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Furfural (Furan-2-carbaldehyde) is a potentially toxic substance. Indigenous bacterial strains naturally adapted to that contaminant were previously isolated from the effluent of a tannin industry and identified as Microbacterium sp., Bacillus licheniformis and Brevundimonas sp. The aim of this work was to determine the maximum concentration of furfural that can be degraded by bacterial consortium metabolism. The colonies were activated in peptone solution and then in a mineral medium with glucose as co-substrate, adding the bacterial consortium and different concentrations of furfural. They were incubated in a shaker during 72 hours at 30 ºC and 200 rpm. Bacterial growth was monitored by measuring absorbance at 610 nm. The concentration of furfural was analyzed by High Performance Liquid Chromatography. The consortium was able to grow in furfural concentration of up to 4516 mg L-1. Up to 2723 mg L-1 can be degraded in 24 hours. According to these results, a considerable furfural consumption increase is possible with a consortium.

Two new α-pyrones, micropyrones A (1) and B (2), along with four known γ-pyrones, nocapyrone D (3), nocapyrone A (4), marinactinone A (5), and nocapyrone H (6), were isolated from the culture extract of actinomycete Microbacterium sp. GJ312, which was isolated from Glycyrrhiza uralensis. The structures of these compounds were identified by analysis of spectral data. They are the first α- and γ-pyrones reported from the genus Microbacterium. The antibacterial activity of all compounds against Staphylococcus aureus and methicillin resistant S. aureus was evaluated. However, none of them showed significant activity. This study represents the first phytochemical example of a Glycyrrhiza-derived actinomycete.

BackgroundWith over 350,000 estimated deaths worldwide in 2018, prostate cancer (PCa) continues to be a major health concern and a significant cause of cancer-associated mortality among men. While cancer in general is considered a disease of the human genome, there is a growing body of evidence suggesting that changes to the healthy microbiota could play a vital role in cancer development, progression, and/or treatment outcome.MethodsUsing a metatranscriptomic approach, we annotated the microbial reads obtained from total RNA sequencing of 106 prostate tissue samples from 94 PCa patients (discovery cohort). We investigated microbial dysbiosis associated with PCa by systematically comparing the microbiomes between benign and malignant tissue samples, between less vs. more-aggressive PCa, and between patients who had biochemical recurrence as opposed to those who did not. We further performed differential gene expression and cell type enrichment analysis to explore the host transcriptomic and cellular responses to selected microbial genera. A public dataset (GSE115414) of total RNA sequencing reads from 24 prostate tissue samples (8 benign and 16 malignant) served as the validation cohort.ResultsWe observed decreased species diversity and significant under-representation ofStaphylococcus saprophyticusandVibrio parahaemolyticus, as well as significant over-abundance ofShewanellain malignant as compared to benign prostate tissue samples in both the discovery (p< 0.01) and validation (p< 0.05) cohorts. In addition, we identifiedMicrobacteriumspecies (p< 0.01) to be significantly over-abundant in pathologically advanced T3 tumors compared to T2 in the discovery cohort. Malignant samples having high vs. lowShewanellacounts were associated with downregulated Toll-like receptor signaling pathways and decreased enrichment of dendritic cells. Malignant samples having low vs. highV. parahaemolyticuscounts were enriched for olfactory transduction and drug metabolism pathways. Finally, malignant samples were enriched for M1 and M2 macrophages as compared to benign tissue samples.ConclusionsThe results from this exploratory study support the existence of an important biological link between the prostate microbiota and PCa development/progression. Our results highlightShewanella,V. parahaemolyticus, andMicrobacterium sp.as interesting candidates for further investigation of their association with PCa.

Synechococcus cultures in the laboratory are often associated with heterotrophic bacteria. Here, we report the genome sequence of the bacterium Microbacterium sp. strain R1, isolated from a culture of the estuarine Synechococcus strain CBW1107. Several secondary metabolites and transporter-related genes were identified in the genome of Microbacterium sp. strain R1.

Background A new prototype of bio-conditioner useful in rehabilitation of degraded soils was performed. In order to obtain this aim two stages were established: production of biomass of Microbacterium sp. CSB3 and formulation of this inoculum in a sediment supplemented with low-rank coal (LRC). Materials and methods The effect of agitation and pH on microbial growth was determined. As response variables, the final production of biomass (Xf) and yield (Yx/s) were determined. Growth dynamics of CSB3 in a 2-L reactor was also evaluated through Xf, Yx/s and the determination of kinetic parameters (specific growth rate [μ] and duplication time [Dt]). The formulation of CSB3 was evaluated; mixtures of several LRC proportions with a sediment from a municipal aqueduct were made. During 90 days, the viability of CSB3 was monitored by counting CFU. Results The optimal pH and agitation for Xf and Yx/x were 7.5 and 232 rpm, respectively; the values of Xf, Yx/s, μ and Dt in 2-L reactor were: 1.5 gL−1, 0.28 g/g, 0.0208 h−1, 33.3 h, respectively. Regarding the formulation, the most suitable combination to conserve the viability of CSB3 was LRC 25%–sediment 75%; the heavy metals content of LRC allow to infer that the prototype of bio-conditioner does not represent a pollution risk for environment soil. Conclusions It was possible to optimize the growth of CSB3 under laboratory conditions. The viability of CSB3 could be maintained by a formulation in a sediment supplemented with lignite; this formulation constitutes a new prototype of soil bio-conditioner.

Reduksi Cr(VI) pada Tanah Menggunakan Microbacterium sp. Strain SpR3 dengan Bahan Pembawa Vermikompos Kromium hexavalen [Cr(VI)] adalah polutan yang berasal dari kegiatan industri. Microbacterium sp. strain SpR3 dapat digunakan sebagai agen bioremediasi Cr(VI). Kemampuan agen biologi untuk mereduksi Cr(VI) umumnya meningkat bila diinokulasi dalam media pembawa. Tujuan penelitian ini adalah untuk menganalisis kemampuan Microbacterium sp. strain SpR3 dalam mengurangi Cr(VI) serta membandingkannya dengan kondisi ketika diinokulasi dalam media pembawa vermikompos. Pengamatan dilakukan selama tujuh hari pada tiga perlakuan yang berbeda, yakni Microbacterium sp. strain SpR3 dengan dan tanpa media pembawa vermikompos yang diinokulasi pada tanah steril yang mengandung 50 ppm Cr(VI), dan tanah steril tanpa inokulasi bakteri yang mengandung 50 ppm Cr(VI). Variabel yang diamati adalah jumlah bakteri, konsentrasi, dan kecepatan reduksi Cr(VI) oleh bakteri tersebut di dalam tanah pada T0 (hari ke-0) dan T7 (hari ke-7). Hasil penelitian ini menyimpulkan bahwa vermikompos bisa digunakan sebagai media pembawa Microbacterium sp. strain SpR3 karena dapat meningkatkan jumlah bakteri sampai 2 × 1010 CFU g-1 di dalam tanah dan dapat mengurangi Cr(VI) dengan kecepatan 0,095 mg L-1 jam-1. Hexavalent chromium [Cr(VI)] is a pollutant originated from industrial activities. Microbacterium sp. strain SpR3 can be used as Cr(VI) bioremediation agent. The ability of bioagent to reduce Cr(VI) usually improves when inoculated in a carrier. This research aimed to assess the ability of Microbacterium sp. strain SpR3 to reduce Cr(VI) in soil and compare its ability when inoculated in vermicompost carrier. Observations were carried out for seven days on three different treatments, namely Microbacterium sp. strain SpR3 with and without vermicompost inoculated in sterile soils containing 50 ppm Cr(VI), and sterile soils containing 50 ppm Cr(VI) without bacterial inoculation. The observed variables were the number of bacteria, the concentration of Cr(VI) and the rate of Cr(VI) reduction by these bacteria in the soil at T0 (day 0) and T7 (day 7). It was concluded that vermicompost could be used as a carrier of Microbacterium sp. strain SpR3 as it could increase the number of the bacteria to 2 × 1010 CFU g-1 in soil and could reduce Cr(VI) at the rate of 0.095 mg L-1 h-1.

Microbacterium sp. strain Nx66 was isolated from waters contaminated by petrochemical effluents collected in Algeria. Its genome was sequenced using Illumina MiSeq (2 × 150-bp read pairs) and Oxford Nanopore (long reads) technologies and was assembled using Unicycler. It is composed of one chromosome of 3.42 Mb and one plasmid of 34.22 kb.

Boreal peatlands with low iron availability are a potential, but rarely studied, source for the isolation of bacteria for applications in metal sorption. The present research focused on the isolation and identification of Actinobacteria from northern Finland, which can produce siderophores for metal capture. The 16S rDNA analysis showed that isolated strains belonged to Firmicutes (Bacillus sp.) and Actinobacteria (Microbacterium sp.). The culture most efficiently producing siderophores in the widest array of the media was identified as Microbacterium sp. The most appropriate media for siderophore production by the Microbacterium strain were those prepared with glucose supplemented with asparagine or glutamic acid, and those prepared with glycerol or fructose supplemented with glutamic acid. The microorganism obtained and its siderophores were used to develop Sphagnum moss-based hybrid biosorbents. It was showed that the hybrid sorbent could bind nickel ions and that the nickel removal was enhanced by the presence of siderophores. Bacterial cells did not have a significant effect on sorption efficiency compared to the use of siderophores alone. The microbial biosorbent could be applied in the final effluent treatment stage for wastewater with low metal concentrations.

Mannanases are ubiquitous enzymes and are being explored for diverse industrial applications. In this study, a novel bacterial strain Microbacterium sp. CIAB417 was identified and characterized for extracellular production of mannanase. Microbacterium sp. CIAB417 was found to produce maximum mannanase after 36 h of incubation at 37 °C. Mannanase produced by the isolate was observed for maximum activity at optimum pH of 6 and optimum temperature of 50 °C. Crude mannanase was found to be capable of producing mannooligosachharides (MOS) by hydrolyzing hemicellulose from locust bean gum and Aloe vera. The produced MOS was characterized and found to be mixture of mannobiose to mannohexose units. Mannanase was also explored for decolorization of dyes. Bromophenol blue and coomassie blue R-250 were observed to be decolorized to the extent of 45.40 and 42.75%, respectively. Hence, the identified bacterial strain producing mannanase could be of great significance for applications in food and textile industry.

One of the relevant areas in microbiology and biotechnology is the study of microorganisms that induce the destruction of different materials, buildings, and machines and lead to negative effects. At the same time, the positive ecological effects of degradation can be explained by the detoxication of industrial and agricultural wastes, chemical substances, petroleum products, xenobiotics, pesticides, and other chemical pollutants. Many of these industrial wastes include hard-to-degrade components, such as lignocellulose or plastics. The biosynthesis of natural products based on the transformation of lignocellulosic wastes is of particular interest. One of the world’s unique ecosystems is presented by Lake Baikal. This ecosystem is characterized by the highest level of biodiversity, low temperatures, and a high purity of the water. Here, we studied the ability of several psychrophilic representatives of Baikal Actinobacteria to grow on sawdust wastes and transform them into bioactive natural products. Different strains of both widely spread genus of Actinobacteria and rare genera of Actinobacteria were tested. We used the LC-MS methods to show that Actinobacteria living in sawmill wastes can produce both known and novel natural products with antibiotic activity. We demonstrated that the type of sawmill wastes and their concentration influence the Actinobacteria biosynthetic potential. We have shown for the first time that the use of Baikal psychrophilic microorganisms as a factory for biodegradation is applicable for the transformation of lignocellulosic wastes. Thus, the development of techniques for screening novel natural products leads to an elaboration on the active ingredients for novel drugs.

The purpose of this research is to design a new bioremediation-electrokinetic (Bio-EK) remediation process to increase treatment efficiency of chromium contamination in soil. Upon residual chromium analysis, it is shown that traditional electrokinetic-PRB system (control) does not have high efficiency (80.26%) to remove Cr(VI). Bio-electrokinetics of exogenous add with reduction bacteria Microbacterium sp. Y2 and electrokinetics can enhance treatment efficiency Cr(VI) to 90.67% after 8 days' remediation. To optimize the overall performance, integrated bio-electrokinetics were designed by synergy with 200 g humic substances (HS) into the systems. According to our results, Cr(VI) (98.33%) was effectively removed via electrokinetics. Moreover, bacteria and humic substances are natural, sustainable, and economical enhancement agents. The research results indicated that the use of integrated bio-electrokinetics is an effective method to remediate chromium-contaminated soils.

Se diseñó un medio de cultivo para la multiplicación de una cepa bacteriana solubilizadora de carbón (BSC3); como sustratos se utilizaron tres residuos agroindustriales: melaza de caña, lactosuero y cabecilla de arroz. Mediante diseños de superficie de respuesta Box-Behnken se evaluaron dos rangos de concentraciones para cada sustrato (2–10% y 0–6%), de esta forma se obtuvo la combinación adecuada para la producción de biomasa de BSC3. Se construyeron curvas de crecimiento bacteriano para determinar algunos parámetros cinéticos (velocidad específica de crecimiento [µ], tiempo de duplicación [Td] y producción final de biomasa), que fueron comparados con el crecimiento de la cepa en un medio de cultivo control, también se caracterizó elementalmente (CHN) el medio optimizado. Las concentraciones óptimas para la obtención de biomasa de BSC3 fueron: 6% melaza, 2,5% lactosuero más un contenido mínimo de sales, con un pH de 6,5. Los parámetros cinéticos en este medio fueron: biomasa final=3,2 g.L-1, µ=0,0206 h-1, Td=33,64 h, y en el medio control: biomasa final=3,4 g.L-1, µ=0,0139 h-1, Td=49,85 h, lo cual muestra que el medio permitió un incremento en la velocidad de crecimiento y un menor tiempo de duplicación de BSC3, de esta forma el medio optimizado permitió la multiplicación de BSC3 y le permitió conservar su actividad solubilizadora de carbón. A culture medium for the multiplication of a coal solubilizing bacterial strain was designed (BSC3); were used three agroindustrial wastes: cane molasses, whey and crushed rice. Through Box-Behnken surfaces responses designs, two concentration ranks (2–10% y 0–6%) were evaluated, so the adequate combination to BSC3 biomass production was found. Bacterial growth curves were constructed to determine some kinetics parameters (growth specific rate [µ], duplication time [Dt] and biomass final production), that were compared with the strain growth in a control culture medium; the optimized culture medium was also elementally caracterizated. The optimal concentrations to BSC3 biomass obtaining were: 6% molasses cane, 2,5% whey plus a salts minimum medium, with pH of 6,5. The kinetics parameters in this medium were: final biomass = 3,2 g.L-1, µ=0,0206 h-1, Dt=33,64 h, and in the control medium: final biomass = 3,4 g.L-1, µ=0,0139 h-1, Dt=49,85 h, this shows that the optimized medium allows the increase of the specific growth rate and a less duplication time of BSC3, so the optimized medium allowed to conserve its coal solubilizing activity.

The deterioration of sludge settleability is a common problem in sludge reduction systems with metabolic uncouplers (MUs). The deterioration mechanisms were studied by conducting laboratory-based tests for 85 days. The sludge volume index (SVI30) increased from 88.0 mL/g SS to 149.5–158.9 mL/g SS with MUs. The addition of MUs decreased the N-acyl-L-homoserine lactone (AHLs) content of the sludge by increasing the AHL-degrading bacteria (Paenibacillus spp., Bacillus spp. and Microbacterium sp.) and decreasing or eliminating the AHL-producing bacteria (Paracoccus sp.). Meanwhile, the addition of MUs increased the extracellular polymeric substances (EPS) of sludge and decreased its protein-polysaccharide ratio (PN/PS). The decrease of AHL content and the changes of EPS resulted in the deterioration of sludge settleability in the MUs systems. The statistical analysis suggested the decrease of AHL content was more important than the change of sludge EPS on deteriorate the sludge settleability.

Lignin is one of the major constituents in lignocellulosic biomass and is the mostabundant source of renewable aromatics on terrestrial ecosystems. The workcarried out in this thesis concerns bacterial conversion of low molecular weightlignin. This thesis is divided into three major sections, with an initial emphasison screening and characterization of selected bacterial species on lignin modelcompounds, followed by testing their performance on treated lignin substrates,and finally progressing towards strain improvement via metabolic engineering. During screening for bacteria using samples from natural and man-madeenvironments, Pseudomonas species were found dominant. Some of theseisolates, and the well-known aromatic degrader – Pseudomonas putida KT2440– were cultivated on lignin model compounds. P. putida and Pseudomonas sp.isolate 9.1 attained specific growth rates of about 0.21-0.27 h-1 and 0.12-0.30 h-1 respectively, on several compounds from the coniferyl, p-coumaryl and benzoyl branches of the funnelling pathways. Meanwhile, a contaminant was found growing on syringate plates, and was later identified to be a bacterium belonging to the Microbacterium genus. This Gram-positive bacterium, named RG1, was able to consume syringate and syringaldehyde besides other aromatic compounds from the coniferyl and p-coumaryl branches. Due to its interesting abilities to assimilate syringyl compounds, the genome of this strain was sequenced to identify genes involved in a putative syringyl pathway.To assess the performance of selected bacteria on lignin substrates, cultivationswere performed using alkaline- and oxidatively-treated Kraft lignin. P. putida and P. fluorescens consumed 4-HBA, vanillin, and vanillate in the complex ligninmixture that likely contained various toxic products. In addition, Rhodococcusopacus and Sphingobium sp. SYK-6 assimilated guaiacol and acetovanillonerespectively, from the lignin mixture. Interestingly, P. fluorescens was able tobreak down the higher molecular weight lignin and produce several smallermolecules.P. putida was selected as a host organism for genetic engineering aimed atexpanding the range of substrates utilized. Heterologous expression of thecytochrome P450 and oxidoreductase genes from R. rhodochrous enabled P.putida to assimilate guaiacol – one of the major depolymerization products fromsoftwood lignin – as the sole carbon source. Furthermore, the identification anddeletion of an aldehyde reductase in a P. putida strain that converts ferulate tovanillin, increased the yield of vanillin by eliminating the formation of vanillylalcohol as by-product.

Here, we report the draft genome sequence of Microbacterium sp. strain Gd 4-13, isolated from late Pleistocene permafrost of marine origin located on the Gydanskiy Peninsula. Genome sequence analysis was performed to understand strain survivability mechanisms under permafrost conditions and to expand biotechnology applications.

Microbacterium sp. strain SGAir0570 was isolated from air samples collected in Singapore. Its genome was assembled using single-molecule real-time sequencing and MiSeq short reads. It has one chromosome with a length of 3.38 Mb and one 59.2-kb plasmid. It contains 3,170 protein-coding genes, 48 tRNAs, and 6 rRNAs.

AIMS: To evaluate hexavalent chromium (Cr (VI)) reduction potential of indigenous isolate M5, under growing and nongrowing conditions. METHODS AND RESULTS: Microbacterium sp. M5 was isolated from soil samples collected from a common effluent treatment plant, after enrichment of indigenous microbial diversity in the presence of 200 mg l⁻¹ of Cr (VI). The isolate achieved complete reduction of 400 mg l⁻¹ Cr (VI) supplement to Luria Bertani medium having initial pH of 9·0 after 48 h incubation. Furthermore, the reduction potential of resting and surfactant treated cell membrane compromised cells of M5 was evaluated. The control and biosurfactant treated cells achieved 22·71 ± 0·5% and 40·56 ± 0·5% reduction of 50 mg l⁻¹ Cr (VI) in Tris‐HCl buffer, under resting cells conditions. To the best of our knowledge, this is the first report where cells with compromised cell membrane obtained after exposure to biosurfactant have been evaluated for Cr (VI) reduction. CONCLUSION: The Cr (VI) reduction potential of Microbacterium sp. M5 could be effectively exploited for treatment of chromium‐rich effluents, under nongrowing conditions. SIGNIFICANCE AND IMPACT OF THE STUDY: The isolate M5 could be a potential inoculum for effluent treatment plants as it is able to support Cr (VI) reduction under wide range of pH, salinity and in the presence of different metal ions.

Here, we report the complete genome sequence of Microbacterium sp. strain 10M-3C3, which was isolated from Lake Matano, Indonesia. The genome is 3,387,846 bp long, encodes 3,351 predicted proteins, and has a G+C content of 71.6%.

The biotransformation of hexavalent chromium [Cr(VI)] via Cr(VI)-reducing microorganisms is considered an ecofriendly approach to detoxify Cr(VI). A new Cr(VI)-reducing bacterium named Microbacterium sp. QH-2 was isolated in this study. Scanning electron microscopy (SEM) images showed protrusions on the bacterial surface of strain QH-2 after an 18 h incubation in media under 10 mM Cr(VI) treatment. Results of the experiments on the capacity of reducing Cr(VI) indicated that strain QH-2 could reduce 100% Cr(VI) less than 48-96 h. When media with 4 mM Cr(VI) were incubated, the fastest reduction rate of strain QH-2 could come up to 2.17 mg/L Cr(VI) h−1. Furthermore, strain QH-2 could reduce Cr(VI) over the pH between 7 and 10. The optimum pH to reduce Cr(VI) by strain QH-2 was 9. Strain QH-2 also exhibited a relatively high tolerance even to 20 mM Cr(VI). These results declared that strain QH-2 had the potential to detoxify Cr(VI) in the Cr(VI)-contaminated soil or effluent.

RESUMEN Se diseñó un medio de cultivo para la multiplicación de una cepa bacteriana solubilizadora de carbón (BSC3). Como sustratos se utilizaron tres residuos agroindustriales: melaza de caña, lactosuero y cabecilla de arroz. Mediante diseños de superficie de respuesta Box-Behnken se evaluaron dos rangos de concentraciones para cada sustrato (2-10% y 0-6%). De esta forma se obtuvo la combinación adecuada para la producción de biomasa de BSC3. Se construyeron curvas de crecimiento bacteriano para determinar algunos parámetros cinéticos (velocidad específica de crecimiento [u], tiempo de duplicación [Td] y producción final de biomasa), que fueron comparados con el crecimiento de la cepa en un medio de cultivo control, también se caracterizó elementalmente (CHN) el medio optimizado. Las concentraciones óptimas para la obtención de biomasa de BSC3 fueron: 6% melaza, 2,5% lactosuero más un contenido mínimo de sales, con un pH de 6,5. Los parámetros cinéticos en este medio fueron: biomasa final=3,2 g.L-1, u=0,0206 h-1, Td=33,64 h, y en el medio control: biomasa final=3,4 g.L-1, u=0,0139 h-1, Td=49,85 h, lo cual muestra que el medio permitió un incremento en la velocidad de crecimiento y un menor tiempo de duplicación de BSC3, de esta forma el medio optimizado permitió la multiplicación de BSC3 y le permitió conservar su actividad solubilizadora de carbón. ABSTRACT A culture medium for the multiplication of a coal solubilizing bacterial strain was designed (BSC3); were used three agroindustrial wastes: cane molasses, whey and crushed rice. Through Box-Behnken surfaces responses designs, two concentration ranks (2-10% y 0-6%) were evaluated, so the adequate combination to BSC3 biomass production was found. Bacterial growth curves were constructed to determine some kinetics parameters (growth specific rate [u], duplication time [Dt] and biomass final production), that were compared with the strain growth in a control culture medium; the optimized culture medium was also elementally caracterizated. The optimal concentrations to BSC3 biomass obtaining were: 6% molasses cane, 2,5% whey plus a salts minimum medium, with pH of 6,5. The kinetics parameters in this medium were: final biomass = 3,2 g.L-1, u=0,0206 h-1, Dt=33,64 h, and in the control medium: final biomass = 3,4 g.L-1, u=0,0139 h-1, Dt=49,85 h, this shows that the optimized medium allows the increase of the specific growth rate and a less duplication time of BSC3, so the optimized medium allowed to conserve its coal solubilizing activity.

The bacterium Microbacterium sp. GT35 was found to be capable of transforming Re and Rg1, principal ginsenosides of the 20(S)-protopanaxatriol series, into minor glycosides 20(S)-Rg2 and 20(S)-Rh1, respectively. The specificity of Microbacterium sp. GT35 differed from that of several other microorganisms by cleaving only the β-D-glucose on C-20 and not affecting the C-6 carbohydrates of 20(S)-protopanaxatriol.

Microbacterium sp. strain SZ1 isolated from gold ores of a Malaysia gold mine was found to be highly resistant to arsenic. Here, we report the draft genome sequence of SZ1, which may provide further insights into understanding its arsenic resistance mechanism. In this draft genome, a complete set of ars operons and two additional scattered ars genes were encoded.

We report here the 3,637,012-bp draft genome sequence of Microbacterium sp. strain LEMMJ01, isolated from ornithogenic soil from King George Island, Antarctica. The total number of genes presented in the draft genome sequence was 3,553, and the total number of coding sequences was 3,497. In addition, genes related to the production of terpene and carotenoids were revealed.

A novel indole, microindolinone A (1), was isolated from a deep-sea-derived actinomycete Microbacterium sp. MCCC 1A11207, together with 18 known compounds (2–19). By detailed analysis of the 1H, 13C, HSQC, COSY, HMBC, high resolution electron spray ionization mass spectrum (HRESIMS), and circular dichroism (CD) data, the absolute configuration of 1 was elucidated as 5R-hydroxy-4,5,6,7-tetrahydroindole-4-one. It is noteworthy that 1 is the second example of a saturated indole isolated from nature.

We report here the genome sequence of Microbacterium sp. strain TPU 3598, previously described as a producer of lumichrome. The sequenced genome size is 3,787,270 bp, the average G+C content is 68.39%, and 3,674 protein-coding sequences are predicted.

Microbacterium sp. strain TNHR37B was isolated from a geothermal bore well sample (50°C) collected from a region of coal seam gas extraction activities. The 3.5-Mb genome with a G+C content of 69.9% contained unique genes, and a low similarity value for average nucleotide identity using BLAST was observed with the available 73 Microbacterium sp. genomes.

The generation of biogenic manganese oxides (BMnOx) by Microbacterium sp. CSA40, and As(III) removal efficiency and mechanism by BMnOx were investigated in this study. The propagation and growth of Microbacterium sp. CSA40 was conducted in half-strength Luria Broth with 10 mg/L Mn(II), then high concentration of Microbacterium sp. CSA40 was added to PYG medium making its OD600 = 0.9 ± 0.05 for BMnOx generation. The initial Mn(II) concentrations, excessively oligotrophic condition, and pH had great influence on generation of BMnOx by Microbacterium sp. CSA40. An appropriate Mn(II) concentration (50 mg/L) was obtained for generation of BMnOx, and higher or lower Mn(II) concentration would interfere Mn(II) oxidization performance. Mn(II) oxidation ability performed best in weak alkaline conditions and would be restricted in an excessively oligotrophic condition. As(III) oxidization and As(V) adsorption proceed simultaneously by BMnOx, what is more, more than 90% of total As was removed by 0.5 g/L BMnOx. During the application process, no Mn(II) was released in the solution, that is, BMnOx retained its ability for Mn(II) oxidization caused by activity of Microbacterium sp. CSA40. Therefore, BMnOx would be a pollution-free, cost-effective, and high-efficiency material for As(III) treatment in groundwater.

This study provides a preliminary investigation of the synergistic and antagonistic effects of different microbial strains and their influence on electricity generation and wastewater treatment performances in microbial fuel cells (MFCs). Microbial metabolic characteristics of petroleum hydrocarbon pollutants are studied simultaneously to provide further insight into how microbial synergistic and antagonistic effects influence MFCs. We observed a synergistic effect between Paenibacillus sp. and Deinococcus sp. and an antagonistic effect between Microbacterium sp. and Paenibacillus sp. and Deinococcus sp . The microbial synergistic and antagonistic effects significantly influenced MFC performance directly. The best MFC performance was observed with Paenibacillus sp. + Deinococcus sp. due to their synergistic effect, where the power density output reached 102.93 mW m −3 , and the oil removal rate was 85.56 ± 1.10%. However, the performances of MFCs inoculated with Microbacterium sp. were considerably poorer because of its antagonistic effect on the other microbial strains, where the lowest power density output was 24.93 mW m −3 , and the oil removal rate was 65.88 ± 1.10%. The degradation characteristics of petroleum hydrocarbons differ between microbial strains; thus, the relative results can provide further insight into how microbial synergistic and antagonistic effects influence MFCs.

A previously reported bacterial bioemulsifier, here termed microbactan, was further analyzed to characterize its lipid component, molecular weight, ionic character and toxicity, along with its bioemulsifying potential for hydrophobic substrates at a range of temperatures, salinities and pH values. Analyses showed that microbactan is a high molecular weight (700 kDa), non-ionic molecule. Gas chromatography of the lipid fraction revealed the presence of palmitic, stearic, and oleic acids; thus microbactan may be considered a glycolipoprotein. Microbactan emulsified aromatic hydrocarbons and oils to various extents; the highest emulsification index was recorded against motor oil (96%). The stability of the microbactan-motor oil emulsion model reached its highest level (94%) at 50 degrees C, pH 10 and 3.5% NaCl content. It was not toxic to Artemia salina nauplii. Microbactan is, therefore, a non-toxic and non-ionic bioemulsifier of high molecular weight with affinity for a range of oily substrates. Comparative phylogenetic assessment of the 16S rDNA gene of Microbacterium sp. MC3B-10 with genes derived from other marine Microbacterium species suggested that this genus is well represented in coastal zones. The chemical nature and stability of the bioemulsifier suggest its potential application in bioremediation of marine environments and in cosmetics.

A microcystin-degrading bacterium was isolated from Daechung reservoir, Korea. The isolated bacterium was identified as Microbacterium sp. by 16S rRNA gene sequence analysis, and designated as Microbacterium sp. MA21. This strain degraded cyanobacterial hepatotoxin, microcystin-LR, over 80% when incubated at 30�C for 12 hr in R2A medium. Two unknown metabolites of microcystin were also identified during the degradation process. Although only Sphinogomonas and Actinobacteria have been known to degrade microcystin previously, this is the first report that Microbacterium sp. MA21 could degrade microcystin.

Here, we describe the draft genome sequence of Microbacterium sp. strain Alg239_V18, an actinobacterium retrieved from the marine sponge Spongia sp. Genome annotation revealed a vast gene repertoire involved in antibiotic and heavy metal-resistance, and a versatile carbohydrate assimilation metabolism with potential for chitin utilization.

A novel strain, Microbacterium sp., which can be used as a catalyst in the asymmetric reduction of simple aromatic ketones to produce chiral aromatic alcohols, was isolated from soil by microbial screening. Using acetophenone as a model substrate for asymmetric reduction, 82 % reaction yield with more than 99 % enantiomeric excess of (R)-1-phenylethanol were achieved under the optimal conditions. Furthermore, the key reductase responsible for the asymmetric reduction was purified from the newly isolated Microbacterium sp. through (NH4)2SO4 fractional precipitation, anion exchange chromatography and gel filtration chromatography. The purified reductase is a NADH-dependent aromatic ketone reductase. Gel filtration chromatography and SDS-PAGE results reveal that it is a homodimer with two 28-kDa subunits. The enzymatic properties of the reductase indicate that it is a highly efficient catalyst for the asymmetric reduction of simple aromatic ketone.

We report the draft genome sequence of Microbacterium sp. strain HM58-2, which produces hydrazidase, an enzyme hydrolyzing acylhydrazides. The estimated genome size is 3.9 Mb. Genome sequence information of this strain will help to identify an assimilating mechanism of nonnatural compounds in this strain and to develop ecological applications.

Microbacterium sp. strain PAMC28756, of the family Microbacteriaceae, was isolated from Stereocaulon sp., an Antarctic lichen. Complete genome sequencing of Microbacterium sp. PAMC28756 revealed, for the first time in the genus Microbacterium, a series of key genes involved in C50 carotenoid biosynthesis. An analysis of the Microbacterium sp. PAMC28756 genome will lead to a better understanding of the carotenoid biosynthesis pathway. Furthermore, the sequence data will provide novel insight into UV radiation resistance in extremely cold environments.

In the present study, 50 strains of yellow-pigmented gram-positive rods that had been isolated from human clinical specimens and collected over a 5-year period were further characterized by phenotypic and molecular genetic methods. All 50 strains belonged to the genus Microbacterium , and together they represented 18 different species. Microbacterium oxydans ( n = 11), M. paraoxydans ( n = 9), and M. foliorum ( n = 7) represented more than half of the strains included in the present study. The isolation of strains belonging to M. hydrocarbonoxydans ( n = 2), M. esteraromaticum ( n = 1), M. oleivorans ( n = 1), M. phyllosphaerae ( n = 1), and M. thalassium ( n = 1) from humans is reported for the first time. Microbacterium sp. strain VKM Ac-1389 ( n = 1) and the previously uncultured Microbacterium sp. clone YJQ-29 ( n = 1) probably represent new species. Comprehensive antimicrobial susceptibility data are given for the 50 Microbacterium isolates. This study is, so far, the largest on Microbacterium spp. encountered in human clinical specimens and outlines the heterogeneity of clinical Microbacterium strains.

A variety of bacteria associate with the hydrocarbon-producing microalga Botryococcus braunii , some of which may influence its growth. We report here the genome sequences for Achromobacter piechaudii GCS2, Agrobacterium sp. strain SUL3, Microbacterium sp. strain GCS4, and Shinella sp. strains GWS1 and SUS2, isolated from a laboratory culture of B. braunii , race B, strain Guadeloupe.

Aims: This study was performed to determine the potential of tropical intertidal biofilm bacteria as a source of novel exopolymers (EPS). Methods and Results: A screening procedure was implemented to detect EPS-producing biofilm bacteria. Isolates MC3B-10 and MC6B-22, identified respectively as a Microbacterium species and Bacillus species by 16S rDNA and cellular fatty acids analyses, produced different EPS, as evidenced by colorimetric and gas chromatographic analyses. The polymer produced by isolate MC3B-10 displays significant surfactant activity, and may chelate calcium as evidenced by spectroscopic analysis. Conclusions: Polymer MC3B-10 appears to be a glycoprotein, while EPS MC6B-22 seems to be a true polysaccharide dominated by neutral sugars but with significant concentrations of uronic acids and hexosamines. EPS MC3B-10 possesses a higher surfactant activity than that of commercial surfactants, and given its anionic nature, may chelate cations thus proving useful in bioremediation. The chemical composition of polymer MC6B-22 suggests its potential biomedical application in tissue regeneration. Significance and Impact of the Study: This is the first report of a Microbacterium species producing EPS with surfactant properties, which expands our knowledge of the micro-organisms capable of producing these biomolecules. Furthermore, this work shows that tropical intertidal environments are a nonpreviously recognized habitat for bioprospecting EPS-producing bacteria, and that these molecules might be involved in ecological roles protecting the cells against dessication.

The genome sequence for Microbacterium sp. strain 3J1, a desiccation-tolerant organism isolated from the Nerium oleander rhizosphere, is reported here. The genome is estimated to be approximately 3.5 Mb in size, with an average G+C content of 67.7% and a predicted number of protein-coding sequences of 3,310.

The genus Microbacterium contains bacteria that are ubiquitously distributed in various environments and includes plant-associated bacteria that are able to colonize tissue of agricultural crop plants. Here, we report the 3,508,491bp complete genome sequence of Microbacterium sp. strain BH-3-3-3, isolated from conventionally grown lettuce (Lactuca sativa) from a field in Vestfold, Norway. The nucleotide sequence of this genome was deposited into NCBI GenBank under the accession CP017674.

In this paper, the production of humic substances (HS) through the bacterial solubilization of low rank coal (LRC) was evaluated. The evaluation was carried out by 19 bacterial strains isolated in microenvironments with high contents of coal wastes. The biotransformed LRC and the HS produced were quantified in vitro in a liquid growth medium. The humic acids (HA) obtained from the most active bacterial strain were characterized via elemental composition (C, H, N, O), IR analyses, and the E4/E6 ratio; they were then compared with the HA extracted chemically using NaOH. There was LRC biotransformation ranged from 25 to 37%, and HS production ranged from 127 to 3100 mg . L(-1). More activity was detected in the isolated strains of Bacillus mycoides, Microbacterium sp, Acinetobacter sp, and Enterobacter aerogenes. The HA produced by B. mycoides had an IR spectrum and an E4/E6 ratio similar to those of the HA extracted with NAOH, but their elemental composition and their degree of aromatic condensation was different. Results suggest that these bacteria can be used to exploit the LRC resulting from coal mining activities and thus produce HS in order to improve the content of humified organic matter in soils.

In an etiological study to identify the causal agent of red stripe of rice, white bacterial colonies were consistently isolated from all diseased leaf samples collected in Indonesia. All the bacterial isolates were pathogenic to rice and caused symptoms similar to red stripe. The bacterial infection in rice leaves was confirmed histologically. Bacterial masses were observed in the lumina of xylem vessels in the lesion area, especially in those of connecting strands. Analysis of the 16S rDNA of the causal bacterium gave best matches to the 16S rDNA sequence of Microbacterium spp. of Microbacteriaceae which includes Clavibacter.