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[Display omitted] • Optimal carbon addition enhanced anaerobic P release from the sediments. • Diverse carbon sources dosages driven different sediment microbial evolution. • Glucose addition enriched fermentative bacteria under anaerobic conditions. • SRB contributed to improving P release in VFAs-fed systems. • Metabolic pathways link P and S cycling in sediment. The aim of this study was recovery of phosphorus (P) from marine sediment, and our results revealed the influence of P release from the sediment stimulated with different types and concentrations of carbon sources. During the 15-day anaerobic operation, the sediments stimulated with 1 g/L propionic acid and glucose exhibited more prominent effects compared to other trials, with 5.98 mg/L and 6.44 mg/L of P released, respectively, with a total solid content of 4 %. Notably, the excessive addition of carbon sources was shown to can partially inhibit P release. As microbial activity intensified, P was utilized for microbial synthesis, resulting in a decreased P in the supernatant. For example, in glucose-fed systems with concentrations of 5 g/L and 10 g/L, the P concentration decreased from 5 mg/L on Day 3 to approximately 3 mg/L on Day 15. The sequencing results indicated distinct evolutions within different carbon source-fed systems over the 15-day operations. Feeding high concentrations of glucose resulted in rapid enrichment of fermentative bacteria under anaerobic conditions, while sulfate-reducing bacteria promoted P release in volatile fatty acids-fed systems. Metabolic analysis revealed that carbon sources not only influence gene expression in different systems, but also impact the metabolic pathways involved in nutrient cycling, which can be interrelated. For example, a significant positive correlation was observed between the abundance of P and sulfur cycling functional genes (phoD, cysD). [ABSTRACT FROM AUTHOR]

Numerous studies have shown that the continuous increase of atmosphere CO2 concentrations may have profound effects on the forest ecosystem and its functions. However, little is known about the response of belowground soil microbial communities under elevated atmospheric CO2 (eCO2) at different soil depth profiles in forest ecosystems. Here, we examined soil microbial communities at two soil depths (0 to 5 cm and 5 to 15 cm) after a 10-year eCO2 exposure using a high-throughput functional gene microarray (GeoChip). The results showed that eCO2 significantly shifted the compositions, including phylogenetic and functional gene structures, of soil microbial communities at both soil depths. Key functional genes, including those involved in carbon degradation and fixation, methane metabolism, denitrification, ammonification, and nitrogen fixation, were stimulated under eCO2 at both soil depths, although the stimulation effect of eCO2 on these functional markers was greater at the soil depth of 0 to 5 cm than of 5 to 15 cm. Moreover, a canonical correspondence analysis suggested that NO3-N, total nitrogen (TN), total carbon (TC), and leaf litter were significantly correlated with the composition of the whole microbial community. This study revealed a positive feedback of eCO2 in forest soil microbial communities, which may provide new insight for a further understanding of forest ecosystem responses to global CO2 increases.IMPORTANCE The concentration of atmospheric carbon dioxide (CO2) has continuously been increasing since the industrial revolution. Understanding the response of soil microbial communities to elevated atmospheric CO2 (eCO2) is important for predicting the contribution of the forest ecosystem to global atmospheric change. This study analyzed the effect of eCO2 on microbial communities at two soil depths (0 to 5 cm and 5 to 15 cm) in a forest ecosystem. Our findings suggest that the compositional and functional structures of microbial communities shifted under eCO2 at both soil depths. More functional genes involved in carbon, nitrogen, and phosphorus cycling were stimulated under eCO2 at the soil depth of 0 to 5 cm than at the depth of 5 to 15 cm.

Using silicate fertilizer and bacterial inoculum as biofertilizer is significant for increasing soil silicon (Si) availability and rice agronomic performance. To use microbial technology for sustainable agriculture, it is crucial to have a deeper knowledge of how microbial populations shift among the plant hosts and related compartments, as well as how they respond to various fertilization models. In this study, the effects of silicate fertilizer, a single bacterial strain Bacillus mucilagniosis as biofertilizer, and their integrated application on soil physiochemical properties and soil microbiota structure, composition, and diversity in two eco-geographically diverse races (Indica and Japonica rice) were evaluated. Plant compartment, cultivar type, and fertilizer treatments contributed to microbiome variation. Indica and Japonica harbor different root microbiota; notably, taxa enriched in the rhizosphere soil were more diverse than in the root. Bacterial genera Leptonema, Azospira, Aquabacterium, Fluviicola, Aquabacterium, Leptonema, and fungal genera Metarhizium, Malassezia, and Cladosporium all were found in the rice core microbiome. Both silicate and biofertilizer applications increase the relative abundance of Betaproteobacteria, Deltaproteobacteria, and Actinobacteria, while suppressing fungal pathogens Alternaria and Fusarium. Silicate and bacterial inoculum applications increased the soil pH, available silicon content (ASi), available phosphorous (AP), available potassium (AK), and organic carbon (OC), while reduced the total nitrogen (N). These changes were also associated with major bacterial phyla Spirochaetes, Bacteroidetes, Actinobacteria, and Proteobacteria, except for Acidobacteria, and fungal phyla Ascomycota, Mortierellomycota and unassigned fungi. Several treatment-specific biomarkers were revealed through Linear discriminant analysis effect size (LEfSe) analysis. In conclusion, the change in the structure of root-associated communities driven by plant compartment and genetics suggests dynamic interactions in the host plant microbiome. Short-term silicate and biofertilizer amendments improved soil physiochemical status and altered bacterial and saprotrophic fungal communities, which have important implications for sustainable rice production.

Basalt fiber (BF) with modification of iron (Fe-MBF) and calcium (Ca-MBF) were filled into constructed wetland-microbial fuel cell (CW-MFC) for innovative comparison of improved performance under perfluorooctanoic acid (PFOA) exposure. More enhancement on nitrogen and phosphorus removal was observed by Fe-MBF than Ca-MBF, with significant increase of ammonium (NH 4 +-N) removal by 3.36–5.66 % (p < 0.05) compared to control, even under PFOA stress. Markedly higher removal efficiency of PFOA by 4.76–8.75 % (p < 0.05) resulted from Fe-MBF, compared to Ca-MBF and control BF groups. Besides, superior electrochemical performance was found in Fe-MBF group, with maximum power density 28.65 % higher than control. Fe-MBF caused higher abundance of dominant microbes on electrodes ranged from phylum to family. Meanwhile, ammonia oxidizing bacteria like Nitrosomonas was more abundant in Fe-MBF group, which was positively correlated to NH 4 +-N and total nitrogen removal. Some other functional genera involved in denitrification and phosphorus-accumulation were enriched by Fe-MBF on electrodes and MBF carrier, including Dechloromonas , Candidatus_Competibacter , and Pseudomonas. Additionally, there were more biomarkers in Fe-MBF group, like Pseudarcobacter and Acidovorax , conducive to nitrogen and iron cycling. Most functional genes of nitrogen, carbon, and sulfur metabolisms were up-regulated with Fe-MBF filling, causing improvement on nitrogen removal. [Display omitted] • Nutrients removal of CW-MFC was more tend to be increased by Fe-MBF. • Marked higher PFOA removal by 4.76-8.75 % was found with Fe-MBF filling. • Fe-MBF caused superior electrochemical properties than Ca-MBF and BF. • Enrichment of some functional bacteria and more biomarkers were brought by Fe-MBF. • Up-regulation of N, C, and S cycling genes by Fe-MBF promoted nitrogen removal. [ABSTRACT FROM AUTHOR]

[Display omitted] • CaCO 3 was used to alleviate PFOA-induced stress on microorganisms in a porous environment. • A nano-CaCO 3 armor film was formed on cell membrane to mitigate PFOA damage. • The over-synthesis of EPSs was inhibited, while biogrowth and bioactivity were enhanced. • C6-HSL upregulated the carbon fixation and DNA replication pathways as a quorum-sensing signal molecular. • The restoration of the microbial community mitigated the enrichment of ARGs hosts, particularly denitrifiers. Perfluorooctanoic acid (PFOA), even at trace levels, can cause considerable microbial responses in porous aquatic environments. We propose the use of CaCO 3 to reduce PFOA migration through the formation of Ca-PFOA bonding, which impede the intracellular penetration of PFOA and thus alleviate PFOA-induced damage to microbes. In this work, a porous environment was simulated by sand columns (100 mm in height), and a thin layer of CaCO 3 was placed on the top of the columns. Upon the dissolution of CaCO 3 , Ca2+ reduced the zeta potential of the effluent as the influent containing 2.4 μM PFOA passed through the CaCO 3 -containing system. This promoted the bonding of Ca-PFOA, resulting in more than a twofold increase in the blocking efficiency of PFOA during the initial 13 days. A calcite calcium armor (50–100 nm) formed on the cell surface effectively reduced the oxidative damage caused by PFOA: intracellular reactive oxygen species were reduced by 39.3 %, and bioactivity (in adenosine triphosphate) increased by 454.5 %. The alleviation of PFOA-induced stress reduced the synthesis of extracellular polymerizing substances by 67.1 %, but microbial growth remained healthy. CaCO 3 introduction stimulated quorum sensing through the generation of C6-HSL to up-regulate the carbon fixation pathway. Under PFOA-induced stress, CaCO 3 introduction resulted in a microbial community that was similar to that in the absence of PFOA; additionally, the dominance of denitrifying bacteria as hosts of antibiotic resistance genes (ARGs) decreased, resulting in minimal or no impact on water purification efficiency. Additionally, microbial-induced carbonate precipitation functional microorganisms were enriched as Ca2+ alleviated PFOA-induced stress. In conclusion, CaCO 3 effectively alleviated PFOA-induced stress and reduced the environmental effects of PFOA on the porous aquatic environment. Microbial enhancement strategy provides a new perspective for PFOA pollution remediation. [ABSTRACT FROM AUTHOR]

Continuous cropping systems are the leading cause of decreased soil biological environments in terms of unstable microbial population and diversity index. Nonetheless, their responses to consecutive peanut monocropping cycles have not been thoroughly investigated. In this study, the structure and abundance of microbial communities were characterized using pyrosequencing-based approach in peanut monocropping cycles for three consecutive years. The results showed that continuous peanut cultivation led to a substantial decrease in soil microbial abundance and diversity from initial cropping cycle (T1) to later cropping cycle (T3). Peanut rhizosphere soil had Actinobacteria, Protobacteria, and Gemmatimonadetes as the major bacterial phyla. Ascomycota, Basidiomycota were the major fungal phylum, while Crenarchaeota and Euryarchaeota were the most dominant phyla of archaea. Several bacterial, fungal and archaeal taxa were significantly changed in abundance under continuous peanut cultivation. Bacterial orders, Actinomycetales, Rhodospirillales and Sphingomonadales showed decreasing trends from T1>T2>T3. While, pathogenic fungi Phoma was increased and beneficial fungal taxa Glomeraceae decreased under continuous monocropping. Moreover, Archaeal order Nitrososphaerales observed less abundant in first two cycles (T1&T2), however, it increased in third cycle (T3), whereas, Thermoplasmata exhibit decreased trends throughout consecutive monocropping. Taken together, we have shown the taxonomic profiles of peanut rhizosphere communities that were affected by continuous peanut monocropping. The results obtained from this study pave ways towards a better understanding of the peanut rhizosphere soil microbial communities in response to continuous cropping cycles, which could be used as bioindicator to monitor soil quality, plant health and land management practices. [ABSTRACT FROM AUTHOR]

Continuous cropping systems are the leading cause of decreased soil biological environments in terms of unstable microbial population and diversity index. Nonetheless, their responses to consecutive peanut monocropping cycles have not been thoroughly investigated. In this study, the structure and abundance of microbial communities were characterized using pyrosequencing-based approach in peanut monocropping cycles for three consecutive years. The results showed that continuous peanut cultivation led to a substantial decrease in soil microbial abundance and diversity from initial cropping cycle (T1) to later cropping cycle (T3). Peanut rhizosphere soil had Actinobacteria, Protobacteria, and Gemmatimonadetes as the major bacterial phyla. Ascomycota, Basidiomycota were the major fungal phylum, while Crenarchaeota and Euryarchaeota were the most dominant phyla of archaea. Several bacterial, fungal and archaeal taxa were significantly changed in abundance under continuous peanut cultivation. Bacterial orders, Actinomycetales, Rhodospirillales and Sphingomonadales showed decreasing trends from T1>T2>T3. While, pathogenic fungi Phoma was increased and beneficial fungal taxa Glomeraceae decreased under continuous monocropping. Moreover, Archaeal order Nitrososphaerales observed less abundant in first two cycles (T1&T2), however, it increased in third cycle (T3), whereas, Thermoplasmata exhibit decreased trends throughout consecutive monocropping. Taken together, we have shown the taxonomic profiles of peanut rhizosphere communities that were affected by continuous peanut monocropping. The results obtained from this study pave ways towards a better understanding of the peanut rhizosphere soil microbial communities in response to continuous cropping cycles, which could be used as bioindicator to monitor soil quality, plant health and land management practices.

Novel molecular platforms are available for identifying (ID) the causative agents of microbial infections and generating antimicrobial susceptibility testing (AST) profiles, which can inform the suitable course of treatment. Many methods claim to perform AST in minutes or hours, often ignoring the need for time-consuming steps such as enrichment cultures and isolation of pure cultures. In clinical microbiology laboratories, an infectious microbial must first be cultured (overnight to days) and identified at the species level, followed by a subsequent AST with an additional turnaround time of 12–48 h due to the need for regrowth of the organism in the absence and presence of relevant antibiotics. Here, we present an electrochemical-based direct-from-specimen ID/AST method for reporting directly from unprocessed urine and blood in hours. In a limit of detection study of 0.5-ml whole blood samples for point-of-care and pediatric applications, 16.7% (4/24) of samples contrived at 2 CFU/ml and 100% (24/24) of samples contrived at 6 CFU/ml were reported positive in 6.5 h, indicating a limit of detection of 6 CFU/ml. In a separate direct-from-specimen AST study, the categorical susceptibility was reported correctly for blinded susceptible, intermediate, resistant, and polymicrobial contrived specimens in 4 h.

From the homeostasis of human health to the cycling of Earth's elements, microbial activities underlie environmental, medical and industrial processes. These activities occur in chemical and physical landscapes that are highly dynamic and experienced by bacteria as fluctuations. In this review, we first discuss how bacteria can experience both spatial and temporal heterogeneity in their environments as temporal fluctuations of various timescales (seconds to seasons) and types (nutrient, sunlight, fluid flow, etc.). We then focus primarily on nutrient fluctuations to discuss how bacterial communities, populations and single cells respond to environmental fluctuations. Overall, we find that environmental fluctuations are ubiquitous and diverse, and strongly shape microbial behavior, ecology and evolution when compared with environments in which conditions remain constant over time. We hope this review may serve as a guide toward understanding the significance of environmental fluctuations in microbial life, such that their contributions and implications can be better assessed and exploited. [ABSTRACT FROM AUTHOR]

Soil compaction combined with water deficit may cause a significant decrease in microbial functions. Two texture-contrast sugarcane soils were exposed to the combined stresses of compaction and drought, and microbial responses were investigated going into stress (phase I) as well as their response coming out of stress (phase II). We artificially applied a gradient of bulk densities (0.9–1.5 g cm−3) and water-filled pore space (WFPS, 21–100%) to simulate compaction and drought conditions. PCA results clearly demonstrated the separation of impacts of soil types and the moisture treatments. Additionally, it is evidenced that soil texture can strongly regulate soil microbial response to compaction, as finer texture provides a better local environment for soil microbial community growth, supported by two folds higher microbial biomass carbon content and significantly higher CO 2 respiration in Nitisol (clayey soil) than Planosol (sandy soil). The Structural Equation Modelling (SEM) analysis showed a strongly direct negative effect (path coefficient= −0.59 to −0.61, p < 0.01) of WFPS on the labile C at Phase I and Phase II in both Nitisol than Planosol. Further, soil moisture would govern microbial respiration cross soil types, particularly after removal of compactions which supported by the SEM result (path coefficient= −0.36 to −0.47, p < 0.05). Results from this study have implied the importance in considering the combined effects of soil texture and moisture in assessing compaction impacts and developing associated management regimes. [Display omitted] • Microbial response to compaction varied with soil moisture levels and texture. • Water filled pore space regulates microbial activity at the low moisture level. • Clayey soil showed a greater microbial response to compaction and moisture level. • Clayey soil showed higher resistance to compaction in comparison to sandy soil. [ABSTRACT FROM AUTHOR]

Animal feeding behavior and diet composition determine rumen fermentation responses and its microbial characteristics. This study aimed to evaluate the rumen fermentation kinetics of domestic ruminants feeding diets with or without condensed tannins (CT). Holstein dairy cows, Nelore beef cattle, Mediterranean water buffalo, Santa Inês sheep and Saanen goats were used as inoculum donors (three animals of each species). The substrates were maize silage (Zea mays), fresh elephant grass (Pennisetum purpureum), Tifton-85 hay (Cynodon spp.) and fresh alfalfa (Medicago sativa). Acacia (Acacia molissima) extract was used as the external CT source. The in vitro semi-automated gas production technique was used to assess the fermentation kinetics. The experimental design was completely randomized with five inoculum sources (animal species), four substrates (feeds) and two treatments (with or without extract). The inclusion of CT caused more severe effects in grazing ruminants than selector ruminants.

Numerous studies have shown that the continuous increase of atmosphere CO2 concentrations may have profound effects on the forest ecosystem and its functions. However, little is known about the response of belowground soil microbial communities under elevated atmospheric CO2 (eCO2) at different soil depth profiles in forest ecosystems. Here, we examined soil microbial communities at two soil depths (0 to 5 cm and 5 to 15 cm) after a 10-year eCO2 exposure using a high-throughput functional gene microarray (GeoChip). The results showed that eCO2significantly shifted the compositions, including phylogenetic and functional gene structures, of soil microbial communities at both soil depths. Key functional genes, including those involved in carbon degradation and fixation, methane metabolism, denitrification, ammonification, and nitrogen fixation, were stimulated under eCO2 at both soil depths, although the stimulation effect of eCO2 on these functional markers was greater at the soil depth of 0 to 5 cm than of 5 to 15 cm. Moreover, a canonical correspondence analysis suggested that NO3-N, total nitrogen (TN), total carbon (TC), and leaf litter were significantly correlated with the composition of the whole microbial community. This study revealed a positive feedback of eCO2 in forest soil microbial communities, which may provide new insight for a further understanding of forest ecosystem responses to global CO2 increases. IMPORTANCE The concentration of atmospheric carbon dioxide (CO2) has continuously been increasing since the industrial revolution. Understanding the response of soil microbial communities to elevated atmospheric CO2(eCO2) is important for predicting the contribution of the forest ecosystem to global atmospheric change. This study analyzed the effect of eCO2 on microbial communities at two soil depths (0 to 5 cm and 5 to 15 cm) in a forest ecosystem. Our findings suggest that the compositional and functional structures of microbial communities shifted under eCO2 at both soil depths. More functional genes involved in carbon, nitrogen, and phosphorus cycling were stimulated under eCO2 at the soil depth of 0 to 5 cm than at thedepth of 5 to 15 cm. [ABSTRACT FROM AUTHOR]

In this study, the transformation of the sludge-related extracellular polymeric substances (EPS) during mesophilic anaerobic digestion was characterized to assess the effect of hydraulic retention time (HRT) on reactor deterioration/restarting. Experimental HRT variations from 20 to 15 and 10 d was implemented for deterioration, and from 10 to 20 d for restarting. Long-term digestion at the lowest HRT (10 d) resulted in significant accumulation of hydrolyzed hydrophobic materials and volatile fatty acids in the supernatants. Moreover, less efficient hydrolysis of sludge EPS, especially of proteins related substances which contributed to the deterioration of digester. Aceticlastic species of Methanosaetaceae decreased from 36.3% to 27.6% with decreasing HRT (20–10 d), while hydrogenotrophic methanogens ( Methanomicrobiales and Methanobacteriales ) increased from 30.4% to 38.3%. Proteins and soluble microbial byproducts related fluorophores in feed sludge for the anaerobic digester changed insignificantly at high HRT, whereas the fluorescent intensity of fulvic acid-like components declined sharply once the digestion deteriorated. [ABSTRACT FROM AUTHOR]

Marine environments contain diverse halogenated organic compounds (HOCs), both anthropogenic and natural, nourishing a group of versatile organohalide-respiring bacteria (OHRB). Here, we identified a novel OHRB (Peptococcaceae DCH) with conserved motifs but phylogenetically diverse reductive dehalogenase catalytic subunit (RdhAs) from marine enrichment culture. Further analyses clearly demonstrate the horizontal gene transfer of rdhA s among marine OHRB. Moreover, 2,4,6-trichlorophenol (TCP) was dechlorinated to 2,4-dichlorophenol and terminated at 4-chlorophenol in culture. Dendrosporobacter and Methanosarcina were the two dominant genera, and the constructed and verified metabolic pathways clearly demonstrated that the former provided various substrates for other microbes, while the latter drew nutrients, but might provide little benefit to microbial dehalogenation. Furthermore, Dendrosporobacter could readily adapt to TCP, and sporulation-related proteins of Dendrosporobacter were significantly upregulated in TCP-free controls, whereas other microbes ( e.g. , Methanosarcina and Aminivibrio ) became more active, providing insights into how HOCs shape microbial communities. Additionally, sulfate could affect the dechlorination of Peptococcaceae DCH, but not debromination. Considering their electron accessibility and energy generation, the results clearly demonstrate that bromophenols are more suitable than chlorophenols for the enrichment of OHRB in marine environments. This study will greatly enhance our understanding of marine OHRB ( rdhA s), auxiliary microbes, and microbial HOC adaptive mechanisms.

A large in-service petrochemical enterprises in Northeast China was taken as the research object, and the Collaborative Monitored Natural Attenuation (CMNA) for soil and groundwater pollution was carried out to remedy combined pollution and reduce environmental risks. The pollutants distributions were obtained based on detailed regional investigation (Mar. 2019), and feature pollutants in soil and groundwater were then screened. The spatiotemporal variations of feature pollutants and relative microbial responses were explored during the CMNA process. Furthermore, the CMNA efficiency of the contaminated site at initial stage was evaluated by calculation of natural attenuation rate constant. The results showed that the feature pollutants in soil were 2,2′,5,5′-tetrachlorobiphenyl (2,2′,5,5′-TCB) and petroleum hydrocarbons (C 10 ∼C 40), and the feature pollutant in groundwater was 1,2-dichloroethane (1,2-DCA). The concentrations of all feature pollutants decreased continuously during four years of monitoring. Feature pollutants played a dominant role in the variability of microbial species both in soil and groundwater, increasing the relative abundance of petroleum tolerant/biodegradation bacteria, such as Actinobacteria, Proteobacteria and Acidobacteriota. The average natural attenuation rate constant of 2,2′,5,5′-TCB and C 10 ∼C 40 in soil was 0.0012 d−1 and 0.0010 d−1, respectively, meeting the screening value after four years' attenuation. The average natural attenuation rate constant of 1,2-DCA was 0.0004 d−1, which need strengthening measures to improve the attenuation efficiency. [Display omitted] • 2,2′,5,5′-tetrachlorobiphenyl, C 10 ∼C 40 , 1,2-dichloroethane were feature pollutants. • Concentrations of feature pollutants decreased continuously. • Feature pollutants led to increase of petro-hydrocarbon degrading bacteria. • Soil pollutants reached screening value after four year's attenuation. • 1,2-dichloroethane attenuation (0.0004 d−1) in groundwater need to be enhanced. [ABSTRACT FROM AUTHOR]

[Display omitted] • River bank filtration could be stabilized with 51%, 36%, and 21% decrease of Fe2+, Mn2+ and NH 4 +, respectively, after 21 d of water extraction. • Detailed redox zonation mapping of geology, chemistry, microbiology is constructed. • The redox zones are divided by redox indices of DO, NO 3 −, Fe2+, Mn2+, and SO 4 2-. • Seasonality results in a 30% fluctuation of Fe2+ and Mn2+ contents in redox zones. • Fe2+ and Mn2+ contributed most to microbial variability with dominant bacteria of Pseudomonas, Flavobacterium, and Limnobacter. The redox conditions strongly affect redox kinetics, hydrochemical composition and microbial reactions under river bank filtration (RBF). For investigating the redox conditions, zonation factors, and microbial responses in a typical RBF with high Fe2+ and Mn2+ contents, three wells were established 20 m apart perpendicular to the south bank of the Songhua River with a constant flow rate of 400 m3/h. Redox zonation was identified from the redox sequences, redox products, reactions identified and seasonality. High-throughput sequencing, principal coordinates analysis, and redundancy analysis were used to identify the microbial responses to redox zonation. The results indicated that the RBF was stabilized after 21 d of water extraction with a 51%, 36% and 21% decrease of Fe2+, Mn2+ and NH 4 + contents, respectively. Feature redox indices varied with strong regularity in the horizontal and vertical filtration directions, and the filtration area could be divided into O 2 /NO 3 −, Fe/Mn, and SO 4 2− reduction zones. Seasonality resulted in markedly fluctuation of Fe2+ and Mn2+ contents in groundwater. Pseudomonas, Flavobacterium , and Limnobacter were the dominant bacteria in the O 2 /NO 3 −, Fe/Mn, and SO 4 2− reduction zones, respectively. DO explained 21.1% of microbial variability in the fluctuation zone, while Mn2+ and Fe2+ explained 27.7%, and 26.2%, respectively, of microbial variability in the saturated zone. [ABSTRACT FROM AUTHOR]

Globally, around 70% of waste is disposed of in open dumps or landfill sites, with the leachate generated from these sites containing high concentrations of organic and inorganic compounds, which will adversely affect aquatic environments if discharged without proper treatment. Anaerobic digestion of landfill leachate is an environmentally-friendly method that efficiently converts organic compounds into methane-rich biogas. However, the widespread application of anaerobic digestion has been hindered by poor system stability, low methanogenic activity and a high level of volatile fatty acids (VFAs) accumulation, increasing the operational costs of treatment. Conductive materials can be added to the digester to improve the performance of anaerobic digestion in landfill leachate treatment systems and studies reporting the use of conductive materials for this purpose are hereby thoroughly reviewed. The mechanism of microbial growth and enrichment by conductive materials is discussed, as well as the subsequent effect on waste metabolism, methane production, syntrophic relationships and interspecies electron transfer. The porous structure, specific surface area and conductivity of conductive materials play vital roles in the facilitation of syntrophic relationships between fermentative bacteria and methanogenic archaea. In addition, the mediation of direct interspecies electron transfer (DIET) by conductive materials increases the methane content of biogas from 16% to 60% as compared to indirect interspecies electron transfer (IIET) in conventional anaerobic digestion systems. This review identifies research gaps in the field of material-amended anaerobic systems, suggesting future research directions including investigations into combined chemical-biological treatments for landfill leachate, microbial management using conductive materials for efficient pollutant removal and the capacity for material reuse. Moreover, findings of this review provide a reference for the efficient and large-scale treatment of landfill leachate by anaerobic digestion with conductive materials. [Display omitted] • Challenges in anaerobic digestion of landfill leachate are reviewed. • Types of conductive materials are discussed for improvement of anaerobic digestion. • Conductive materials enhance electron transfer and syntropy among anaerobes. • Prospective on conductive materials for landfill leachate treatment are stressed. [ABSTRACT FROM AUTHOR]

The aim with this study was to use interdisciplinary techniques and visions in order to identify the modulating effect of tannins on adaptive factors in lactating goats with different genetic patterns, through the assessment of digestibility and nutrient intake, ingestive behavior and rumen metagenome. We used in this study 8 of the Repartida ecotype and 6 of the Canindé breed goats, on average five years old, distributed in a completely randomized design, in a 2 × 2 factorial design, with two genetic groups and two diets. The applied diets were: basal diet and inclusion of 5% commercial tannin extract in basal diet. Intake and apparent digestibility of nutrients were evaluated, based on the quantification of the offered feed and refusals, and bromatological evaluation of samples of the offered feed, refusals and feces. Behavioral data were collected in 24-h continuous visual observations. The ruminal fluid was collected and DNA extraction, sequencing, and evaluation of relative abundance of the rumen microbiome were performed. The data obtained were analyzed statistically, through analysis of variance with 5% significance and, when necessary, a comparison of means test was applied. In this preliminary findings was observed that the genetic group factor caused changes in the number of chews and the relative abundance of microorganisms (P = 0.0290 and P = 0.0051). The diet factor influenced digestibility, which better values were observed for the tannin diet (P = 0.0049), in addition, it promoted changes in the rumen microbiota, with a beneficial modulatory characteristic. The inclusion of 5% tannin extract from Acacia mearnsii modulates the rumen microbiome, improving the apparent digestibility of nutrients without affecting the feed intake of goats from the Repartida and Canindé genetic groups., (Copyright © 2022 Elsevier Ltd. All rights reserved.)

[Display omitted] • Deciphering multi-faceted influences of BC addition on AD under TC pressure. • BC enhanced syntrophic methanogenesis to alleviate the inhibition caused by TC. • BC elevated TC removal efficiency by 24–158% via boosting biodegradation pathway. • BC declined ARG contents via mitigating potential host (Firmicutes) enrichment. This study explored the influence of biochar (BC) on anaerobic digestion (AD) of swine manure under various tetracycline (TC) pressures. It was found that both low (0.5 mg/L) and high (50 mg/L) TC pressures inhibited AD performance, while BC mitigated it in multi-facets. Under high TC pressure, BC accelerated syntrophic methanogenesis by boosting direct interspecies electron transfer pathway. The TC removal efficiencies were enhanced by 24.3–158.2% with BC assistance, which was attributed to the enhanced biological degradation rather than BC's physiochemical adsorption. Moreover, BC possibly acted as a protective role to alleviate intensive extracellular polymeric substances secretion under TC pressures. Integrated microbial community, metabolic function predicting, and antibiotic resistance genes (ARG) analysis revealed that BC addition not only enriched Anaerolineceae , which likely responsible for the 24.2–41.9% higher level expression of organics metabolic pathways and xenobiotics biodegradation, but also reduced ARG abundance by controlling the potential ARG host (Firmicutes) proliferation. [ABSTRACT FROM AUTHOR]

Novel molecular platforms are available for identifying (ID) the causative agents of microbial infections and generating antimicrobial susceptibility testing (AST) profiles, which can inform the suitable course of treatment. Many methods claim to perform AST in minutes or hours, often ignoring the need for time-consuming steps such as enrichment cultures and isolation of pure cultures. In clinical microbiology laboratories, an infectious microbial must first be cultured (overnight to days) and identified at the species level, followed by a subsequent AST with an additional turnaround time of 12-48 h due to the need for regrowth of the organism in the absence and presence of relevant antibiotics. Here, we present an electrochemical-based direct-from-specimen ID/AST method for reporting directly from unprocessed urine and blood in hours. In a limit of detection study of 0.5-ml whole blood samples for point-of-care and pediatric applications, 16.7% (4/24) of samples contrived at 2 CFU/ml and 100% (24/24) of samples contrived at 6 CFU/ml were reported positive in 6.5 h, indicating a limit of detection of 6 CFU/ml. In a separate direct-from-specimen AST study, the categorical susceptibility was reported correctly for blinded susceptible, intermediate, resistant, and polymicrobial contrived specimens in 4 h., Competing Interests: As authors of this study (JC, ENa, ENu, VG), we declare that we are employed by GeneFluidics, a nonacademic, commercial company., (Copyright © 2021 Chen, Navarro, Nuñez and Gau.)

Microbial electrolysis cells (MECs) had a potential to improve antibiotics removal from wastewater. However, research on antibiotics removal from concentrated sludge using MECs is still very limited. In this study, antibiotics removal and microbial responses in MECs treating concentrated sludge under different applied voltages (0.3 V–1.5 V) were investigated. Results showed that antibiotics removal efficiencies at 0.6 V and 1.0 V were 16.7%–26.6% higher than other applied voltages. The applied voltages had no obvious effects on the viability, activity and composition of microorganisms in the suspended sludge even up to 1.5 V. Bioelectrodes exhibited higher bioelectrocatalytic activity and denser microbial aggregation at 0.6 V and 1.0 V, under which higher antibiotics removal was also achieved. The enhanced removal of antibiotics at the optimal applied voltages was mainly contributed by the bioaugmentation of electrodes, but was irrelative with the electrochemical reaction and the microbial responses in suspended sludge. Unlabelled Image • Antibiotics removal in MECs at room temperature was comparable to mesophilic AD. • Antibiotics removal from concentrated sludge was enhanced at 0.6 V and 1.0 V. • Enhanced antibiotics removal in MECs was irrelative with the suspended sludge. • Bioaugmentation of electrodes contributed to the enhanced antibiotics removal. [ABSTRACT FROM AUTHOR]

Simple Summary: Inoculum from different feeding types of the ruminant species host has unequal tolerance and effects to condensed tannin (CT) due to their respective feeding strategies behavior producing different ruminal microbiota profiles. This paper describes that in long term incubation, CT plant extract addition affects in vitro fermentation kinetics more severely in grazing ruminant than browsing ruminants. Animal feeding behavior and diet composition determine rumen fermentation responses and its microbial characteristics. This study aimed to evaluate the rumen fermentation kinetics of domestic ruminants feeding diets with or without condensed tannins (CT). Holstein dairy cows, Nelore beef cattle, Mediterranean water buffalo, Santa Inês sheep and Saanen goats were used as inoculum donors (three animals of each species). The substrates were maize silage (Zea mays), fresh elephant grass (Pennisetum purpureum), Tifton-85 hay (Cynodon spp.) and fresh alfalfa (Medicago sativa). Acacia (Acacia molissima) extract was used as the external CT source. The in vitro semi-automated gas production technique was used to assess the fermentation kinetics. The experimental design was completely randomized with five inoculum sources (animal species), four substrates (feeds) and two treatments (with or without extract). The inclusion of CT caused more severe effects in grazing ruminants than selector ruminants. [ABSTRACT FROM AUTHOR]

Extensive studies on anaerobic fermentation of waste activated sludge (WAS) for volatile fatty acids (VFAs) production focused on the effects of operating parameters and pretreatment methods, and little information is available for those of organic pollutants which were absorbed on sludge. The influence of sulfadiazine (SDZ), a typical antibiotic pollutant in WAS, on VFAs production during anaerobic fermentation was investigated in this study. The accumulation of VFAs was remarkably affected in the presence of SDZ. When the content of SDZ was 50 mg per kilogram dry sludge the concentration of VFAs from sludge was 2032.8 mg COD/L, much higher than that of control (1540.2 mg COD/L). Mechanism investigation revealed that the content of extracellular polymeric substances (EPS) from sludge was increased due to the presence of SDZ, which provided more substrates, i.e., protein and carbohydrate, and created a favorable environment for anaerobes. The hydrolysis and acidification of WAS were stimulated by SDZ, and the functional microorganisms were advantageous to VFAs production. The activities of protease, α-glucosidase and acetate kinase were promoted when SDZ occurred, which were beneficial for hydrolysis and acidification. The effect of SDZ on pure strains further confirmed that the formation of VFAs during anaerobic fermentation was stimulated by SDZ., (Copyright © 2018 Elsevier Ltd. All rights reserved.)

Numerous studies have shown that the continuous increase of atmosphere CO 2 concentrations may have profound effects on the forest ecosystem and its functions. However, little is known about the response of belowground soil microbial communities under elevated atmospheric CO 2 (eCO 2 ) at different soil depth profiles in forest ecosystems. Here, we examined soil microbial communities at two soil depths (0 to 5 cm and 5 to 15 cm) after a 10-year eCO 2 exposure using a high-throughput functional gene microarray (GeoChip). The results showed that eCO 2 significantly shifted the compositions, including phylogenetic and functional gene structures, of soil microbial communities at both soil depths. Key functional genes, including those involved in carbon degradation and fixation, methane metabolism, denitrification, ammonification, and nitrogen fixation, were stimulated under eCO 2 at both soil depths, although the stimulation effect of eCO 2 on these functional markers was greater at the soil depth of 0 to 5 cm than of 5 to 15 cm. Moreover, a canonical correspondence analysis suggested that NO 3 -N, total nitrogen (TN), total carbon (TC), and leaf litter were significantly correlated with the composition of the whole microbial community. This study revealed a positive feedback of eCO 2 in forest soil microbial communities, which may provide new insight for a further understanding of forest ecosystem responses to global CO 2 increases. IMPORTANCE The concentration of atmospheric carbon dioxide (CO 2 ) has continuously been increasing since the industrial revolution. Understanding the response of soil microbial communities to elevated atmospheric CO 2 (eCO 2 ) is important for predicting the contribution of the forest ecosystem to global atmospheric change. This study analyzed the effect of eCO 2 on microbial communities at two soil depths (0 to 5 cm and 5 to 15 cm) in a forest ecosystem. Our findings suggest that the compositional and functional structures of microbial communities shifted under eCO 2 at both soil depths. More functional genes involved in carbon, nitrogen, and phosphorus cycling were stimulated under eCO 2 at the soil depth of 0 to 5 cm than at the depth of 5 to 15 cm., (Copyright © 2017 American Society for Microbiology.)