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Nitrogen (N) deposition is a component of global change that has considerable impact on belowground carbon (C) dynamics. Plant growth stimulation and alterations of fungal community composition and functions are the main mechanisms driving soil C gains following N deposition in N-limited temperate forests. In N-rich tropical forests, however, N deposition generally has minor effects on plant growth; consequently, C storage in soil may strongly depend on the microbial processes that drive litter and soil organic matter decomposition. Here, we investigated how microbial functions in old-growth tropical forest soil responded to 13 years of N addition at four rates: 0 (Control), 50 (Low-N), 100 (Medium-N), and 150 (High-N) kg N ha-1  year-1 . Soil organic carbon (SOC) content increased under High-N, corresponding to a 33% decrease in CO2 efflux, and reductions in relative abundances of bacteria as well as genes responsible for cellulose and chitin degradation. A 113% increase in N2 O emission was positively correlated with soil acidification and an increase in the relative abundances of denitrification genes (narG and norB). Soil acidification induced by N addition decreased available P concentrations, and was associated with reductions in the relative abundance of phytase. The decreased relative abundance of bacteria and key functional gene groups for C degradation were related to slower SOC decomposition, indicating the key mechanisms driving SOC accumulation in the tropical forest soil subjected to High-N addition. However, changes in microbial functional groups associated with N and P cycling led to coincidentally large increases in N2 O emissions, and exacerbated soil P deficiency. These two factors partially offset the perceived beneficial effects of N addition on SOC storage in tropical forest soils. These findings suggest a potential to incorporate microbial community and functions into Earth system models considering their effects on greenhouse gas emission, biogeochemical processes, and biodiversity of tropical ecosystems.

Nitrogen (N) deposition is a component of global change that has considerable impact on belowground carbon (C) dynamics. Plant growth stimulation and alterations of fungal community composition and functions are the main mechanisms driving soil C gains following N deposition in N-limited temperate forests. In N-rich tropical forests, however, N deposition generally has minor effects on plant growth; consequently, C storage in soil may strongly depend on the microbial processes that drive litter and soil organic matter decomposition. Here, we investigated how microbial functions in old-growth tropical forest soil responded to 13 years of N addition at four rates: 0 (Control), 50 (Low-N), 100 (Medium-N), and 150 (High-N) kg N ha-1  year-1 . Soil organic carbon (SOC) content increased under High-N, corresponding to a 33% decrease in CO2 efflux, and reductions in relative abundances of bacteria as well as genes responsible for cellulose and chitin degradation. A 113% increase in N2 O emission was positively correlated with soil acidification and an increase in the relative abundances of denitrification genes (narG and norB). Soil acidification induced by N addition decreased available P concentrations, and was associated with reductions in the relative abundance of phytase. The decreased relative abundance of bacteria and key functional gene groups for C degradation were related to slower SOC decomposition, indicating the key mechanisms driving SOC accumulation in the tropical forest soil subjected to High-N addition. However, changes in microbial functional groups associated with N and P cycling led to coincidentally large increases in N2 O emissions, and exacerbated soil P deficiency. These two factors partially offset the perceived beneficial effects of N addition on SOC storage in tropical forest soils. These findings suggest a potential to incorporate microbial community and functions into Earth system models considering their effects on greenhouse gas emission, biogeochemical processes, and biodiversity of tropical ecosystems.

Abstract Background Verticillium wilt of olive (VWO) is caused by the soilborne fungal pathogen Verticillium dahliae. One of the best VWO management measures is the use of tolerant/resistant olive cultivars. Knowledge on the olive-associated microbiome and its potential relationship with tolerance to biotic constraints is almost null. The aims of this work are (1) to describe the structure, functionality, and co-occurrence interactions of the belowground (root endosphere and rhizosphere) microbial communities of two olive cultivars qualified as tolerant (Frantoio) and susceptible (Picual) to VWO, and (2) to assess whether these communities contribute to their differential disease susceptibility level. Results Minor differences in alpha and beta diversities of root-associated microbiota were detected between olive cultivars regardless of whether they were inoculated or not with the defoliating pathotype of V. dahliae. Nevertheless, significant differences were found in taxonomic composition of non-inoculated plants’ communities, “Frantoio” showing a higher abundance of beneficial genera in contrast to “Picual” that exhibited major abundance of potential deleterious genera. Upon inoculation with V. dahliae, significant changes at taxonomic level were found mostly in Picual plants. Relevant topological alterations were observed in microbial communities’ co-occurrence interactions after inoculation, both at structural and functional level, and in the positive/negative edges ratio. In the root endosphere, Frantoio communities switched to highly connected and low modularized networks, while Picual communities showed a sharply different behavior. In the rhizosphere, V. dahliae only irrupted in the microbial networks of Picual plants. Conclusions The belowground microbial communities of the two olive cultivars are very similar and pathogen introduction did not provoke significant alterations in their structure and functionality. However, notable differences were found in their networks in response to the inoculation. This phenomenon was more evident in the root endosphere communities. Thus, a correlation between modifications in the microbial networks of this microhabitat and susceptibility/tolerance to a soilborne pathogen was found. Moreover, V. dahliae irruption in the Picual microbial networks suggests a stronger impact on the belowground microbial communities of this cultivar upon inoculation. Our results suggest that changes in the co-occurrence interactions may explain, at least partially, the differential VWO susceptibility of the tested olive cultivars. Video abstract.

Changes in root exudates and rhizospheric microbial functional capacities involved in carbon (C) decomposition and nitrogen (N) transformation of aluminum (Al)-tolerant and Al-sensitive soybean genotypes were investigated under Al stress. Rhizosphere soils were collected from rhizobox systems with two soybean genotypes. A wide range of microbial functional capacities were determined by functional gene arrays. Microbial functional capacities of rhizospheres were distinct between Al-tolerant and Al-sensitive genotypes, which were related to exchangeable Al concentrations. Functional capacities associated with decomposition of chemically recalcitrant C were lower in Al-tolerant than Al-sensitive genotypes, which was negatively correlated with the secretion rate of succinic acid. Microbial functional capacities were higher for nitrification but lower for denitrification in the rhizosphere of Al-tolerant than Al-sensitive genotype, which coincided with higher succinic acid secretion and lower abundance of microbial oxygen stress genes. Soybean biomass increased logarithmically with nitrification capacities. We concluded that exchangeable Al concentrations, root exudation, and microbial C and N cycling capacities were intrinsically linked, which served as a key mechanism for legume genotypes toward enhancing tolerance to Al stress occurring in acid soils. [ABSTRACT FROM AUTHOR]

【Objective】 This study analyzed the microbial community composition and variation of Leersia hexandra Swartz ecological floating bed in the process of purifying wastewater. 【Method】 High throughput Illumina Miseq was used to analyze the microbial community composition and variation in the process of purifying wastewater. 【Result】 Results showed that the microbial diversity and community composition changed with time, and the dominant microbial groups and relative abundances were different. Planting Leersia hexandra Swartz treatment increased wastewater microbial diversity with time. Proteobacteria was predominant microbes in the four treatments. The relative abundance of Bacteroidetes increased and Firmicutes decreased under planting Leersia hexandra Swartz and planting Leersia hexandra Swartz with aerobic treatments. Flavobacterium, Hydrogenophaga and Rhodobacter were the dominant genus in the four treatments. The planting Leersia hexandra Swartz with aerobic treatment was profitable for growth and propagation of carbon cycle related microbes such as sediminibacterium, Emticicia, Novosphingobium, Luteolibacter, Comamonadaceae and Erythrobacteraceae. For planting Leersia hexandra Swartz with anaerobic treatment, the phosphorus solubilizing microbes such as Pseudomonas, Flavobacterium and Rhodobacter were enriched. 【Conclusion】 The microbial diversity and community composition was no obvious relation with wastewater purification. The cluster and PCOA analyses indicated the microbial compositions clustered together for planting Leersia hexandra Swartz with anaerobic treatment and static wastewater control, and which were similar for planting Leersia hexandra Swartz and planting Leersia hexandra Swartz with aerobic treatment. The planting Leersia hexandra Swartz with aerobic treatment would be helpful to remove COD. The planting Leersia hexandra Swartz with anaerobic treatment was helpful to phosphorus degradation. [ABSTRACT FROM AUTHOR]

The objective of the present study was to increase understanding of the effects of heavy metal pollution and soil properties on microorganisms in relation to the biomass and microbial functional community. Soil samples were collected from aged polluted and reference sites on a floodplain. The soil Cu, Zn and Pb total concentrations were much higher at the polluted sites (average 231.6–309.9 mg kg−1, 195.7–233.0 mg kg−1, and 72.4–86.0 mg kg−1, respectively) than at the reference site (average 33.3–44.0 mg kg−1, 76.7–98.0 mg kg−1, and 30.8–41.6 mg kg−1, respectively), while the available heavy metal concentrations in CaCl2 extraction were similar in all sites. Small seasonal variations in the size of microbial biomass were observed. Ambient soil properties (e.g. total C, N, pH, moisture content, and CEC) affected the soil microbial biomass more than the heavy metal pollution. However, the aged pollution tended to impact on the composition of the microbial community. PICT (pollution-induced community tolerance) test using BIOLOG Ecoplates showed enhanced tolerance of the microbial community to Cu stress in the polluted site. In non polluted but low nutrient, low pH and low moisture soil, the microbial biomass was lower and the microbial community was more vulnerable to Cu stress. In spite of the low heavy metal availability due to ageing, the BIOLOG technique provided sensitive detection of microbial community level changes in PICT analysis. [ABSTRACT FROM AUTHOR]

Rice grown in arsenic (As)-contaminated soils will have an elevated As concentration in the edible parts and lower yield due to the stressful growing environment. Silicon fertilizer is a soil amendment that can prevent As bioaccumulation and increase rice yield. This may be due to chemical interactions between silicon and As, but we hypothesized that silicon fertilization would improve soil microbial functions that control the bioavailable As concentration and improve the growing environment for rice in As-contaminated agroecosystems. We tested the hypothesis on two geographically different rice varieties (Indica and Japonica) grown on As spiked soils. Rice grown in pots amended with slag-based silicon fertilizer (silicate fertilizer) at a rate of 2 Mg ha−1 had a significantly lower As concentration in the grain, with 28% less As in the grain of Indica rice and 30% less As in the Japonica rice grain. The rice grain yield was 20–22% greater in these rice varieties. There are several reasons that As uptake declined in the rice grain, including: (i) a reduction in As bioavailability, likely because As was absorbed to amorphous and crystalline iron oxides in the soil and on root Fe-plaque, (ii) an increase in As resistant and arsenite-oxidizing bacteria that likely contribute to the natural attenuation of As in soil, and (iii) an increase in the pore-water silicon concentration that competitively inhibited As uptake by plants. Adding silicate fertilizer improved the general soil fertility by increasing the abundance of microbial functional communities involved in nutrient (carbon, nitrogen, and phosphorus) cycling, nitrogen and carbon fixation, methane consumption, and heavy metals/metalloid detoxification, while decreasing the number of microorganisms involved in methane and nitrous oxide production. We conclude that silicate fertilizer amendments stimulate soil microbial functions that are beneficial for rice growth while controlling As bioavailability, and thus are a potential solution to allow rice production in As-contaminated paddy soils. [Display omitted] • Silicate fertilizer increased As(III)-oxidizing and As-resistant gene abundance. • Silicate fertilizer increased labile C degrading gene, but not recalcitrant C degrading gene abundance. • Silicate fertilizer increased C- and N-fixing gene abundance. • Silicate fertilizer decreased CH 4 producing gene, but increased CH 4 consuming gene abundance. • Silicate fertilizer decreased As levels in grain, straw and husk, and increased yield. [ABSTRACT FROM AUTHOR]