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1. Constructing polymorphonuclear cells: chromatin folding shapes nuclear morphology.

2. An extrinsic motor directs chromatin loop formation by cohesin.

3. Permeable TAD boundaries and their impact on genome‐associated functions.

4. Motor domain of condensin and step formation in extruding loop of DNA.

5. Activity-driven chromatin organization during interphase: Compaction, segregation, and entanglement suppression.

6. Cohesin Complex: Structure and Principles of Interaction with DNA.

7. Cohesin-Dependent Loop Extrusion: Molecular Mechanics and Role in Cell Physiology.

8. Organization and Role of Bacterial SMC, MukBEF, MksBEF, Wadjet, and RecN Complexes.

9. LoopSage: An energy-based Monte Carlo approach for the loop extrusion modeling of chromatin.

10. Through the lens of phase separation: intrinsically unstructured protein and chromatin looping.

11. Multi-scale phase separation by explosive percolation with single-chromatin loop resolution

12. Spatial Organization of Chromatin: Emergence of Chromatin Structure During Development

13. NIPBL and cohesin: new take on a classic tale.

14. Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation

15. Theory of chromatin organization maintained by active loop extrusion.

16. Transcription-Driven Translocation of Cohesive and Non-Cohesive Cohesin In Vivo.

17. Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding

18. MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions

19. Full circle: a brief history of cohesin and the regulation of gene expression.

20. Function and Evolution of the Loop Extrusion Machinery in Animals.

21. Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF

22. Determining cellular CTCF and cohesin abundances to constrain 3D genome models.

23. Recent evidence that TADs and chromatin loops are dynamic structures

24. Regulation of loop extrusion on the interphase genome.

25. Condensin pinches a short negatively supercoiled DNA loop during each round of ATP usage.

26. The cohesin complex of yeasts: sister chromatid cohesion and beyond.

27. Mechanical determinants of chromatin topology and gene expression.

28. STAG2-RAD21 complex: A unidirectional DNA ratchet mechanism in loop extrusion.

29. Regulation of cohesin‐mediated chromosome folding by PDS5 in mammals.

30. DNA hypermethylation/boundary control loss identified in retinoblastomas associated with genetic and epigenetic inactivation of the RB1 gene promoter

31. Condensin DC loads and spreads from recruitment sites to create loop-anchored TADs in C. elegans

32. It’s all in the numbers: Cohesin stoichiometry

33. Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion

34. Non-coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate

35. STAG2 promotes the myelination transcriptional program in oligodendrocytes

36. A walk through the SMC cycle: From catching DNAs to shaping the genome.

37. Clamping of DNA shuts the condensin neck gate.

38. Structural Maintenance of Chromosomes Complexes.

39. Keeping intracellular DNA untangled: A new role for condensin?

40. The two waves in single-cell 3D genomics.

41. Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries

42. Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation

43. Tandem CTCF sites function as insulators to balance spatial chromatin contacts and topological enhancer-promoter selection

44. CTCF as a boundary factor for cohesin-mediated loop extrusion: evidence for a multi-step mechanism

45. DNA hypermethylation/boundary control loss identified in retinoblastomas associated with genetic and epigenetic inactivation of the RB1 gene promoter.

46. Nse5/6 inhibits the Smc5/6 ATPase and modulates DNA substrate binding.

47. Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion.

48. On the choreography of genome folding: A grand pas de deux of cohesin and CTCF.

49. How DNA loop extrusion mediated by cohesin enables V(D)J recombination.

50. USP7 promotes IgA class switching through stabilizing RUNX3 for germline transcription activation.

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