1. SGAEMDA: Predicting miRNA-Disease Associations Based on Stacked Graph Autoencoder.
- Author
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Wang, Shudong, Lin, Boyang, Zhang, Yuanyuan, Qiao, Sibo, Wang, Fuyu, Wu, Wenhao, and Ren, Chuanru
- Subjects
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BREAST , *KIDNEY tumors , *MICRORNA , *FORECASTING , *PREVENTIVE medicine - Abstract
MicroRNA (miRNA)-disease association (MDA) prediction is critical for disease prevention, diagnosis, and treatment. Traditional MDA wet experiments, on the other hand, are inefficient and costly.Therefore, we proposed a multi-layer collaborative unsupervised training base model called SGAEMDA (Stacked Graph Autoencoder-Based Prediction of Potential miRNA-Disease Associations). First, from the original miRNA and disease data, we defined two types of initial features: similarity features and association features. Second, stacked graph autoencoder is then used to learn unsupervised low-dimensional representations of meaningful higher-order similarity features, and we concatenate the association features with the learned low-dimensional representations to obtain the final miRNA-disease pair features. Finally, we used a multilayer perceptron (MLP) to predict scores for unknown miRNA-disease associations. SGAEMDA achieved a mean area under the ROC curve of 0.9585 and 0.9516 in 5-fold and 10-fold cross-validation, which is significantly higher than the other baseline methods. Furthermore, case studies have shown that SGAEMDA can accurately predict candidate miRNAs for brain, breast, colon, and kidney neoplasms. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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