graphs which is just one less than the number conjectured in this regard. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
17. Graph-Theoretic Simplicial Complexes, Hajos-type Constructions, and k-Matchings
- Author
-
Vega, Julianne
- Subjects
- neighborhood complex, graphs, homotopy, matchings, connectivity, Discrete Mathematics and Combinatorics, Geometry and Topology
- Abstract
A graph property is monotone if it is closed under the removal of edges and vertices. Given a graph G and a monotone graph property P, one can associate to the pair (G,P) a simplicial complex, which serves as a way to encode graph properties within faces of a topological space. We study these graph-theoretic simplicial complexes using combinatorial and topological approaches as a way to inform our understanding of the graphs and their properties. In this dissertation, we study two families of simplicial complexes: (1) neighborhood complexes and (2) k-matching complexes. A neighborhood complex is a simplicial complex of a graph with vertex set the vertices of the graph and facets given by neighborhoods of each vertex of the graph. In 1978, Lov\'asz used neighborhood complexes as a tool for studying lower bounds for the chromatic number of graphs. In Chapter 2, we will prove results about the connectivity of neighborhood complexes in relation to Haj\'os-type constructions and analyze randomly generated graphs arising from two Haj\'os-type stochastic algorithms using SageMath. Chapter 3 will focus on k-matching complexes. A k-matching complex of a graph is a simplicial complex with vertex set given by edges of the graph and faces given sets of edges in the graph such that each vertex of the induced graph has degree at most k. We pursue the study of k-matching complexes and investigate 2-matching complexes of wheel graphs and caterpillar graphs.
- Published
- 2020
18. Spectral gap bounds for the simplicial Laplacian and an application to random complexes.
- Author
-
Shukla, Samir and Yogeshwaran, D.
- Subjects
- *
RANDOM graphs , *MATHEMATICAL complexes , *NEIGHBORHOODS - Abstract
In this article, we derive two spectral gap bounds for the reduced Laplacian of a general simplicial complex. Our two bounds are proven by comparing a simplicial complex in two different ways with a larger complex and with the corresponding clique complex respectively. Both of these bounds generalize the result of Aharoni et al. (2005) [1] which is valid only for clique complexes. As an application, we investigate the thresholds for vanishing of cohomology of the neighborhood complex of the Erdös-Rényi random graph. We improve the upper bound derived in Kahle (2007) [12] by a logarithmic factor using our spectral gap bounds and we also improve the lower bound via finer probabilistic estimates than those in Kahle (2007) [12]. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
19. Simple homotopy types of Hom-complexes, neighborhood complexes, Lov��sz complexes, and atom crosscut complexes
- Author
-
Dmitry N. Kozlov
- Subjects
Whitehead torsion ,Closure operator ,Hom-complexes ,Whitehead theorem ,Collapse ,primary: 57Q10 ,secondary 05C15, 68R10 ,0102 computer and information sciences ,Barycentric subdivision ,Order complex ,Lovász complex ,Neighborhood complex ,Simple homotopy type ,01 natural sciences ,Combinatorics ,Atom ,FOS: Mathematics ,Mathematics - Combinatorics ,Algebraic Topology (math.AT) ,Lovász conjecture ,Mathematics - Algebraic Topology ,0101 mathematics ,Mathematics ,Discrete mathematics ,Homotopy ,010102 general mathematics ,Crosscut complex ,010201 computation theory & mathematics ,Bounded function ,Lovász Conjecture ,Geometry and Topology ,Combinatorics (math.CO) - Abstract
In this paper we provide concrete combinatorial formal deformation algorithms, namely sequences of elementary collapses and expansions, which relate various previously extensively studied families of combinatorially defined polyhedral complexes. To start with, we give a sequence of elementary collapses leading from the barycentric subdivision of the neighborhood complex to the Lov\'asz complex of a graph. Then, for an arbitrary lattice ${\mathcal L}$ we describe a formal deformation of the barycentric subdivision of the atom crosscut complex $\Gamma({\mathcal L})$ to its order complex $\Delta(\bar{\mathcal L})$. We proceed by proving that the complex of sets bounded from below ${\mathcal J}({\mathcal L})$ can also be collapsed to $\Delta(\bar{\mathcal L})$. Finally, as a pinnacle of our project, we apply all these results to certain graph complexes. Namely, by describing an explicit formal deformation, we prove that, for any graph $G$, the neighborhood complex ${\mathcal N}(G)$ and the polyhedral complex $\text{\tt Hom}(K_2,G)$ have the same simple homotopy type in the sense of Whitehead., Comment: The revised version to appear in Topology Appl
- Published
- 2005
- Full Text
- View/download PDF
20. TOPOLOGICAL AND COMBINATORIAL PROPERTIES OF NEIGHBORHOOD AND CHESSBOARD COMPLEXES
- Author
-
Zeckner, Matthew
- Subjects
- Combinatorics, Topology, Simplicial Complex, Neighborhood Complex, Chessboard Complex, Mathematics
- Abstract
This dissertation examines the topological properties of simplicial complexes that arise from two distinct combinatorial objects. In 2003, A. Björner and M. de Longueville proved that the neighborhood complex of the stable Kneser graph SGn,k is homotopy equivalent to a k-sphere. Further, for n = 2 they showed that the neighborhood complex deformation retracts to a subcomplex isomorphic to the associahedron. They went on to ask whether or not, for all n and k, the neighborhood complex of SGn,k contains as a deformation retract the boundary complex of a simplicial polytope. Part one of this dissertation provides a positive answer to this question in the case k = 2. In this case it is also shown that, after partially subdividing the neighborhood complex, the resulting complex deformation retracts onto a subcomplex arising as a polyhedral boundary sphere that is invariant under the action induced by the automorphism group of SGn,2. Part two of this dissertation studies simplicial complexes that arise from non-attacking rook placements on a subclass of Ferrers boards that have ai rows of length i where ai > 0 and i ≤ n for some positive integer n. In particular, enumerative properties of their facets, homotopy type, and homology are investigated.
- Published
- 2011
21. Rational generating functions and lattice point sets.
- Author
-
Woods, Kevin M.
- Subjects
- Frobenius Problem, Generating Functions, Lattice Point, Neighborhood Complex, Rational, Sets
- Abstract
We prove that, for any fixed d, there is a polynomial time algorithm for computing the generating function of any projection of the set of integer points in a d-dimensional polytope. This implies that many interesting sets of integer points can be encoded as short rational generating functions, such as the Frobenius semigroup of all nonnegative integer combinations of given positive integers, affine semigroups, neighbors and the neighborhood complex (also known as the Scarf complex or complex of maximal lattice-free bodies), Hilbert bases, and sets from algebraic integer programming. We also show how to use the generating functions to solve computational problems (such as finding the cardinality of the set or finding its maximum element) in polynomial time. We may also use this theorem to compute, as a short rational function, the Hilbert series of rings generated by monomials. We examine the connection between generating functions and the neighborhood complex, and we consider possibilities for improving the algorithm for the main theorem. Finally, we examine the relationship between rational generating functions and the complexity of Presburger arithmetic.
- Published
- 2004
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