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1. High-resolution epidemiological landscape from  ~290,000 SARS-CoV-2 genomes from Denmark

3. Context-specific emergence and growth of the SARS-CoV-2 Delta variant

4. Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK.

5. Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador.

6. Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework.

7. Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

8. Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

9. A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

10. Genomic epidemiology of early SARS-CoV-2 transmission dynamics in Bangladesh

11. Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology.

12. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.

13. The Changing Epidemiological Profile of HIV-1 Subtype B Epidemic in Ukraine.

14. Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

15. Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

16. Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study

18. The impact of viral mutations on recognition by SARS-CoV-2 specific T cells

19. Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study

20. How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort

21. Redefining the treponemal history through pre-Columbian genomes from Brazil

23. Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

24. V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation

27. How much should we sequence? An analysis of the Swiss SARS- CoV-2 surveillance effort

28. The Eta Carinae 2020 periastron passage as seen by H.E.S.S.

31. Taming the BEAST—A Community Teaching Material Resource for BEAST 2

32. Genomic epidemiology of Mycobacterium bovis infection in sympatric badger and cattle populations in Northern Ireland

33. Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

34. Ancient chicken remains reveal the origins of virulence in Marek’s disease virus.

35. Inferring patterns of recombination and divergence with ancient and modern treponemal genomes

37. Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data

39. Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission

41. Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

42. COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

43. The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

44. Context-specific emergence and growth of the SARS-CoV-2 Delta variant

45. Context-specific emergence and growth of the SARS-CoV-2 Delta variant

46. Genomic Epidemiology of Early SARS-CoV-2 Transmission Dynamics, Gujarat, India

49. Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study

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