413 results on '"nanodomains"'
Search Results
2. Domain shape evolution under multiple IR laser irradiation in lithium niobate.
- Author
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Kosobokov, M. S., Makaev, A. V., Kuznetsov, D. K., and Shur, V. Ya.
- Abstract
In this work, we have studied the shape evolution of the isolated domains in domain array in congruent lithium niobate crystals under the action of pyroelectric fields arising during multiple irradiation by laser pulses. The loss of the circle shape with the pulse number was obtained in the arrays of isolated domains arising at the edges of the irradiated zone. The simulation of the domain growth under the action of the pyroelectric field allowed revealing two stages of domain shape evolution in the regular domain array. An important role of the neighboring domains was revealed. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Super-resolution microscopy to study membrane nanodomains and transport mechanisms in the plasma membrane
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Yenisleidy de las Mercedes Zulueta Diaz and Eva C. Arnspang
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biological membranes ,super-resolution microscopy ,nanodomains ,membrane receptors ,bioimaging data analysis ,live cell imaging ,Biology (General) ,QH301-705.5 - Abstract
Biological membranes are complex, heterogeneous, and dynamic systems that play roles in the compartmentalization and protection of cells from the environment. It is still a challenge to elucidate kinetics and real-time transport routes for molecules through biological membranes in live cells. Currently, by developing and employing super-resolution microscopy; increasing evidence indicates channels and transporter nano-organization and dynamics within membranes play an important role in these regulatory mechanisms. Here we review recent advances and discuss the major advantages and disadvantages of using super-resolution microscopy to investigate protein organization and transport within plasma membranes.
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- 2024
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4. G Protein–Coupled Receptor Signaling: New Insights Define Cellular Nanodomains.
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Lohse, Martin J., Bock, Andreas, and Zaccolo, Manuela
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ION channels , *CELL membranes , *CELL receptors , *CELL physiology , *SIGNAL peptides , *CELLULAR signal transduction , *CELL motility , *DRUG development - Abstract
G protein–coupled receptors are the largest and pharmacologically most important receptor family and are involved in the regulation of most cell functions. Most of them reside exclusively at the cell surface, from where they signal via heterotrimeric G proteins to control the production of second messengers such as cAMP and IP3 as well as the activity of several ion channels. However, they may also internalize upon agonist stimulation or constitutively reside in various intracellular locations. Recent evidence indicates that their function differs depending on their precise cellular localization. This is because the signals they produce, notably cAMP and Ca2+, are mostly bound to cell proteins that significantly reduce their mobility, allowing the generation of steep concentration gradients. As a result, signals generated by the receptors remain confined to nanometer-sized domains. We propose that such nanometer-sized domains represent the basic signaling units in a cell and a new type of target for drug development. [ABSTRACT FROM AUTHOR]
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- 2024
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5. The Analysis of In-Membrane Nanoscopic Aggregation of Lipids and Proteins by MC-FRET
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Chmelová, Barbora, Humpolíčková, Jana, Stříšovský, Kvido, Šachl, Radek, Pedras, Bruno, Series Editor, Šachl, Radek, editor, and Amaro, Mariana, editor
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- 2023
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6. Observing strain glass transition in Ti33Nb15Zr25Hf25O2 high entropy alloy with Elinvar effect.
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Zhang, Kaichao, Wang, Kai, Wang, Bin, Lv, Chao, Zheng, Jiaxing, Li, Guanqi, Fu, Yu, Xiao, Wenlong, Cai, Qingqing, Nie, Xutao, Shao, Yingfeng, Hou, Huilong, and Zhao, Xinqing
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GLASS transitions ,PHASE transitions ,DYNAMIC mechanical analysis ,METALLIC glasses ,ENTROPY ,TRANSMISSION electron microscopy - Abstract
• The Ti 33 Nb 15 Zr 25 Hf 25 O 2 HEA has been prepared and shows the elinvar effect. • The strain glass transition is confirmed in the Ti 33 Nb 15 Zr 25 Hf 25 O 2 HEA. • Microstructural evolution in the HEA has been investigated. • Strain glass transition has been proposed to explain the elinvar effect. Exploring the phase transition of high entropy alloys (HEAs) with multiple major elements is of great importance for understanding the underlying physical mechanisms. Macroscopic martensitic phase transition has been frequently reported in HEAs, however, nanoscale microstructural phase evolution has not been investigated to the same extent. Herein, we have prepared the Ti 33 Nb 15 Zr 25 Hf 25 O 2 HEA and investigated the strain glass transition and its associated properties using dynamic mechanical analysis and microstructure characterization. We have found that the elastic modulus in Ti 33 Nb 15 Zr 25 Hf 25 O 2 HEA deviates from Wachtman's equation and observed the Elinvar effect in the form of temperature-independent modulus in the temperature range from 150 K to 450 K and frequency-dependence modulus around 220 K. The strain glass transition has been evidenced in Ti 33 Nb 15 Zr 25 Hf 25 O 2 HEA by the formation and growth of nano-sized domains during in-situ transmission electron microscopy (TEM) cooling, and substantiated by the broken ergodicity during zero-field-cooling/field-cooling. The strain glass transition is believed to account for the Elinvar effect, where the modulus hardening of nano-sized domains compensates dynamically with the modulus softening of the transformable matrix. [Display omitted] [ABSTRACT FROM AUTHOR]
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- 2024
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7. Real-time heterogeneity of supramolecular assembly of amyloid precursor protein is modulated by an endocytic risk factor PICALM.
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Belapurkar, Vivek, Mahadeva Swamy, H S, Singh, Nivedita, Kedia, Shekhar, Setty, Subba Rao Gangi, Jose, Mini, and Nair, Deepak
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Recently, the localization of amyloid precursor protein (APP) into reversible nanoscale supramolecular assembly or “nanodomains” has been highlighted as crucial towards understanding the onset of the molecular pathology of Alzheimer’s disease (AD). Surface expression of APP is regulated by proteins interacting with it, controlling its retention and lateral trafficking on the synaptic membrane. Here, we evaluated the involvement of a key risk factor for AD, PICALM, as a critical regulator of nanoscale dynamics of APP. Although it was enriched in the postsynaptic density, PICALM was also localized to the presynaptic active zone and the endocytic zone. PICALM colocalized with APP and formed nanodomains with distinct morphological properties in different subsynaptic regions. Next, we evaluated if this localization to subsynaptic compartments was regulated by the C-terminal sequences of APP, namely, the “Y682ENPTY687” domain. Towards this, we found that deletion of C-terminal regions of APP with partial or complete deletion of Y682ENPTY687, namely, APP–Δ9 and APP–Δ14, affected the lateral diffusion and nanoscale segregation of APP. Lateral diffusion of APP mutant APP–Δ14 sequence mimicked that of a detrimental Swedish mutant of APP, namely, APP–SWE, while APP–Δ9 diffused similar to wild-type APP. Interestingly, elevated expression of PICALM differentially altered the lateral diffusion of the APP C-terminal deletion mutants. These observations confirm that the C-terminal sequence of APP regulates its lateral diffusion and the formation of reversible nanoscale domains. Thus, when combined with autosomal dominant mutations, it generates distinct molecular patterns leading to onset of Alzheimer’s disease (AD). [ABSTRACT FROM AUTHOR]
- Published
- 2023
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8. Atomic force microscopy and other scanning probe microscopy methods to study nanoscale domains in model lipid membranes
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Morgan Robinson, Carina T. Filice, Danielle M. McRae, and Zoya Leonenko
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atomic force microscopy (AFM) ,Kelvin probe force microscopy (KPFM) ,atomic force spectroscopy (AFS) ,model lipid membranes ,nanodomains ,lipid rafts ,Physics ,QC1-999 - Abstract
ABSTRACTThe cell membrane is a fundamental biological structure, which is only 6–10 nm thick. It is composed of hundreds of lipid types, which form small and dynamic lipid domains or rafts. These rafts are thought to be a major aspect of cell organization, to provide support for various transmembrane proteins and are central to the communication of cells with their environs. Understanding the functions of lipid rafts presents an exciting opportunity to understand the molecular mechanisms of biologically important processes, as well as to uncover fundamental molecular mechanisms of membrane-associated diseases. Due to the high complexity of cell membranes, model membranes composed of synthetic lipids have been developed and are widely used to mimic biomembranes in an effort to study the structure and dynamics of lipid domains and their role in cell function. Atomic force microscopy (AFM), Kelvin probe force microscopy (KPFM) and atomic force spectroscopy (AFS) significantly advanced the study of nanodomains in model lipid membranes and monolayers. We review applications of these methods to the study of model membranes, which are widely used to mimic eukaryotic and bacterial cells, as well as neuronal cellular membranes in Alzheimer’s disease (AD).
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- 2023
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9. Mechanisms of microstructural deformation governing Vickers hardness in phase‐separated calcium aluminosilicate glasses.
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Clark, Nicholas L., Chuang, Shih‐Yi, and Mauro, John C.
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VICKERS hardness , *CALCIUM , *PHASE separation , *HARDNESS , *GLASS , *GLASS-ceramics - Abstract
The impact of microstructure on hardness in phase‐separated calcium aluminosilicate glasses is investigated. Changes in hardness are governed by microstructure deformations that occur during indentation. Phase separation leads to decreased hardness due to the incongruent yielding of the droplet and matrix phases. Moreover, the deformation of microstructures possessing dilute, spherical droplets did not have a significant impact on hardness. Microstructures characterized by concentrated, acicular droplets were found to deform through a process of droplet coalescence. This process absorbs additional energy during yielding and results in glasses that deform through droplet coalescence possessing improved hardness. [ABSTRACT FROM AUTHOR]
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- 2023
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10. Eukaryotic Cell Membranes: Structure, Composition, Research Methods and Computational Modelling.
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Zhukov, Anatoly and Popov, Valery
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CELL membranes , *EUKARYOTIC cells , *LIPID rafts , *CELL anatomy , *ORGANELLES , *MEMBRANE lipids - Abstract
This paper deals with the problems encountered in the study of eukaryotic cell membranes. A discussion on the structure and composition of membranes, lateral heterogeneity of membranes, lipid raft formation, and involvement of actin and cytoskeleton networks in the maintenance of membrane structure is included. Modern methods for the study of membranes and their constituent domains are discussed. Various simplified models of biomembranes and lipid rafts are presented. Computer modelling is considered as one of the most important methods. This is stated that from the study of the plasma membrane structure, it is desirable to proceed to the diverse membranes of all organelles of the cell. The qualitative composition and molar content of individual classes of polar lipids, free sterols and proteins in each of these membranes must be considered. A program to create an open access electronic database including results obtained from the membrane modelling of individual cell organelles and the key sites of the membranes, as well as models of individual molecules composing the membranes, has been proposed. [ABSTRACT FROM AUTHOR]
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- 2023
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11. Correlative super-resolution analysis of cardiac calcium sparks and their molecular origins in health and disease
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Miriam E. Hurley, Ed White, Thomas M. D. Sheard, Derek Steele, and Izzy Jayasinghe
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ryanodine receptor ,nanodomains ,calcium signalling ,DNA-PAINT ,correlative light microscopy ,Biology (General) ,QH301-705.5 - Abstract
Rapid release of calcium from internal stores via ryanodine receptors (RyRs) is one of the fastest types of cytoplasmic second messenger signalling in excitable cells. In the heart, rapid summation of the elementary events of calcium release, 'calcium sparks', determine the contraction of the myocardium. We adapted a correlative super-resolution microscopy protocol to correlate sub-plasmalemmal spontaneous calcium sparks in rat right ventricular myocytes with the local nanoscale RyR2 positions. This revealed a steep relationship between the integral of a calcium spark and the sum of the local RyR2s. Segmentation of recurring spark sites showed evidence of repeated and triggered saltatory activation of multiple local RyR2 clusters. In myocytes taken from failing right ventricles, RyR2 clusters themselves showed a dissipated morphology and fragmented (smaller) clusters. They also featured greater heterogeneity in both the spark properties and the relationship between the integral of the calcium spark and the local ensemble of RyR2s. While fragmented (smaller) RyR2 clusters were rarely observed directly underlying the larger sparks or the recurring spark sites, local interrogation of the channel-to-channel distances confirmed a clear link between the positions of each calcium spark and the tight, non-random clustering of the local RyR2 in both healthy and failing ventricles.
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- 2023
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12. CAR modulates plasma membrane nano‐organization and immune signaling downstream of RALF1‐FERONIA signaling pathway.
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Chen, Weijun, Zhou, Huina, Xu, Fan, Yu, Meng, Coego, Alberto, Rodriguez, Lesia, Lu, Yuqing, Xie, Qijun, Fu, Qiong, Chen, Jia, Xu, Guoyun, Wu, Dousheng, Li, Xiushan, Li, Xiaojuan, Jaillais, Yvon, Rodriguez, Pedro L., Zhu, Sirui, and Yu, Feng
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CELL membranes , *CELLULAR signal transduction , *PEPTIDES , *IMMUNE complexes , *SIGNALS & signaling , *ABSCISIC acid - Abstract
Summary: In Arabidopsis, the receptor‐like kinase (RLK) FERONIA (FER) senses peptide ligands in the plasma membrane (PM), modulates plant growth and development, and integrates biotic and abiotic stress signaling for downstream adaptive responses. However, the molecular interplay of these diverse processes is largely unknown.Here, we show that FER, the receptor of Rapid Alkalinization Factor 1 (RALF1), physically interacts with C2 domain ABA‐related (CAR) proteins to control the nano‐organization of the PM. During this process, the RALF1‐FER pathway upregulates CAR protein translation, and then more CAR proteins are recruited to the PM. This acts as a rapid feedforward loop that stabilizes the PM liquid‐ordered phase. FER interacts with and phosphorylates CARs, thereby reducing their lipid‐binding ability and breaking the feedback regulation at later time points.The formation of the flg22‐induced FLS2‐BAK1 immune complex, which depends on the integrity of FER‐containing nanodomains, is impaired in fer and pentuple car14569 mutant.Together, we propose that the FER‐CAR module controls the formation of PM nano‐organization during RALF signaling through a self‐contained amplifying loop including both positive and negative feedback. [ABSTRACT FROM AUTHOR]
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- 2023
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13. Lipids in Mitochondrial Macroautophagy: Phase Behavior of Bilayers Containing Cardiolipin and Ceramide.
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Varela, Yaiza R., González-Ramírez, Emilio J., Iriondo, Marina N., Ballesteros, Uxue, Etxaniz, Asier, Montes, Lidia Ruth, Goñi, Félix M., and Alonso, Alicia
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CERAMIDES , *CARDIOLIPIN , *CONFOCAL fluorescence microscopy , *CARRIER proteins , *ATOMIC force microscopy , *PHOSPHOLIPIDS - Abstract
Cardiolipin (CL) is a key lipid for damaged mitochondrial recognition by the LC3/GABARAP human autophagy proteins. The role of ceramide (Cer) in this process is unclear, but CL and Cer have been proposed to coexist in mitochondria under certain conditions. Varela et al. showed that in model membranes composed of egg sphingomyelin (eSM), dioleoyl phosphatidylethanolamine (DOPE), and CL, the addition of Cer enhanced the binding of LC3/GABARAP proteins to bilayers. Cer gave rise to lateral phase separation of Cer-rich rigid domains but protein binding took place mainly in the fluid continuous phase. In the present study, a biophysical analysis of bilayers composed of eSM, DOPE, CL, and/or Cer was attempted to understand the relevance of this lipid coexistence. Bilayers were studied by differential scanning calorimetry, confocal fluorescence microscopy, and atomic force microscopy. Upon the addition of CL and Cer, one continuous phase and two segregated ones were formed. In bilayers with egg phosphatidylcholine instead of eSM, in which the binding of LC3/GABARAP proteins hardly increased with Cer in the former study, a single segregated phase was formed. Assuming that phase separation at the nanoscale is ruled by the same principles acting at the micrometer scale, it is proposed that Cer-enriched rigid nanodomains, stabilized by eSM:Cer interactions formed within the DOPE- and CL-enriched fluid phase, result in structural defects at the rigid/fluid nanointerfaces, thus hypothetically facilitatingLC3/GABARAP protein interaction. [ABSTRACT FROM AUTHOR]
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- 2023
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14. Control of phosphatidylinositol‐3‐kinase signaling by nanoscale membrane compartmentalization.
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Cabral‐Dias, Rebecca and Antonescu, Costin N.
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PTEN protein , *SIGNALS & signaling , *CELL membranes , *CARRIER proteins , *CELL physiology - Abstract
Phosphatidylinositol‐3‐kinases (PI3Ks) are lipid kinases that produce 3‐phosphorylated derivatives of phosphatidylinositol upon activation by various cues. These 3‐phosphorylated lipids bind to various protein effectors to control many cellular functions. Lipid phosphatases such as phosphatase and tensin homolog (PTEN) terminate PI3K‐derived signals and are critical to ensure appropriate signaling outcomes. Many lines of evidence indicate that PI3Ks and PTEN, as well as some specific lipid effectors are highly compartmentalized, either in plasma membrane nanodomains or in endosomal compartments. We examine the evidence for specific recruitment of PI3Ks, PTEN, and other related enzymes to membrane nanodomains and endocytic compartments. We then examine the hypothesis that scaffolding of the sources (PI3Ks), terminators (PTEN), and effectors of these lipid signals with a common plasma membrane nanodomain may achieve highly localized lipid signaling and ensure selective activation of specific effectors. This highlights the importance of spatial regulation of PI3K signaling in various physiological and disease contexts. [ABSTRACT FROM AUTHOR]
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- 2023
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15. Effect of crowding, compartmentalization and nanodomains on protein modification and redox signaling – current state and future challenges.
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Fuentes-Lemus, Eduardo and Davies, Michael J.
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BIOLOGICAL systems , *PROTEINS , *METABOLIC regulation , *CHEMICAL kinetics , *OXIDATION-reduction reaction , *OXIDATIVE stress , *MACROMOLECULES - Abstract
Biological milieus are highly crowded and heterogeneous systems where organization of macromolecules within nanodomains (e.g. membraneless compartments) is vital to the regulation of metabolic processes. There is an increasing interest in understanding the effects that such packed environments have on different biochemical and biological processes. In this context, the redox biochemistry and redox signaling fields are moving towards investigating oxidative processes under conditions that exhibit these key features of biological systems in order to solve existing paradigms including those related to the generation and transmission of specific redox signals within and between cells in both normal physiology and under conditions of oxidative stress. This review outlines the effects that crowding, nanodomain formation and altered local viscosities can have on biochemical processes involving proteins, and then discusses some of the reactions and pathways involving proteins and oxidants that may, or are known to, be modulated by these factors. We postulate that knowledge of protein modification processes (e.g. kinetics, pathways and product formation) under conditions that mimic biological milieus, will provide a better understanding of the response of cells to endogenous and exogenous stressors, and their role in ageing, signaling, health and disease. [Display omitted] • Biological systems are heavily crowded and heterogeneous environments. • These factors may influence protein oxidation, glycation and redox signaling. • Crowding modulates reaction kinetics, and the extent and sites of modification. • Crowding enhances chain reactions, and alters product yields and cross-linking. • Nanodomains and membraneless organelles can facilitate redox signaling. [ABSTRACT FROM AUTHOR]
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- 2023
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16. Ultralow Loss and High Tunability in a Non‐perovskite Relaxor Ferroelectric.
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Li, Ruitao, Xu, Diming, Avdeev, Max, Zhang, Lei, Chen, Xinfeng, Gou, Gaoyang, Wang, Dong, Liu, Wenfeng, and Zhou, Di
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DIELECTRIC materials , *RELAXOR ferroelectrics , *CERAMICS , *ENERGY density , *FERROELECTRIC polymers , *DIELECTRIC loss , *ENERGY storage , *NEUTRON diffraction , *ELECTRONIC systems - Abstract
Dielectric ceramics are fundamental for electronic systems, including energy storages, microwave applications, ultrasonics, and sensors. Relaxor ferroelectrics show superb performance among dielectrics due to their high efficiency and energy density by the nature of nanodomains. Here, a novel non‐perovskite relaxor ferroelectric, Bi6Ti5WO22, with ultralow loss, ≈10−3, highly tunable permittivity, ≈2200 at room temperature with 40% tunability and the superparaelectric region at room temperature is presented. The actual crystal structure and the nanodomains of Bi6Ti5WO22 are demonstrat Various‐temperature neutron powder diffraction and in situ high‐resolution transmission‐electron‐microscopy illustrate the twinning effect, subtle structure change and micro‐strain in the material influenced by temperature, manifesting the actual crystal structure of Bi6Ti5WO22. Compared with dielectric loss of BaTiO3‐based dielectric tunable materials, the loss of Bi6Ti5WO22 is more than an order of magnitude lower, which makes it exhibit a figure of merit (≈240), much higher than that of conventional dielectric tunable materials (< 100), endorse the material great potential for direct applications. The present research offers a strategy for discovering novel relaxor ferroelectrics and a highly desirable material for fabricating energy storage capacitors, microwave dielectrics, and ultrasonics. [ABSTRACT FROM AUTHOR]
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- 2023
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17. Introducing Diinamic, a flexible and robust method for clustering analysis in single-molecule localization microscopy.
- Author
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Paupiah, Anne-Lise, Marques, Xavier, Merlaud, Zaha, Russeau, Marion, Levi, Sabine, and Renner, Marianne
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FLUOROPHORES ,CELL imaging ,GAUSSIAN distribution ,BIOLOGICAL systems ,DATA mining - Abstract
Super-resolution microscopy allowed major improvements in our capacity to describe and explain biological organization at the nanoscale. Single-molecule localization microscopy (SMLM) uses the positions of molecules to create super-resolved images, but it can also provide new insights into the organization of molecules through appropriate pointillistic analyses that fully exploit the sparse nature of SMLM data. However, the main drawback of SMLM is the lack of analytical tools easily applicable to the diverse types of data that can arise from biological samples. Typically, a cloud of detections may be a cluster of molecules or not depending on the local density of detections, but also on the size of molecules themselves, the labeling technique, the photo-physics of the fluorophore, and the imaging conditions. We aimed to set an easy-to-use clustering analysis protocol adaptable to different types of data. Here, we introduce Diinamic, which combines different density-based analyses and optional thresholding to facilitate the detection of clusters. On simulated or real SMLM data, Diinamic correctly identified clusters of different sizes and densities, being performant even in noisy datasets with multiple detections per fluorophore. It also detected subdomains (“nanodomains”) in clusters with non-homogeneous distribution of detections. [ABSTRACT FROM AUTHOR]
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- 2023
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18. Introducing Diinamic, a flexible and robust method for clustering analysis in single-molecule localization microscopy
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Anne-Lise Paupiah, Xavier Marques, Zaha Merlaud, Marion Russeau, Sabine Levi, and Marianne Renner
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clustering analysis ,DBSCAN ,nanodomains ,PALM ,STORM ,super-resolution microscopy ,Biology (General) ,QH301-705.5 ,Medical technology ,R855-855.5 - Abstract
Super-resolution microscopy allowed major improvements in our capacity to describe and explain biological organization at the nanoscale. Single-molecule localization microscopy (SMLM) uses the positions of molecules to create super-resolved images, but it can also provide new insights into the organization of molecules through appropriate pointillistic analyses that fully exploit the sparse nature of SMLM data. However, the main drawback of SMLM is the lack of analytical tools easily applicable to the diverse types of data that can arise from biological samples. Typically, a cloud of detections may be a cluster of molecules or not depending on the local density of detections, but also on the size of molecules themselves, the labeling technique, the photo-physics of the fluorophore, and the imaging conditions. We aimed to set an easy-to-use clustering analysis protocol adaptable to different types of data. Here, we introduce Diinamic, which combines different density-based analyses and optional thresholding to facilitate the detection of clusters. On simulated or real SMLM data, Diinamic correctly identified clusters of different sizes and densities, being performant even in noisy datasets with multiple detections per fluorophore. It also detected subdomains (“nanodomains”) in clusters with non-homogeneous distribution of detections.
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- 2023
- Full Text
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19. Correlation of Structural, Microstructural, Dielectric, and Impedance Properties in Nd Doping on Bi4Ti2FeO12 Multiferroic Aurivillius Ceramic.
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Patri, Tirupathi, Durga Rao, T., Chandra Sekhar, K. S. K. R., Raghupathi Rao, S., Rayaprol, S., and Babu, P. D.
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TEMPERATURE coefficient of electric resistance , *CERAMICS , *UNIT cell , *DIELECTRICS , *PERMITTIVITY - Abstract
Bi4−xNdxFeTi2O12 (BNFTO, x = 0, 0.5, 1.0, and 1.5) Aurivillius three‐layered ceramics are prepared via a solid‐state reaction method. The crystal structure of the compounds reveals that the compounds exhibit a major orthorhombic structure with the B2cb space group. Slight distortions in the orthorhombic unit cell and an increase in cell volume with the doping of Nd are observed. Highly dense randomly oriented plate‐like nonuniform grains are observed in the micrographs of the ceramics. A decrease in energy bandgap values is noticed in Nd‐doped ceramics from 2.88 to 2.18 eV. An increase in polarization values is observed with Nd doping due to the improved grain boundaries. The appearance of a weak ferromagnetic nature at low temperature followed by a decline in magnetic interaction at room temperature (RT) is observed for all compounds. The frequency and temperature variations of the dielectric constant are investigated. The frequency and temperature variations of the impedance measurements indicate that compounds exhibit non‐Debye‐type electrical relaxations and a negative temperature coefficient of resistance. Furthermore, single‐peak relaxations are predominant for all measured samples, mainly the contribution of intragranular grain regions. This makes Nd‐dopant BNFTO Aurivillius ceramics have a great research value for RT multiferroic applications. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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20. Single‐molecule imaging reveals Tau trapping at nanometer‐sized dynamic hot spots near the plasma membrane that persists after microtubule perturbation and cholesterol depletion.
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Padmanabhan, Pranesh, Kneynsberg, Andrew, Cruz, Esteban, Amor, Rumelo, Sibarita, Jean‐Baptiste, and Götz, Jürgen
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CELL membranes , *TAU proteins , *ULTRACOLD molecules , *MICROTUBULES , *HIGH resolution imaging , *ALZHEIMER'S disease , *CELLULOSE synthase , *CHOLESTEROL - Abstract
Accumulation of aggregates of the microtubule‐binding protein Tau is a pathological hallmark of Alzheimer's disease. While Tau is thought to primarily associate with microtubules, it also interacts with and localizes to the plasma membrane. However, little is known about how Tau behaves and organizes at the plasma membrane of live cells. Using quantitative, single‐molecule imaging, we show that Tau exhibits spatial and kinetic heterogeneity near the plasma membrane of live cells, resulting in the formation of nanometer‐sized hot spots. The hot spots lasted tens of seconds, much longer than the short dwell time (∼ 40 ms) of Tau on microtubules. Pharmacological and biochemical disruption of Tau/microtubule interactions did not prevent hot spot formation, suggesting that these are different from the reported Tau condensation on microtubules. Although cholesterol removal has been shown to reduce Tau pathology, its acute depletion did not affect Tau hot spot dynamics. Our study identifies an intrinsic dynamic property of Tau near the plasma membrane that may facilitate the formation of assembly sites for Tau to assume its physiological and pathological functions. Synopsis: The cytosolic leaflet of the plasma membrane has long been suggested as a site for Tau to execute some of its functions. However, how this protein behaves and organizes at the plasma membrane of live cells remains largely unknown. Using single‐molecule super‐resolution imaging, this study quantifies Tau's spatiotemporal organization at a nanoscale level in this compartment. Tau exists in multiple spatial and kinetic subpopulations near the plasma membrane.Preventing Tau/microtubule interactions biochemically or pharmacologically increases the mobility of individual Tau molecules.Tau forms dynamic, nanometer‐sized hot spots lasting tens of seconds.Tau's mobility is reduced within the hot spots.Tau hot spots persist even after the disruption of Tau/microtubule interactions and cholesterol depletion. [ABSTRACT FROM AUTHOR]
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- 2022
- Full Text
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21. A Theoretical Basis for Nanodomains.
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Allender, D. W. and Schick, M.
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CELL membranes , *RAFTS , *MICROEMULSIONS , *CHOLESTEROL , *PERSISTENT pollutants - Abstract
We review the current theories of nanodomain, or "raft," formation. We emphasize that the idea that they are co-exisiting Lo and Ld phases is fraught with difficulties, as is the closely related idea that they are due to critical fluctuations. We then review an alternate theory that the plasma membrane is a two-dimensional microemulsion, and that the mechanism that drives to zero the line tension between Lo and Ld phases is the coupling of height and composition fluctuations. The theory yields rafts of SM and cholesterol in the outer leaf and POPS and POPC in the inner leaf. The "sea" between rafts consists of POPC in the outer leaf and POPE and cholesterol in the inner leaf. The characteristic size of the domain structures is tens of nanometers. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
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22. Three-Fluorophore FRET Enables the Analysis of Ternary Protein Association in Living Plant Cells.
- Author
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Glöckner, Nina, zur Oven-Krockhaus, Sven, Rohr, Leander, Wackenhut, Frank, Burmeister, Moritz, Wanke, Friederike, Holzwart, Eleonore, Meixner, Alfred J., Wolf, Sebastian, and Harter, Klaus
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FLUORESCENCE resonance energy transfer ,PLANT communities ,PROTEIN analysis ,CELL membranes ,PROTEIN-protein interactions - Abstract
Protein-protein interaction studies provide valuable insights into cellular signaling. Brassinosteroid (BR) signaling is initiated by the hormone-binding receptor Brassinosteroid Insensitive 1 (BRI1) and its co-receptor BRI1 Associated Kinase 1 (BAK1). BRI1 and BAK1 were shown to interact independently with the Receptor-Like Protein 44 (RLP44), which is implicated in BRI1/BAK1-dependent cell wall integrity perception. To demonstrate the proposed complex formation of BRI1, BAK1 and RLP44, we established three-fluorophore intensity-based spectral Förster resonance energy transfer (FRET) and FRET-fluorescence lifetime imaging microscopy (FLIM) for living plant cells. Our evidence indicates that RLP44, BRI1 and BAK1 form a ternary complex in a distinct plasma membrane nanodomain. In contrast, although the immune receptor Flagellin Sensing 2 (FLS2) also forms a heteromer with BAK1, the FLS2/BAK1 complexes are localized to other nanodomains. In conclusion, both three-fluorophore FRET approaches provide a feasible basis for studying the in vivo interaction and sub-compartmentalization of proteins in great detail. [ABSTRACT FROM AUTHOR]
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- 2022
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23. Ceramide regulation of autophagy: A biophysical approach
- Author
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Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), European Commission, Eusko Jaurlaritza, Fundación Ramón Areces, Fundación Biofísica Bizkaia, Basque Excellence Research Centre, Ministerio de Educación, Cultura y Deporte (España), Varela, Yaiza R. [0000-0002-7601-4025], Iriondo, Marina N. [0000-0002-3816-0865], Goñi, Félix M. [0000-0001-6270-9216], Alonso, Alicia [0000-0002-2730-7470], Montes, L. Ruth [0000-0002-4766-8417], Varela, Yaiza R., Iriondo, Marina N., Goñi, Félix M., Alonso, Alicia, Montes, L. Ruth, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), European Commission, Eusko Jaurlaritza, Fundación Ramón Areces, Fundación Biofísica Bizkaia, Basque Excellence Research Centre, Ministerio de Educación, Cultura y Deporte (España), Varela, Yaiza R. [0000-0002-7601-4025], Iriondo, Marina N. [0000-0002-3816-0865], Goñi, Félix M. [0000-0001-6270-9216], Alonso, Alicia [0000-0002-2730-7470], Montes, L. Ruth [0000-0002-4766-8417], Varela, Yaiza R., Iriondo, Marina N., Goñi, Félix M., Alonso, Alicia, and Montes, L. Ruth
- Abstract
Specific membrane lipids play unique roles in (macro)autophagy. Those include phosphatidylethanolamine, to which LC3/GABARAP autophagy proteins become covalently bound in the process, or cardiolipin, an important effector in mitochondrial autophagy (or mitophagy). Ceramide (Cer), or N-acyl sphingosine, is one of the simplest sphingolipids, known as a stress signal in the apoptotic pathway. Moreover, Cer is increasingly being recognized as an autophagy activator, although its mechanism of action is unclear. In the present review, the proposed Cer roles in autophagy are summarized, together with some biophysical properties of Cer in membranes. Possible pathways for Cer activation of autophagy are discussed, including specific protein binding of the lipid, and Cer-dependent perturbation of bilayer properties. Cer generation of lateral inhomogeneities (domain formation) is given special attention. Recent biophysical results, including fluorescence and atomic force microscopy data, show Cer-promoted enhanced binding of LC3/GABARAP to lipid bilayers. These observations could be interpreted in terms of the putative formation of Cer-rich nanodomains.
- Published
- 2024
24. Enhanced Energy Storage Performance of Lead-Free BaTiO3-K0.5Na0.5NbO3 via Grain Engineering.
- Author
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Jin, Quan, Song, Enpeng, and Cai, Ke
- Subjects
ENERGY storage ,ENERGY density ,GRAIN size ,ENERGY consumption ,CERAMICS - Abstract
The polarization difference (∆P) and the breakdown field strength (BDS) of ceramics are both key factors in achieving enhanced energy storage performance, such as energy storage density (W), recoverable energy storage density (W
rec ), and energy storage efficiency (η). Using BaTiO3 (BT) as the main crystal phase and utilizing K0.5 Na0.5 NbO3 (KNN) as the coating agent, sintering aid, and additives, BT-KNN ceramics with grain sizes of 100 nm and 200 nm were synthesized by the self-assembly sintering method, respectively. The as-obtained BT-KNN ceramics showed obvious nanodomains, relaxor behaviors, and dielectric temperature stability, with high ∆P and large BDS. The BT-KNN ceramics with grain size of 200 nm have higher energy storage properties, including W (2.50 J/cm3 ), Wrec (2.08 J/cm3 ), and η (83.2%), than those of the BT-KNN ceramics with the grain size of 100 nm. This research may provide a theoretical basis for preparing BT-based ceramics with high energy storage performance. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
25. Phosphatidylinositol 4‐phosphate: a key determinant of plasma membrane identity and function in plants.
- Author
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Marković, Vedrana and Jaillais, Yvon
- Subjects
- *
CELL membranes , *PLANT plasma membranes , *GOLGI apparatus , *EUKARYOTIC cells , *ENDOPLASMIC reticulum , *CYTOLOGY - Abstract
Summary: Phosphatidylinositol 4‐phosphate (PI4P) is an anionic phospholipid which has been described as a master regulator of the Golgi apparatus in eukaryotic cells. However, recent evidence suggests that PI4P mainly accumulates at the plasma membrane in all plant cells analyzed so far. In addition, many functions that are typically attributed to phosphatidylinositol 4,5‐bisphosphate (PI(4,5)P2) in animal and yeast cells are also supported by PI4P in plants. For example, PI4P is the key anionic lipid that powers the strong electrostatic properties of the plasma membrane. Phosphatidylinositol 4‐phosphate is also required for the establishment of stable membrane contacts between the endoplasmic reticulum and the plasma membrane, for exocytosis and to support signaling pathways. Thus, we propose that PI4P has a prominent role in specifying the identity of the plasma membrane and in supporting some of its key functions and should be considered a hallmark lipid of this compartment. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
26. Strain Glass State, Strain Glass Transition, and Controlled Strain Release.
- Author
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Wang, Dong, Ji, Yuanchao, Ren, Xiaobing, and Wang, Yunzhi
- Abstract
Strain glass is a new strain state discovered recently in ferroelastic systems that is characterized by nanoscale martensitic domains formed through a freezing transition. These nanodomains typically have mottled or tweed morphology depending on the elastic anisotropy of the system. Strain glass transition is a broadly smeared and high order–like transition, taking place within a wide temperature or stress range. It is accompanied by many unique properties, including linear superelasticity with high strength, low modulus, Invar and Elinvar anomalies, and large magnetostriction. In this review, we first discuss experimental characterization and testing that have led to the discovery of the strain glass transition and its unique properties. We then introduce theoretical models and computer simulations that have shed light on the origin and mechanisms underlying the unique characteristics and properties of strain glass transitions. Unresolved issues and challenges in strain glass study are also addressed. Strain glass transition can offer giant elastic strain and ultralow elastic modulus by well-controlled reversible structural phase transformations through defect engineering. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
27. Impact of Ca 2+ -Induced PI(4,5)P 2 Clusters on PH-YFP Organization and Protein-Protein Interactions.
- Author
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Borges-Araújo, Luís, Monteiro, Marina E., Mil-Homens, Dalila, Bernardes, Nuno, Sarmento, Maria J., Coutinho, Ana, Prieto, Manuel, and Fernandes, Fábio
- Subjects
- *
PROTEIN-protein interactions , *FLUORESCENT proteins , *BLOOD proteins , *MEMBRANE proteins , *CELL membranes , *PHOSPHOINOSITIDES , *CALCIUM channels - Abstract
Despite its low abundance, phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2) is a key modulator of membrane-associated signaling events in eukaryotic cells. Temporal and spatial regulation of PI(4,5)P2 concentration can achieve localized increases in the levels of this lipid, which are crucial for the activation or recruitment of peripheral proteins to the plasma membrane. The recent observation of the dramatic impact of physiological divalent cation concentrations on PI(4,5)P2 clustering, suggests that protein anchoring to the plasma membrane through PI(4,5)P2 is likely not defined solely by a simple (monomeric PI(4,5)P2)/(protein bound PI(4,5)P2) equilibrium, but instead depends on complex protein interactions with PI(4,5)P2 clusters. The insertion of PI(4,5)P2-binding proteins within these clusters can putatively modulate protein–protein interactions in the membrane, but the relevance of such effects is largely unknown. In this work, we characterized the impact of Ca2+ on the organization and protein–protein interactions of PI(4,5)P2-binding proteins. We show that, in giant unilamellar vesicles presenting PI(4,5)P2, the membrane diffusion properties of pleckstrin homology (PH) domains tagged with a yellow fluorescent protein (YFP) are affected by the presence of Ca2+, suggesting direct interactions between the protein and PI(4,5)P2 clusters. Importantly, PH-YFP is found to dimerize in the membrane in the absence of Ca2+. This oligomerization is inhibited in the presence of physiological concentrations of the divalent cation. These results confirm that cation-dependent PI(4,5)P2 clustering promotes interactions between PI(4,5)P2-binding proteins and has the potential to dramatically influence the organization and downstream interactions of PI(4,5)P2-binding proteins in the plasma membrane. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
28. Multifaceted Melanocortin Receptors.
- Author
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Laiho, Linda and Murray, Joanne Fiona
- Subjects
MELANOCORTIN receptors ,PROOPIOMELANOCORTIN - Abstract
The 5 known melanocortin receptors (MCs) have established physiological roles. With the exception of MC
2 , these receptors can behave unpredictably, and since they are more widely expressed than their established roles would suggest, it is likely that they have other poorly characterized functions. The aim of this review is to discuss some of the less well-explored aspects of the 4 enigmatic members of this receptor family (MC1,3-5 ) and describe how these are multifaceted G protein–coupled receptors (GPCRs). These receptors appear to be promiscuous in that they bind several endogenous agonists (products of the proopiomelanocortin [ POMC ] gene) and antagonists but with inconsistent relative affinities and effects. We propose that this is a result of posttranslational modifications that determine receptor localization within nanodomains. Within each nanodomain there will be a variety of proteins, including ion channels, modifying proteins, and other GPCRs, that can interact with the MCs to alter the availability of receptor at the cell surface as well as the intracellular signaling resulting from receptor activation. Different combinations of interacting proteins and MCs may therefore give rise to the complex and inconsistent functional profiles reported for the MCs. For further progress in understanding this family, improved characterization of tissue-specific functions is required. Current evidence for interactions of these receptors with a range of partners, resulting in modulation of cell signaling, suggests that each should be studied within the full context of their interacting partners. The role of physiological status in determining this context also remains to be characterized. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
29. Boosting Low-E electro-strain via high-electronegativity B-site substitution in lead-free K0.5Na0.5NbO3-based ceramics.
- Author
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Wang, Jie, Wang, Binquan, Huangfu, Geng, Zhang, Hongjie, and Guo, Yiping
- Subjects
- *
FATIGUE limit , *MATERIALS science , *PIEZOELECTRIC materials , *PIEZOELECTRIC actuators , *PIEZOELECTRIC ceramics - Abstract
Lead-free piezoelectric actuators emerge as promising substitutes for their lead-containing counterparts to address environmental concerns. However, they often confront a trade-off between low driving electric fields and high electro-strain. Herein, a novel strategy to boost electro-strain under low electric fields is proposed by doping high-electronegativity B-site atoms into perovskite potassium sodium niobate-based ceramics. Our findings reveal that high-electronegativity B-site atoms elevate the covalency of B-O bonding, softening the short-range repulsion and introducing local multiphase coexistence. This leads to more nanoscale domain structures and lower coercive field, thereby enabling large strains to be produced at lower electric fields. Notably, a substantial 0.2 % bipolar electro-strain and 0.1 % unipolar electro-strain under 10 kV cm-1 is achieved in Sr, Sb co-doped potassium sodium niobate ceramics, with a broad working frequency and temperature range, as well as excellent fatigue resistance. This study unveils innovative insights into designing lead-free piezoelectric ceramics with remarkable electro-strain performance and low driving electric field, promising a significant advancement in lead-free piezoelectric materials science and piezoelectric actuators. [Display omitted] [ABSTRACT FROM AUTHOR]
- Published
- 2025
- Full Text
- View/download PDF
30. Structural-functional integrated TiBw/Ti–V–Al lightweight shape memory alloy composites.
- Author
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Sun, Kuishan, Sun, Bin, Li, Hao, Yi, Xiaoyang, Meng, Xianglong, Gao, Zhiyong, and Cai, Wei
- Subjects
- *
SHAPE memory effect , *CRYSTAL whiskers , *SHAPE memory alloys , *SOLUTION strengthening , *TRANSFER matrix , *GRAIN refinement - Abstract
Driven by the increasing demands in advanced aerospace engineering, the integrated structural and functional materials are explored. In present study, we fabricate the TiB w /Ti–V–Al lightweight shape memory alloy composites with large recoverable strain (>5 %), high specific strength (>200 MPa cm3/g) and good elongation (>20 %). The satisfied structural and functional performances are attributed to the unique gradient microstructure, including TiB whiskers, short-range martensitic nanodomains and long-range martensitic microdomains. TiB w with the optimized orientation exhibits high load-bearing capacity. The transition area between TiB w and matrix is composed of short-range martensitic nanodomains. Nanodomains are affected by the diffused interstitial B atoms and local internal stress field regulated by TiB w. The elastic interaction energy between nanodomains and TiB w are calculated according to the Eshelby method. Upon deformation, nanodomains grow to long-range martensitic laths. The long-range martensitic laths keep stable after unloading. The microstructure evolution ties well with the Landau free energy model. It achieves effective loading transfer from matrix to reinforcement phase, resulting in less irreversible defects and better shape memory effect. In addition, grain refinement strengthening, loading transfer strengthening and solution strengthening are utilized to achieve the improvement of the strength and plasticity. The finding offers a promising inspiration for the development of new type shape memory alloy composites with integrated structural and functional properties. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
31. Ultrafast Nanocrystallization of BaF2 in Oxyfluoride Glasses with Crystal-like Nanostructures: Implications for Upconversion Fiber Devices.
- Author
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Kenji Shinozaki, Yoshiki Ishii, Sohei Sukenaga, and Koji Ohara
- Abstract
Transparent glass-ceramic fibers containing fluoride nanocrystals are attracting attention as upconversion devices. In this paper, a material design is proposed that eliminates the need for heat treatment processes. The impact of short- to medium-range structures on the crystallization of glasses was investigated to enable nanocrystallization in the quenching process via ultrafast nucleation. In this study, the short- to medium-range structures of (33.3 - x/3)-BaF
2 -xZnO-(66.7 - 2x/3)-B2 O3 glasses were investigated by11 B- and19 F-magic-angle spinning nuclear magnetic resonance spectroscopy, molecular dynamics simulations, and the high-energy synchrotron X-ray diffraction. After heat treatment, glasses with x > 40 formed BaF2 nanocrystals with a diameter of ~5 nm and a small particle size distribution (<1 nm). Based on the high-energy synchrotron X-ray diffraction, the critical size of the nuclei was estimated to be 4 nm, which was similar to the size of the precipitated crystals. Obvious selectivity in the binding was observed: F- preferred Ba2+ and O2- preferred B3+ , whereas Zn2+ was bound to both anions. The binding selectivity caused a bicontinuous structure of oxide and fluoride domains, and the fluoride-related structure factors and bond distance were very similar to the peak positions of the precipitated crystals. Er3+ -doped glasses with x > 40 showed upconversion luminescence with a spectrum similar to that of BaF2 . These results suggested the pre-existence of a crystal-like structure with a composition, density, and ordering similar to those of the precipitated crystals. Moreover, glass with the modified composition was successfully crystallized during press-quenching of the melt and the fiber drawing process. These results could facilitate the production of photonic components such as nanocrystallized glass fibers and microspheres for upconversion lasers as well as a wide variety of glass-ceramic products. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
32. Imaging of surface microdomains on individual extracellular vesicles in 3‐D.
- Author
-
McNamara, Ryan P., Zhou, Yijun, Eason, Anthony B., Landis, Justin T., Chambers, Meredith G., Willcox, Smaranda, Peterson, Tiffany A., Schouest, Blake, Maness, Nicholas J., MacLean, Andrew G., Costantini, Lindsey M., Griffith, Jack D., and Dittmer, Dirk Peter
- Subjects
- *
EXTRACELLULAR vesicles , *DNA vaccines , *OPTICAL diffraction , *GENE therapy , *MICROSCOPY - Abstract
Extracellular vesicles (EVs) are secreted from all cell types and are intimately involved in tissue homeostasis. They are being explored as vaccine and gene therapy platforms, as well as potential biomarkers. As their size is below the diffraction limit of light microscopy, direct visualizations have been daunting and single‐particle studies under physiological conditions have been hampered. Here, direct stochastic optical reconstruction microscopy (dSTORM) was employed to visualize EVs in three‐dimensions and to localize molecule clusters such as the tetraspanins CD81 and CD9 on the surface of individual EVs. These studies demonstrate the existence of membrane microdomains on EVs. These were confirmed by Cryo‐EM. Individual particle visualization provided insights into the heterogeneity, structure, and complexity of EVs not previously appreciated [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
33. Microstructural evolution of droplet phase separation in calcium aluminosilicate glasses.
- Author
-
Clark, Nicholas L., Chuang, Shih‐Yi, and Mauro, John C.
- Subjects
- *
PHASE separation , *CALCIUM , *BROWNIAN motion , *HEAT treatment , *FRACTURE toughness - Abstract
Glasses with nanoscale phase separation have the potential to possess improved hardness and fracture toughness while maintaining their optical transparency. Here we present the results of isothermal heat treatments of phase‐separated calcium aluminosilicate glasses. Our results indicate that a transition from Lifshitz–Slozof–Wagner (LSW)‐type kinetics to a diffusion‐controlled pseudo‐coalescence mechanism occurs at ~17% droplet volume fraction, which results in the droplets becoming increasingly elongated and interconnected. The activation barrier for both mechanisms suggests that calcium diffusion is the underlying means for the coarsening of the silica‐rich domains. Simple approximations show the transition cannot be explained by Brownian motion or Van der Waals attraction between domains, and instead suggest various osmotic forces may be responsible. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
34. α2δ‐2 is required for depolarization‐induced suppression of excitation in Purkinje cells.
- Author
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Beeson, Kathleen A., Westbrook, Gary L., and Schnell, Eric
- Subjects
- *
PURKINJE cells , *CALCIUM channels , *CALCIUM - Abstract
α2δ proteins (CACNA2D1–4) are required for normal neurological function and contribute to membrane trafficking of voltage‐gated calcium channels, through which calcium entry initiates numerous physiological processes. However, it remains unclear how α2δ proteins influence calcium‐mediated signalling to control neuronal output. Using whole‐cell recordings of mouse Purkinje cells, we show that α2δ‐2 is required for functional coupling of postsynaptic voltage‐dependent calcium entry with calcium‐dependent effector mechanisms controlling two different outputs, depolarization‐induced suppression of excitation and spike afterhyperpolarization. Our findings indicate an important role for α2δ‐2 proteins in regulating functional postsynaptic calcium channel coupling in neurons, providing new context for understanding the effects of α2δ mutations on neuronal circuit function and presenting additional potential avenues to manipulate α2δ‐mediated signalling for therapeutic gain. Key points: Calcium influx, via voltage‐dependent calcium channels, drives numerous neuronal signalling processes with precision achieved in part by tight coupling between calcium entry and calcium‐dependent effectors.α2δ proteins are important for neurological function and contribute to calcium channel membrane trafficking, although how α2δ proteins influence postsynaptic calcium‐dependent signalling is largely unexplored.Here it is shown that loss of α2δ‐2 proteins disrupts functional calcium coupling to two different postsynaptic calcium‐dependent signals in mouse Purkinje cell neurons, retrograde endocannabinoid signalling and the action potential afterhyperpolarization.The findings provide new insights into the control of calcium coupling as well as new roles for α2δ‐2 proteins in neurons. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
35. Imaging of surface microdomains on individual extracellular vesicles in 3‐D
- Author
-
Ryan P. McNamara, Yijun Zhou, Anthony B. Eason, Justin T. Landis, Meredith G. Chambers, Smaranda Willcox, Tiffany A. Peterson, Blake Schouest, Nicholas J. Maness, Andrew G. MacLean, Lindsey M. Costantini, Jack D. Griffith, and Dirk Peter Dittmer
- Subjects
biotechnology ,exosome ,extracellular vesicle ,microvesicle ,dSTORM ,nanodomains ,Cytology ,QH573-671 - Abstract
Abstract Extracellular vesicles (EVs) are secreted from all cell types and are intimately involved in tissue homeostasis. They are being explored as vaccine and gene therapy platforms, as well as potential biomarkers. As their size is below the diffraction limit of light microscopy, direct visualizations have been daunting and single‐particle studies under physiological conditions have been hampered. Here, direct stochastic optical reconstruction microscopy (dSTORM) was employed to visualize EVs in three‐dimensions and to localize molecule clusters such as the tetraspanins CD81 and CD9 on the surface of individual EVs. These studies demonstrate the existence of membrane microdomains on EVs. These were confirmed by Cryo‐EM. Individual particle visualization provided insights into the heterogeneity, structure, and complexity of EVs not previously appreciated
- Published
- 2022
- Full Text
- View/download PDF
36. Super-resolution microscopy to study membrane nanodomains and transport mechanisms in the plasma membrane.
- Author
-
Zulueta Diaz YLM and Arnspang EC
- Abstract
Biological membranes are complex, heterogeneous, and dynamic systems that play roles in the compartmentalization and protection of cells from the environment. It is still a challenge to elucidate kinetics and real-time transport routes for molecules through biological membranes in live cells. Currently, by developing and employing super-resolution microscopy; increasing evidence indicates channels and transporter nano-organization and dynamics within membranes play an important role in these regulatory mechanisms. Here we review recent advances and discuss the major advantages and disadvantages of using super-resolution microscopy to investigate protein organization and transport within plasma membranes., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Zulueta Diaz and Arnspang.)
- Published
- 2024
- Full Text
- View/download PDF
37. Ferroelectricity in Ultrathin Halide Perovskites.
- Author
-
Kashikar R, Valdespino A, Ogg C, Uppgard E, Lisenkov S, and Ponomareva I
- Abstract
Ferroelectricity has recently been demonstrated in germanium-based halide perovskites. We use first-principles-based simulations to study 4-18 nm CsGeBr
3 films and develop a theory for ferroelectric ultrathin films. The theory introduces (i) a local order parameter, which identifies phase transitions into both monodomain and polydomain phases, and (ii) a dipole pattern classifier, which allows efficient and reliable identification of dipole patterns. Application of the theory to both halides CsGeBr3 and CsGeI3 and oxide BiFeO3 ultrathin ferroelectrics reveals two distinct scenarios. First, the films transition into a monodomain phase below the critical value of the residual depolarizing field. Above this critical value, the second scenario occurs, and the film undergoes a transition into a nanodomain phase. The two scenarios exhibit opposite responses of Curie temperature to thickness reduction. Application of a dipole pattern classifier reveals rich nanodomain phases in halide films: nanostripes, labyrinths, zig-zags, pillars, and lego domains.- Published
- 2024
- Full Text
- View/download PDF
38. Single-cell transcriptome atlases of soybean root and mature nodule reveal new regulatory programs that control the nodulation process.
- Author
-
Cervantes-Pérez SA, Zogli P, Amini S, Thibivilliers S, Tennant S, Hossain MS, Xu H, Meyer I, Nooka A, Ma P, Yao Q, Naldrett MJ, Farmer A, Martin O, Bhattacharya S, Kläver J, and Libault M
- Subjects
- Plant Roots genetics, Plant Roots microbiology, Single-Cell Analysis, Gene Expression Regulation, Plant, Symbiosis genetics, Nitrogen Fixation genetics, Bradyrhizobium genetics, Bradyrhizobium physiology, Glycine max genetics, Glycine max microbiology, Transcriptome, Plant Root Nodulation genetics, Root Nodules, Plant genetics, Root Nodules, Plant microbiology, Root Nodules, Plant metabolism
- Abstract
The soybean root system is complex. In addition to being composed of various cell types, the soybean root system includes the primary root, the lateral roots, and the nodule, an organ in which mutualistic symbiosis with N-fixing rhizobia occurs. A mature soybean root nodule is characterized by a central infection zone where atmospheric nitrogen is fixed and assimilated by the symbiont, resulting from the close cooperation between the plant cell and the bacteria. To date, the transcriptome of individual cells isolated from developing soybean nodules has been established, but the transcriptomic signatures of cells from the mature soybean nodule have not yet been characterized. Using single-nucleus RNA-seq and Molecular Cartography technologies, we precisely characterized the transcriptomic signature of soybean root and mature nodule cell types and revealed the co-existence of different sub-populations of B. diazoefficiens-infected cells in the mature soybean nodule, including those actively involved in nitrogen fixation and those engaged in senescence. Mining of the single-cell-resolution nodule transcriptome atlas and the associated gene co-expression network confirmed the role of known nodulation-related genes and identified new genes that control the nodulation process. For instance, we functionally characterized the role of GmFWL3, a plasma membrane microdomain-associated protein that controls rhizobial infection. Our study reveals the unique cellular complexity of the mature soybean nodule and helps redefine the concept of cell types when considering the infection zone of the soybean nodule., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
39. Scattering from phase-separated vesicles. I. An analytical form factor for multiple static domains
- Author
-
Katsaras, John [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Biology and Soft Matter Division; Univ. of Tennessee, Knoxville, TN (United States). Dept. of Physics and Astronomy; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Joint Inst. for Neutron Sciences; Brock Univ., St. Catharines, ON (Canada). Dept. of Physics]
- Published
- 2015
- Full Text
- View/download PDF
40. AFM and NSOM/QD Based Direct Molecular Visualization at the Single-Cell Level
- Author
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Zhong, Liyun, Cai, Jiye, Chen, Zhengwei, and Cai, Jiye, editor
- Published
- 2018
- Full Text
- View/download PDF
41. Lateral Diffusion in Heterogeneous Cell Membranes
- Author
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Marguet, Didier, Salomé, Laurence, Bassereau, Patricia, editor, and Sens, Pierre, editor
- Published
- 2018
- Full Text
- View/download PDF
42. Three-Fluorophore FRET Enables the Analysis of Ternary Protein Association in Living Plant Cells
- Author
-
Nina Glöckner, Sven zur Oven-Krockhaus, Leander Rohr, Frank Wackenhut, Moritz Burmeister, Friederike Wanke, Eleonore Holzwart, Alfred J. Meixner, Sebastian Wolf, and Klaus Harter
- Subjects
protein-protein interaction ,plasma membrane ,nanodomains ,spectral Förster resonance energy transfer (FRET) ,FRET-fluorescence lifetime imaging microscopy (FRET-FLIM) ,Botany ,QK1-989 - Abstract
Protein-protein interaction studies provide valuable insights into cellular signaling. Brassinosteroid (BR) signaling is initiated by the hormone-binding receptor Brassinosteroid Insensitive 1 (BRI1) and its co-receptor BRI1 Associated Kinase 1 (BAK1). BRI1 and BAK1 were shown to interact independently with the Receptor-Like Protein 44 (RLP44), which is implicated in BRI1/BAK1-dependent cell wall integrity perception. To demonstrate the proposed complex formation of BRI1, BAK1 and RLP44, we established three-fluorophore intensity-based spectral Förster resonance energy transfer (FRET) and FRET-fluorescence lifetime imaging microscopy (FLIM) for living plant cells. Our evidence indicates that RLP44, BRI1 and BAK1 form a ternary complex in a distinct plasma membrane nanodomain. In contrast, although the immune receptor Flagellin Sensing 2 (FLS2) also forms a heteromer with BAK1, the FLS2/BAK1 complexes are localized to other nanodomains. In conclusion, both three-fluorophore FRET approaches provide a feasible basis for studying the in vivo interaction and sub-compartmentalization of proteins in great detail.
- Published
- 2022
- Full Text
- View/download PDF
43. NaNbO3‐(Bi0.5Li0.5)TiO3 Lead‐Free Relaxor Ferroelectric Capacitors with Superior Energy‐Storage Performances via Multiple Synergistic Design.
- Author
-
Xie, Aiwen, Zuo, Ruzhong, Qiao, Zhenliang, Fu, Zhengqian, Hu, Tengfei, and Fei, Linfeng
- Subjects
- *
FERROELECTRIC capacitors , *RELAXOR ferroelectrics , *POWER capacitors , *CERAMIC capacitors , *FERROELECTRIC ceramics , *RAMAN microscopy , *DIELECTRIC properties - Abstract
Relaxor ferroelectric (FE) ceramic capacitors have attracted increasing attention for their excellent energy‐storage performance. However, it is extremely difficult to achieve desirable comprehensive energy‐storage features required for industrial applications. In this work, very high recoverable energy density Wrec ≈ 8.73 J cm–3, high efficiency η ≈ 80.1%, ultrafast discharge rate of <85 ns, and temperature‐insensitive high Wrec and η (Wrec ≈ 5.73 ± 4% J cm–3, η ≈ 75 ± 6%, 25–200 °C) are simultaneously obtained in 0.68NaNbO3‐0.32(Bi0.5Li0.5)TiO3 relaxor FE ceramics by introducing various polarization configurations in combination with microstructure modification. The structure mechanism for the excellent energy‐storage performance is disclosed by analyzing in situ structure evolution on multiple scales during loading/unloading by means of transmission electron microscopy and Raman spectroscopy. Both local regions consisting of different‐scale polar nanodomains and a nonpolar matrix, and local orthorhombic symmetry remaining with electric fields ensure a linear‐like polarization response within a wide field and temperature range owing to significantly delayed polarization saturation. The stabilization of orthorhombic FE phases rather than antiferroelectric orthorhombic phases in NaNbO3 after adding (Bi0.5Li0.5)TiO3 is also explored by means of X‐ray diffraction, dielectric properties, and selected area electron diffraction. In comparison with antiferroelectric ceramics, NaNbO3‐based relaxor FE ceramics provide a new solution to successfully design next‐generation pulsed power capacitors. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
44. From proton transfer to ionic liquids: How isolated domains of ion pairs grow to form extended network in diphenyl phosphate-bis(2-ethylhexyl) amine mixtures.
- Author
-
Calandra, Pietro, Caputo, Paolino, Oliviero Rossi, Cesare, Kozak, Maciej, Taube, Michał, Pochylski, Mikolaj, and Gapinski, Jacek
- Subjects
- *
ION pairs , *IONIC liquids , *ELECTROSTATIC interaction , *DIPHENYL , *AB-initio calculations , *LIQUID mixtures , *MIXTURES - Abstract
[Display omitted] • DiphenylPhosphate(DPP)/bis(2-ethylhexyl)Amine(BEEA) mixtures show optical birefringence if subjected to a magnetic field. • Magnetically-induced birefringence data suggests that DPP-BEEA anisotropy contrasts that shown by unassociated species. • Around DPP molar ratio 0.1–0.2, a probable percolation of DPP/BEEA ionic liquid domains takes place. Diphenyl phosphate (DPP)/bis(2-ethylhexyl) amine (BEEA) liquid mixtures are expected to show peculiar self-assembly behavior due to their, respectively, acidic and basic nature which can trigger acid-base reaction. The properties of DPP/BEEA mixtures of different compositions are explored by a combined theoretical (Ab initio calculations) and experimental (rheology, X-ray and light scattering) approach. (i) a proton transfer from DPP to BEEA takes place with formation of cationic and anionic species in liquid phase (ion pair formation); (ii) due to the strong and long-range electrostatic interactions, each of the two charged species is preferentially surrounded by the other one, in a picture resembling the structure of ionic materials; (iii) this gives rise to a striking viscosity increase takes place as DPP concentration increases; (iv) the composition dependencies of all measured parameters show clear deviations around DPP molar fraction of 0.2, indicating unequivocally the formation of isolated domains, formed by DPP-BEEA pairs which coalescence/percolate into a unique, extended, network at higher DPP concentrations. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
45. Interactions between the Nicotinic and Endocannabinoid Receptors at the Plasma Membrane
- Author
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Ana Sofía Vallés and Francisco J. Barrantes
- Subjects
plasma membrane ,membrane domains ,nanodomains ,neurotransmitter receptors ,cannabinoids ,acetylcholine receptor ,Chemical technology ,TP1-1185 ,Chemical engineering ,TP155-156 - Abstract
Compartmentalization, together with transbilayer and lateral asymmetries, provide the structural foundation for functional specializations at the cell surface, including the active role of the lipid microenvironment in the modulation of membrane-bound proteins. The chemical synapse, the site where neurotransmitter-coded signals are decoded by neurotransmitter receptors, adds another layer of complexity to the plasma membrane architectural intricacy, mainly due to the need to accommodate a sizeable number of molecules in a minute subcellular compartment with dimensions barely reaching the micrometer. In this review, we discuss how nature has developed suitable adjustments to accommodate different types of membrane-bound receptors and scaffolding proteins via membrane microdomains, and how this “effort-sharing” mechanism has evolved to optimize crosstalk, separation, or coupling, where/when appropriate. We focus on a fast ligand-gated neurotransmitter receptor, the nicotinic acetylcholine receptor, and a second-messenger G-protein coupled receptor, the cannabinoid receptor, as a paradigmatic example.
- Published
- 2022
- Full Text
- View/download PDF
46. Emerging Evidence for cAMP-Ca 2+ Cross Talk in Heart Atrial Nanodomains Where IP3-Evoked Ca 2+ Release Stimulates Adenylyl Cyclases.
- Author
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Burton, Rebecca-Ann B. and Terrar, Derek A.
- Abstract
Calcium handling is vital to normal physiological function in the heart. Human atrial arrhythmias, eg. atrial fibrillation, are a major morbidity and mortality burden, yet major gaps remain in our understanding of how calcium signaling pathways function and interact. Inositol trisphosphate (IP3) is a Ca2+-mobilizing second messenger and its agonist-induced effects have been observed in many tissue types. In the atria IP3 receptors (IR3Rs) residing on junctional sarcoplasmic reticulum augment cellular Ca2+ transients and, when over-stimulated, lead to arrhythmogenesis. Recent studies have demonstrated that the predominant pathway for IP3 actions in atrial myocytes depends on stimulation of calcium-dependent forms of adenylyl cyclase (AC8 and AC1) by IP3-evoked Ca2+ release from the sarcoplasmic reticulum. AC8 shows co-localisation with IP3Rs and AC1 appears to be nearby. These observations support crosstalk between Ca2+ and cAMP pathways in nanodomains in atria. Similar mechanisms also appear to operate in the pacemaker region of the sinoatrial node. Here we discuss these significant advances in our understanding of atrial physiology and pathology, together with implications for the identification of potential novel targets and modulators for the treatment of atrial arrhythmias. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
47. Low-loss high entropy relaxor-like ferroelectrics with A-site disorder.
- Author
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Xiong, Wei, Zhang, Hangfeng, Cao, Shuyao, Gao, Feng, Svec, Peter, Dusza, Jan, Reece, Michael J, and Yan, Haixue
- Subjects
- *
FERROELECTRIC ceramics , *FERROELECTRIC crystals , *DIELECTRIC measurements , *FERROELECTRIC materials , *ENTROPY , *DIELECTRIC loss - Abstract
Relaxor ferroelectric ceramics are good candidates for capacitor, sensor and actuator applications because of their high dielectric permittivity, high piezoelectric constant and high value of field induced strain, respectively. However, their dielectric loss is usually relatively high, which is a problem for actual applications. The introduction of the high entropy concept opens up the possibility of developing new multi-element relaxor-like ferroelectric materials with short-range ordered polar structures having short relaxation times to decrease their loss. Here we present a new high entropy A-site disordered perovskite (Pb 0.25 Ba 0.25 Sr 0.25 Ca 0.25)TiO 3 relaxor-like ferroelectric. Moreover, the ceramic has low loss (<0.015) from room temperature to 125 °C. The relaxor-like nature of the material is proved by dielectric and ferroelectric measurements. This work demonstrates the great potential of high entropy perovskites as relaxor-like ferroelectrics with a wide compositional window for tuning their properties for different applications. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
48. Emerging Evidence for cAMP-calcium Cross Talk in Heart Atrial Nanodomains Where IP3-Evoked Calcium Release Stimulates Adenylyl Cyclases.
- Author
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Burton, Rebecca-Ann B. and Terrar, Derek A.
- Subjects
CALCIUM ,ADENYLATE cyclase ,ARRHYTHMIA ,MUSCLE cells ,PATHOLOGY - Abstract
Calcium handling is vital to normal physiological function in the heart. Human atrial arrhythmias, eg. atrial fibrillation, are a major morbidity and mortality burden, yet major gaps remain in our understanding of how calcium signaling pathways function and interact. Inositol trisphosphate (IP
3 ) is a calcium-mobilizing second messenger and its agonist-induced effects have been observed in many tissue types. In the atria IP3 receptors (IR3 Rs) residing on junctional sarcoplasmic reticulum augment cellular calcium transients and, when over-stimulated, lead to arrhythmogenesis. Recent studies have demonstrated that the predominant pathway for IP3 actions in atrial myocytes depends on stimulation of calcium-dependent forms of adenylyl cyclase (AC8 and AC1) by IP3 -evoked calcium release from the sarcoplasmic reticulum. AC8 shows co-localisation with IP3 Rs and AC1 appears to be nearby. These observations support crosstalk between calcium and cAMP pathways in nanodomains in atria. Similar mechanisms also appear to operate in the pacemaker region of the sinoatrial node. Here we discuss these significant advances in our understanding of atrial physiology and pathology, together with implications for the identification of potential novel targets and modulators for the treatment of atrial arrhythmias. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
49. Impact of Ca2+-Induced PI(4,5)P2 Clusters on PH-YFP Organization and Protein-Protein Interactions
- Author
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Luís Borges-Araújo, Marina E. Monteiro, Dalila Mil-Homens, Nuno Bernardes, Maria J. Sarmento, Ana Coutinho, Manuel Prieto, and Fábio Fernandes
- Subjects
PI(4,5)P2 ,nanodomains ,Ca2+ ,PI(4,5)P2-binding proteins ,Microbiology ,QR1-502 - Abstract
Despite its low abundance, phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2) is a key modulator of membrane-associated signaling events in eukaryotic cells. Temporal and spatial regulation of PI(4,5)P2 concentration can achieve localized increases in the levels of this lipid, which are crucial for the activation or recruitment of peripheral proteins to the plasma membrane. The recent observation of the dramatic impact of physiological divalent cation concentrations on PI(4,5)P2 clustering, suggests that protein anchoring to the plasma membrane through PI(4,5)P2 is likely not defined solely by a simple (monomeric PI(4,5)P2)/(protein bound PI(4,5)P2) equilibrium, but instead depends on complex protein interactions with PI(4,5)P2 clusters. The insertion of PI(4,5)P2-binding proteins within these clusters can putatively modulate protein–protein interactions in the membrane, but the relevance of such effects is largely unknown. In this work, we characterized the impact of Ca2+ on the organization and protein–protein interactions of PI(4,5)P2-binding proteins. We show that, in giant unilamellar vesicles presenting PI(4,5)P2, the membrane diffusion properties of pleckstrin homology (PH) domains tagged with a yellow fluorescent protein (YFP) are affected by the presence of Ca2+, suggesting direct interactions between the protein and PI(4,5)P2 clusters. Importantly, PH-YFP is found to dimerize in the membrane in the absence of Ca2+. This oligomerization is inhibited in the presence of physiological concentrations of the divalent cation. These results confirm that cation-dependent PI(4,5)P2 clustering promotes interactions between PI(4,5)P2-binding proteins and has the potential to dramatically influence the organization and downstream interactions of PI(4,5)P2-binding proteins in the plasma membrane.
- Published
- 2022
- Full Text
- View/download PDF
50. Mobile Anchors.
- Author
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Zaza, Antonio
- Subjects
- *
ADRENERGIC receptors , *CYCLIC-AMP-dependent protein kinase - Abstract
Keywords: -adrenergic receptors; AKAPs; nanodomains; signaling EN -adrenergic receptors AKAPs nanodomains signaling 1 3 3 08/11/22 20220501 NES 220501 A Perspective on "Subcellular Propagation of Cardiomyocyte -Adrenergic Activation of Calcium... The least one expects from an anchor is to stay put (freely adapted from Salvador Dali's opinion about Alexander Calder's sculptures). Phosphorylation state-dependent interaction between AKAP7delta/gamma and phospholamban increases phospholamban phosphorylation. They show that the PLN-targeted intracellular 1AR-PKA-AKAP7 complex they recently identified[9] is endowed with considerable mobility, exceeding that of PLN itself. [Extracted from the article]
- Published
- 2022
- Full Text
- View/download PDF
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