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A proper classification of 3D point clouds allows fully exploiting data potentiality in assessing and preserving cultural heritage. Point cloud classification workflow is commonly based on the selection and extraction of respective geometric features. Although several research activities have investigated the impact of geometric features on classification outcomes accuracy, only a few works focused on their accuracy and reliability. This paper investigates the accuracy of 3D point cloud geometric features through a statistical analysis based on their corresponding eigenvalues and covariance with the aim of exploiting their effectiveness for cultural heritage classification. The proposed approach was separately applied on two high-quality 3D point clouds of the All Saints’ Monastery of Cuti (Bari, Southern Italy), generated using two competing survey techniques: Remotely Piloted Aircraft System (RPAS) Structure from Motion (SfM) and Multi View Stereo (MVS) techniques and Terrestrial Laser Scanner (TLS). Point cloud compatibility was guaranteed through re-alignment and co-registration of data. The geometric features accuracy obtained by adopting the RPAS digital photogrammetric and TLS models was consequently analyzed and presented. Lastly, a discussion on convergences and divergences of these results is also provided.