1,444 results on '"den Braber, A"'
Search Results
2. Food-sourcing from on-farm trees mediates positive relationships between tree cover and dietary quality in Malawi
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Vansant, Emilie, den Braber, Bowy, Hall, Charlotte, Kamoto, Judith, Reiner, Florian, Oldekop, Johan, and Rasmussen, Laura Vang
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- 2024
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3. Socio-economic and environmental trade-offs in Amazonian protected areas and Indigenous territories revealed by assessing competing land uses
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den Braber, Bowy, Oldekop, Johan A., Devenish, Katie, Godar, Javier, Nolte, Christoph, Schmoeller, Marina, and Evans, Karl L.
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- 2024
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4. The importance of different forest management systems for people’s dietary quality in Tanzania
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Olesen, R. S., Reiner, F., den Braber, B., Hall, C., Kilawe, C. J., Kinabo, J., Msuya, J., and Rasmussen, L. V.
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- 2024
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5. Amyloid-PET imaging predicts functional decline in clinically normal individuals
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Quenon, Lisa, Collij, Lyduine E., Garcia, David Vállez, Lopes Alves, Isadora, Gérard, Thomas, Malotaux, Vincent, Huyghe, Lara, Gispert, Juan Domingo, Jessen, Frank, Visser, Pieter Jelle, den Braber, Anouk, Ritchie, Craig W., Boada, Mercè, Marquié, Marta, Vandenberghe, Rik, Luckett, Emma S., Schöll, Michael, Frisoni, Giovanni B., Buckley, Christopher, Stephens, Andrew, Altomare, Daniele, Ford, Lisa, Birck, Cindy, Mett, Anja, Gismondi, Rossella, Wolz, Robin, Grootoonk, Sylke, Manber, Richard, Shekari, Mahnaz, Lhommel, Renaud, Dricot, Laurence, Ivanoiu, Adrian, Farrar, Gill, Barkhof, Frederik, and Hanseeuw, Bernard J.
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- 2024
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6. Amyloid-PET imaging predicts functional decline in clinically normal individuals
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Lisa Quenon, Lyduine E. Collij, David Vállez Garcia, Isadora Lopes Alves, Thomas Gérard, Vincent Malotaux, Lara Huyghe, Juan Domingo Gispert, Frank Jessen, Pieter Jelle Visser, Anouk den Braber, Craig W. Ritchie, Mercè Boada, Marta Marquié, Rik Vandenberghe, Emma S. Luckett, Michael Schöll, Giovanni B. Frisoni, Christopher Buckley, Andrew Stephens, Daniele Altomare, Lisa Ford, Cindy Birck, Anja Mett, Rossella Gismondi, Robin Wolz, Sylke Grootoonk, Richard Manber, Mahnaz Shekari, Renaud Lhommel, Laurence Dricot, Adrian Ivanoiu, Gill Farrar, Frederik Barkhof, Bernard J. Hanseeuw, and the AMYPAD Consortium
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Amyloid-PET ,Centiloid ,Preclinical Alzheimer ,Functional decline ,Instrumental activities of daily living ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background There is good evidence that elevated amyloid-β (Aβ) positron emission tomography (PET) signal is associated with cognitive decline in clinically normal (CN) individuals. However, it is less well established whether there is an association between the Aβ burden and decline in daily living activities in this population. Moreover, Aβ-PET Centiloids (CL) thresholds that can optimally predict functional decline have not yet been established. Methods Cross-sectional and longitudinal analyses over a mean three-year timeframe were performed on the European amyloid-PET imaging AMYPAD-PNHS dataset that phenotypes 1260 individuals, including 1032 CN individuals and 228 participants with questionable functional impairment. Amyloid-PET was assessed continuously on the Centiloid (CL) scale and using Aβ groups (CL 50 = Aβ+). Functional abilities were longitudinally assessed using the Clinical Dementia Rating (Global-CDR, CDR-SOB) and the Amsterdam Instrumental Activities of Daily Living Questionnaire (A-IADL-Q). The Global-CDR was available for the 1260 participants at baseline, while baseline CDR-SOB and A-IADL-Q scores and longitudinal functional data were available for different subsamples that had similar characteristics to those of the entire sample. Results Participants included 765 Aβ- (61%, Mdn age = 66.0, IQR age = 61.0–71.0; 59% women), 301 Aβ± (24%; Mdn age = 69.0, IQR age = 64.0–75.0; 53% women) and 194 Aβ+ individuals (15%, Mdn age = 73.0, IQR age = 68.0–78.0; 53% women). Cross-sectionally, CL values were associated with CDR outcomes. Longitudinally, baseline CL values predicted prospective changes in the CDR-SOB (b CL*Time = 0.001/CL/year, 95% CI [0.0005,0.0024], p = .003) and A-IADL-Q (b CL*Time = -0.010/CL/year, 95% CI [-0.016,-0.004], p = .002) scores in initially CN participants. Increased clinical progression (Global-CDR > 0) was mainly observed in Aβ+ CN individuals (HR Aβ+ vs Aβ- = 2.55, 95% CI [1.16,5.60], p = .020). Optimal thresholds for predicting decline were found at 41 CL using the CDR-SOB (b Aβ+ vs Aβ- = 0.137/year, 95% CI [0.069,0.206], p
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- 2024
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7. Replaying the Past: Belgian Pop Band dEUS’s Return to Early Work
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van den Braber, Helleke, Gieskes, Mette, editor, and Roza, Mathilde, editor
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- 2024
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8. Cerebrospinal fluid proteomics in patients with Alzheimer’s disease reveals five molecular subtypes with distinct genetic risk profiles
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Tijms, Betty M., Vromen, Ellen M., Mjaavatten, Olav, Holstege, Henne, Reus, Lianne M., van der Lee, Sven, Wesenhagen, Kirsten E. J., Lorenzini, Luigi, Vermunt, Lisa, Venkatraghavan, Vikram, Tesi, Niccoló, Tomassen, Jori, den Braber, Anouk, Goossens, Julie, Vanmechelen, Eugeen, Barkhof, Frederik, Pijnenburg, Yolande A. L., van der Flier, Wiesje M., Teunissen, Charlotte E., Berven, Frode S., and Visser, Pieter Jelle
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- 2024
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9. Consequences of Data Loss on Clinical Decision-Making in Continuous Glucose Monitoring: Retrospective Cohort Study
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Niala den Braber, Carlijn I R Braem, Miriam M R Vollenbroek-Hutten, Hermie J Hermens, Thomas Urgert, Utku S Yavuz, Peter H Veltink, and Gozewijn D Laverman
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Medical technology ,R855-855.5 - Abstract
BackgroundThe impact of missing data on individual continuous glucose monitoring (CGM) data is unknown but can influence clinical decision-making for patients. ObjectiveWe aimed to investigate the consequences of data loss on glucose metrics in individual patient recordings from continuous glucose monitors and assess its implications on clinical decision-making. MethodsThe CGM data were collected from patients with type 1 and 2 diabetes using the FreeStyle Libre sensor (Abbott Diabetes Care). We selected 7-28 days of 24 hours of continuous data without any missing values from each individual patient. To mimic real-world data loss, missing data ranging from 5% to 50% were introduced into the data set. From this modified data set, clinical metrics including time below range (TBR), TBR level 2 (TBR2), and other common glucose metrics were calculated in the data sets with and that without data loss. Recordings in which glucose metrics deviated relevantly due to data loss, as determined by clinical experts, were defined as expert panel boundary error (εEPB). These errors were expressed as a percentage of the total number of recordings. The errors for the recordings with glucose management indicator
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- 2024
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10. A monodispersed metal-complexing peptide-based polymer for mass cytometry enabling spectral applications
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Verhoeff, Jan, van Asten, Saskia, Kuijper, Lisan, van den Braber, Marlous, Amstalden-van Hove, Erika, Haselberg, Rob, Kalay, Hakan, and Garcia-Vallejo, Juan J.
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- 2024
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11. Forest regrowth improves people’s dietary quality in Nigeria
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Rasmussen, Laura Vang, den Braber, Bowy, Hall, Charlotte M., Rhemtulla, Jeanine M., Fagan, Matthew E., and Sunderland, Terry
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- 2023
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12. Wild foods contribute to women’s higher dietary diversity in India
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Cheek, Jennifer Zavaleta, Lambrecht, Nathalie J., den Braber, Bowy, Akanchha, Nirali, Govindarajulu, Dhanapal, Jones, Andrew D., Chhatre, Ashwini, and Rasmussen, Laura Vang
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- 2023
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13. What shapes yields of East African Highland banana? An explorative study from farmers’ fields
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den Braber, Harmen, van de Ven, Gerrie, van Heerwaarden, Joost, Marinus, Wytze, Ronner, Esther, Descheemaeker, Katrien, and Taulya, Godfrey
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- 2024
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14. Subcortical volumes across the lifespan: Data from 18,605 healthy individuals aged 3-90 years.
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Dima, Danai, Modabbernia, Amirhossein, Papachristou, Efstathios, Doucet, Gaelle E, Agartz, Ingrid, Aghajani, Moji, Akudjedu, Theophilus N, Albajes-Eizagirre, Anton, Alnaes, Dag, Alpert, Kathryn I, Andersson, Micael, Andreasen, Nancy C, Andreassen, Ole A, Asherson, Philip, Banaschewski, Tobias, Bargallo, Nuria, Baumeister, Sarah, Baur-Streubel, Ramona, Bertolino, Alessandro, Bonvino, Aurora, Boomsma, Dorret I, Borgwardt, Stefan, Bourque, Josiane, Brandeis, Daniel, Breier, Alan, Brodaty, Henry, Brouwer, Rachel M, Buitelaar, Jan K, Busatto, Geraldo F, Buckner, Randy L, Calhoun, Vincent, Canales-Rodríguez, Erick J, Cannon, Dara M, Caseras, Xavier, Castellanos, Francisco X, Cervenka, Simon, Chaim-Avancini, Tiffany M, Ching, Christopher RK, Chubar, Victoria, Clark, Vincent P, Conrod, Patricia, Conzelmann, Annette, Crespo-Facorro, Benedicto, Crivello, Fabrice, Crone, Eveline A, Dannlowski, Udo, Dale, Anders M, Davey, Christopher, de Geus, Eco JC, de Haan, Lieuwe, de Zubicaray, Greig I, den Braber, Anouk, Dickie, Erin W, Di Giorgio, Annabella, Doan, Nhat Trung, Dørum, Erlend S, Ehrlich, Stefan, Erk, Susanne, Espeseth, Thomas, Fatouros-Bergman, Helena, Fisher, Simon E, Fouche, Jean-Paul, Franke, Barbara, Frodl, Thomas, Fuentes-Claramonte, Paola, Glahn, David C, Gotlib, Ian H, Grabe, Hans-Jörgen, Grimm, Oliver, Groenewold, Nynke A, Grotegerd, Dominik, Gruber, Oliver, Gruner, Patricia, Gur, Rachel E, Gur, Ruben C, Hahn, Tim, Harrison, Ben J, Hartman, Catharine A, Hatton, Sean N, Heinz, Andreas, Heslenfeld, Dirk J, Hibar, Derrek P, Hickie, Ian B, Ho, Beng-Choon, Hoekstra, Pieter J, Hohmann, Sarah, Holmes, Avram J, Hoogman, Martine, Hosten, Norbert, Howells, Fleur M, Hulshoff Pol, Hilleke E, Huyser, Chaim, Jahanshad, Neda, James, Anthony, Jernigan, Terry L, Jiang, Jiyang, Jönsson, Erik G, Joska, John A, Kahn, Rene, and Kalnin, Andrew
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Karolinska Schizophrenia Project ,Amygdala ,Hippocampus ,Thalamus ,Corpus Striatum ,Humans ,Human Development ,Adolescent ,Adult ,Aged ,Aged ,80 and over ,Middle Aged ,Child ,Child ,Preschool ,Female ,Male ,Young Adult ,Neuroimaging ,ENIGMA ,brain morphometry ,longitudinal trajectories ,multisite ,Neurosciences ,Aging ,Aetiology ,2.1 Biological and endogenous factors ,Mental health ,Cognitive Sciences ,Experimental Psychology - Abstract
Age has a major effect on brain volume. However, the normative studies available are constrained by small sample sizes, restricted age coverage and significant methodological variability. These limitations introduce inconsistencies and may obscure or distort the lifespan trajectories of brain morphometry. In response, we capitalized on the resources of the Enhancing Neuroimaging Genetics through Meta-Analysis (ENIGMA) Consortium to examine age-related trajectories inferred from cross-sectional measures of the ventricles, the basal ganglia (caudate, putamen, pallidum, and nucleus accumbens), the thalamus, hippocampus and amygdala using magnetic resonance imaging data obtained from 18,605 individuals aged 3-90 years. All subcortical structure volumes were at their maximum value early in life. The volume of the basal ganglia showed a monotonic negative association with age thereafter; there was no significant association between age and the volumes of the thalamus, amygdala and the hippocampus (with some degree of decline in thalamus) until the sixth decade of life after which they also showed a steep negative association with age. The lateral ventricles showed continuous enlargement throughout the lifespan. Age was positively associated with inter-individual variability in the hippocampus and amygdala and the lateral ventricles. These results were robust to potential confounders and could be used to examine the functional significance of deviations from typical age-related morphometric patterns.
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- 2022
15. Investigating chromosomal instability in long-term survivors with glioblastoma and grade 4 astrocytoma
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Jochem K. H. Spoor, May den Braber, Clemens M. F. Dirven, Adam Pennycuick, Jirina Bartkova, Jiri Bartek, Vera van Dis, Thierry P. P. van den Bosch, Sieger Leenstra, and Subramanian Venkatesan
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high grade glioma ,glioblastoma multiforme ,astrocytoma ,chromosomal instability ,genome instability ,IDH ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundOnly a small group of patients with glioblastoma multiforme (GBM) survives more than 36 months, so-called long-term survivors. Recent studies have shown that chromosomal instability (CIN) plays a prognostic and predictive role among different cancer types. Here, we compared histological (chromosome missegregation) and bioinformatic metrics (CIN signatures) of CIN in tumors of GBM typical survivors (≤36 months overall survival), GBM long-term survivors and isocitrate dehydrogenase (IDH)-mutant grade 4 astrocytomas.MethodsTumor sections of all gliomas were examined for anaphases and chromosome missegregation. Further CIN signature activity analysis in the The Cancer Genome Atlas (TCGA)-GBM cohort was performed.ResultsOur data show that chromosome missegregation is pervasive in high grade gliomas and is not different between the 3 groups. We find only limited evidence of altered CIN levels in tumors of GBM long-term survivors relative to the other groups, since a significant depletion in CIN signature 11 relative to GBM typical survivors was the only alteration detected. In contrast, within IDH-mutant grade 4 astrocytomas we detected a significant enrichment of CIN signature 5 and 10 activities and a depletion of CIN signature 1 activity relative to tumors of GBM typical survivors.ConclusionsOur data suggest that CIN is pervasive in high grade gliomas, however this is unlikely to be a major contributor to the phenomenon of long-term survivorship in GBM. Nevertheless, further evaluation of specific types of CIN (signatures) could have prognostic value in patients suffering from grade 4 gliomas.
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- 2024
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16. The immunological landscape of peripheral blood in glioblastoma patients and immunological consequences of age and dexamethasone treatment
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Sophie A. Dusoswa, Jan Verhoeff, Saskia van Asten, Joyce Lübbers, Marlous van den Braber, Sophie Peters, Sanne Abeln, Matheus H.W. Crommentuijn, Pieter Wesseling, William Peter Vandertop, Jos W. R. Twisk, Thomas Würdinger, David Noske, Yvette van Kooyk, and Juan J. Garcia-Vallejo
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glioblastoma ,mass cytometry ,immune monitoring ,dexamethasone ,large cohort ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundGlioblastomas manipulate the immune system both locally and systemically, yet, glioblastoma-associated changes in peripheral blood immune composition are poorly studied. Age and dexamethasone administration in glioblastoma patients have been hypothesized to limit the effectiveness of immunotherapy, but their effects remain unclear. We compared peripheral blood immune composition in patients with different types of brain tumor to determine the influence of age, dexamethasone treatment, and tumor volume.MethodsHigh-dimensional mass cytometry was used to characterise peripheral blood mononuclear cells of 169 patients with glioblastoma, lower grade astrocytoma, metastases and meningioma. We used blood from medically-refractory epilepsy patients and healthy controls as control groups. Immune phenotyping was performed using FlowSOM and t-SNE analysis in R followed by supervised annotation of the resulting clusters. We conducted multiple linear regression analysis between intracranial pathology and cell type abundance, corrected for clinical variables. We tested correlations between cell type abundance and survival with Cox-regression analyses.ResultsGlioblastoma patients had significantly fewer naive CD4+ T cells, but higher percentages of mature NK cells than controls. Decreases of naive CD8+ T cells and alternative monocytes and an increase of memory B cells in glioblastoma patients were influenced by age and dexamethasone treatment, and only memory B cells by tumor volume. Progression free survival was associated with percentages of CD4+ regulatory T cells and double negative T cells.ConclusionHigh-dimensional mass cytometry of peripheral blood in patients with different types of intracranial tumor provides insight into the relation between intracranial pathology and peripheral immune status. Wide immunosuppression associated with age and pre-operative dexamethasone treatment provide further evidence for their deleterious effects on treatment with immunotherapy.
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- 2024
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17. Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group
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Jia, Tianye, Chu, Congying, Liu, Yun, van Dongen, Jenny, Papastergios, Evangelos, Armstrong, Nicola J, Bastin, Mark E, Carrillo-Roa, Tania, den Braber, Anouk, Harris, Mathew, Jansen, Rick, Liu, Jingyu, Luciano, Michelle, Ori, Anil PS, Roiz Santiañez, Roberto, Ruggeri, Barbara, Sarkisyan, Daniil, Shin, Jean, Sungeun, Kim, Tordesillas Gutiérrez, Diana, van’t Ent, Dennis, Ames, David, Artiges, Eric, Bakalkin, Georgy, Banaschewski, Tobias, Bokde, Arun LW, Brodaty, Henry, Bromberg, Uli, Brouwer, Rachel, Büchel, Christian, Burke Quinlan, Erin, Cahn, Wiepke, de Zubicaray, Greig I, Ehrlich, Stefan, Ekström, Tomas J, Flor, Herta, Fröhner, Juliane H, Frouin, Vincent, Garavan, Hugh, Gowland, Penny, Heinz, Andreas, Hoare, Jacqueline, Ittermann, Bernd, Jahanshad, Neda, Jiang, Jiyang, Kwok, John B, Martin, Nicholas G, Martinot, Jean-Luc, Mather, Karen A, McMahon, Katie L, McRae, Allan F, Nees, Frauke, Papadopoulos Orfanos, Dimitri, Paus, Tomáš, Poustka, Luise, Sämann, Philipp G, Schofield, Peter R, Smolka, Michael N, Stein, Dan J, Strike, Lachlan T, Teeuw, Jalmar, Thalamuthu, Anbupalam, Trollor, Julian, Walter, Henrik, Wardlaw, Joanna M, Wen, Wei, Whelan, Robert, Apostolova, Liana G, Binder, Elisabeth B, Boomsma, Dorret I, Calhoun, Vince, Crespo-Facorro, Benedicto, Deary, Ian J, Hulshoff Pol, Hilleke, Ophoff, Roel A, Pausova, Zdenka, Sachdev, Perminder S, Saykin, Andrew, Wright, Margaret J, Thompson, Paul M, Schumann, Gunter, and Desrivières, Sylvane
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Biological Psychology ,Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Psychology ,Mental Health ,Neurosciences ,Genetics ,Human Genome ,Diabetes ,Neurodegenerative ,2.1 Biological and endogenous factors ,Aetiology ,Neurological ,Mental health ,CpG Islands ,DNA Methylation ,Epigenesis ,Genetic ,Epigenome ,Genome-Wide Association Study ,Humans ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Clinical sciences ,Biological psychology ,Clinical and health psychology - Abstract
DNA methylation, which is modulated by both genetic factors and environmental exposures, may offer a unique opportunity to discover novel biomarkers of disease-related brain phenotypes, even when measured in other tissues than brain, such as blood. A few studies of small sample sizes have revealed associations between blood DNA methylation and neuropsychopathology, however, large-scale epigenome-wide association studies (EWAS) are needed to investigate the utility of DNA methylation profiling as a peripheral marker for the brain. Here, in an analysis of eleven international cohorts, totalling 3337 individuals, we report epigenome-wide meta-analyses of blood DNA methylation with volumes of the hippocampus, thalamus and nucleus accumbens (NAcc)-three subcortical regions selected for their associations with disease and heritability and volumetric variability. Analyses of individual CpGs revealed genome-wide significant associations with hippocampal volume at two loci. No significant associations were found for analyses of thalamus and nucleus accumbens volumes. Cluster-based analyses revealed additional differentially methylated regions (DMRs) associated with hippocampal volume. DNA methylation at these loci affected expression of proximal genes involved in learning and memory, stem cell maintenance and differentiation, fatty acid metabolism and type-2 diabetes. These DNA methylation marks, their interaction with genetic variants and their impact on gene expression offer new insights into the relationship between epigenetic variation and brain structure and may provide the basis for biomarker discovery in neurodegeneration and neuropsychiatric conditions.
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- 2021
18. New technololgies for tissue replacement: Highlighting technologies for surgical management of chronic wounds
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Piaggesi, Alberto, Bassetto, Franco, den Braber, Edwin, Dalla Paola, Luca, Marques, Alexandra, Palla, Ilaria, Raspovic, Katherine, Scarpa, Carlotta, Teot, Luc, Triulzi, Isotta, Turchetti, Giuseppe, and Becquemin, Jean-Pierre
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- 2023
19. Chapter 7. How could hybrid true potato seed foster development in potato sectors in East Africa?
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den Braber, H., primary, de Vries, M.E., additional, Kacheyo, O.C., additional, Struik, P.C., additional, and Descheemaeker, K., additional
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- 2023
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20. The heritability of vocal tract structures estimated from structural MRI in a large cohort of Dutch twins
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Dediu, Dan, Jennings, Emily M., van’t Ent, Dennis, Moisik, Scott R., Di Pisa, Grazia, Schulze, Janna, de Geus, Eco J. C., den Braber, Anouk, Dolan, Conor V., and Boomsma, Dorret I.
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- 2022
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21. High-dimensional phenotyping of the peripheral immune response in community-acquired pneumonia
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Tom D. Y. Reijnders, Alex R. Schuurman, Jan Verhoeff, Marlous van den Braber, Renée A. Douma, Daniël R. Faber, Alberta G. A. Paul, W. Joost Wiersinga, Anno Saris, Juan J. Garcia Vallejo, and Tom van der Poll
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pneumonia ,immunophenotyping ,host response ,COVID-19 ,spectral flow cytometry ,monocytes ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundCommunity-acquired pneumonia (CAP) represents a major health burden worldwide. Dysregulation of the immune response plays an important role in adverse outcomes in patients with CAP.MethodsWe analyzed peripheral blood mononuclear cells by 36-color spectral flow cytometry in adult patients hospitalized for CAP (n=40), matched control subjects (n=31), and patients hospitalized for COVID-19 (n=35).ResultsWe identified 86 immune cell metaclusters, 19 of which (22.1%) were differentially abundant in patients with CAP versus matched controls. The most notable differences involved classical monocyte metaclusters, which were more abundant in CAP and displayed phenotypic alterations reminiscent of immunosuppression, increased susceptibility to apoptosis, and enhanced expression of chemokine receptors. Expression profiles on classical monocytes, driven by CCR7 and CXCR5, divided patients with CAP into two clusters with a distinct inflammatory response and disease course. The peripheral immune response in patients with CAP was highly similar to that in patients with COVID-19, but increased CCR7 expression on classical monocytes was only present in CAP.ConclusionCAP is associated with profound cellular changes in blood that mainly relate to classical monocytes and largely overlap with the immune response detected in COVID-19.
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- 2023
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22. Dose response of the 16p11.2 distal copy number variant on intracranial volume and basal ganglia
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Sønderby, Ida E, Gústafsson, Ómar, Doan, Nhat Trung, Hibar, Derrek P, Martin-Brevet, Sandra, Abdellaoui, Abdel, Ames, David, Amunts, Katrin, Andersson, Michael, Armstrong, Nicola J, Bernard, Manon, Blackburn, Nicholas, Blangero, John, Boomsma, Dorret I, Bralten, Janita, Brattbak, Hans-Richard, Brodaty, Henry, Brouwer, Rachel M, Bülow, Robin, Calhoun, Vince, Caspers, Svenja, Cavalleri, Gianpiero, Chen, Chi-Hua, Cichon, Sven, Ciufolini, Simone, Corvin, Aiden, Crespo-Facorro, Benedicto, Curran, Joanne E, Dale, Anders M, Dalvie, Shareefa, Dazzan, Paola, de Geus, Eco JC, de Zubicaray, Greig I, de Zwarte, Sonja MC, Delanty, Norman, den Braber, Anouk, Desrivières, Sylvane, Donohoe, Gary, Draganski, Bogdan, Ehrlich, Stefan, Espeseth, Thomas, Fisher, Simon E, Franke, Barbara, Frouin, Vincent, Fukunaga, Masaki, Gareau, Thomas, Glahn, David C, Grabe, Hans, Groenewold, Nynke A, Haavik, Jan, Håberg, Asta, Hashimoto, Ryota, Hehir-Kwa, Jayne Y, Heinz, Andreas, Hillegers, Manon HJ, Hoffmann, Per, Holleran, Laurena, Hottenga, Jouke-Jan, Hulshoff, Hilleke E, Ikeda, Masashi, Jahanshad, Neda, Jernigan, Terry, Jockwitz, Christiane, Johansson, Stefan, Jonsdottir, Gudrun A, Jönsson, Erik G, Kahn, Rene, Kaufmann, Tobias, Kelly, Sinead, Kikuchi, Masataka, Knowles, Emma EM, Kolskår, Knut K, Kwok, John B, Hellard, Stephanie Le, Leu, Costin, Liu, Jingyu, Lundervold, Astri J, Lundervold, Arvid, Martin, Nicholas G, Mather, Karen, Mathias, Samuel R, McCormack, Mark, McMahon, Katie L, McRae, Allan, Milaneschi, Yuri, Moreau, Clara, Morris, Derek, Mothersill, David, Mühleisen, Thomas W, Murray, Robin, Nordvik, Jan E, Nyberg, Lars, Olde Loohuis, Loes M, Ophoff, Roel, Paus, Tomas, Pausova, Zdenka, Penninx, Brenda, Peralta, Juan M, Pike, Bruce, and Prieto, Carlos
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Intellectual and Developmental Disabilities (IDD) ,Neurosciences ,Brain Disorders ,Autism ,Biomedical Imaging ,Mental Health ,Mental health ,Adult ,Autism Spectrum Disorder ,Autistic Disorder ,Basal Ganglia ,Brain ,Chromosome Deletion ,Chromosome Disorders ,Chromosome Duplication ,Chromosomes ,Human ,Pair 16 ,DNA Copy Number Variations ,Databases ,Factual ,Female ,Globus Pallidus ,Humans ,Image Processing ,Computer-Assisted ,Intellectual Disability ,Magnetic Resonance Imaging ,Male ,Middle Aged ,Neurodevelopmental Disorders ,Organ Size ,Putamen ,Schizophrenia ,16p11.2 European Consortium ,for the ENIGMA-CNV working group ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry - Abstract
Carriers of large recurrent copy number variants (CNVs) have a higher risk of developing neurodevelopmental disorders. The 16p11.2 distal CNV predisposes carriers to e.g., autism spectrum disorder and schizophrenia. We compared subcortical brain volumes of 12 16p11.2 distal deletion and 12 duplication carriers to 6882 non-carriers from the large-scale brain Magnetic Resonance Imaging collaboration, ENIGMA-CNV. After stringent CNV calling procedures, and standardized FreeSurfer image analysis, we found negative dose-response associations with copy number on intracranial volume and on regional caudate, pallidum and putamen volumes (β = -0.71 to -1.37; P
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- 2020
23. Correction: Dose response of the 16p11.2 distal copy number variant on intracranial volume and basal ganglia.
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Sønderby, Ida E, Gústafsson, Ómar, Doan, Nhat Trung, Hibar, Derrek P, Martin-Brevet, Sandra, Abdellaoui, Abdel, Ames, David, Amunts, Katrin, Andersson, Michael, Armstrong, Nicola J, Bernard, Manon, Blackburn, Nicholas, Blangero, John, Boomsma, Dorret I, Bralten, Janita, Brattbak, Hans-Richard, Brodaty, Henry, Brouwer, Rachel M, Bülow, Robin, Calhoun, Vince, Caspers, Svenja, Cavalleri, Gianpiero, Chen, Chi-Hua, Cichon, Sven, Ciufolini, Simone, Corvin, Aiden, Crespo-Facorro, Benedicto, Curran, Joanne E, Dale, Anders M, Dalvie, Shareefa, Dazzan, Paola, de Geus, Eco JC, de Zubicaray, Greig I, de Zwarte, Sonja MC, Delanty, Norman, den Braber, Anouk, Desrivières, Sylvane, Donohoe, Gary, Draganski, Bogdan, Ehrlich, Stefan, Espeseth, Thomas, Fisher, Simon E, Franke, Barbara, Frouin, Vincent, Fukunaga, Masaki, Gareau, Thomas, Glahn, David C, Grabe, Hans, Groenewold, Nynke A, Haavik, Jan, Håberg, Asta, Hashimoto, Ryota, Hehir-Kwa, Jayne Y, Heinz, Andreas, Hillegers, Manon HJ, Hoffmann, Per, Holleran, Laurena, Hottenga, Jouke-Jan, Hulshoff, Hilleke E, Ikeda, Masashi, Jahanshad, Neda, Jernigan, Terry, Jockwitz, Christiane, Johansson, Stefan, Jonsdottir, Gudrun A, Jönsson, Erik G, Kahn, Rene, Kaufmann, Tobias, Kelly, Sinead, Kikuchi, Masataka, Knowles, Emma EM, Kolskår, Knut K, Kwok, John B, Hellard, Stephanie Le, Leu, Costin, Liu, Jingyu, Lundervold, Astri J, Lundervold, Arvid, Martin, Nicholas G, Mather, Karen, Mathias, Samuel R, McCormack, Mark, McMahon, Katie L, McRae, Allan, Milaneschi, Yuri, Moreau, Clara, Morris, Derek, Mothersill, David, Mühleisen, Thomas W, Murray, Robin, Nordvik, Jan E, Nyberg, Lars, Olde Loohuis, Loes M, Ophoff, Roel, Paus, Tomas, Pausova, Zdenka, Penninx, Brenda, Peralta, Juan M, Pike, Bruce, and Prieto, Carlos
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16p11.2 European Consortium ,for the ENIGMA-CNV working group ,Neurosciences ,Psychiatry ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences - Abstract
Prior to and following the publication of this article the authors noted that the complete list of authors was not included in the main article and was only present in Supplementary Table 1. The author list in the original article has now been updated to include all authors, and Supplementary Table 1 has been removed. All other supplementary files have now been updated accordingly. Furthermore, in Table 1 of this Article, the replication cohort for the row Close relative in data set, n (%) was incorrect. All values have now been corrected to 0(0%). The publishers would like to apologise for this error and the inconvenience it may have caused.
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- 2020
24. Amyloid-β and APOE genotype predict memory decline in cognitively unimpaired older individuals independently of Alzheimer’s disease polygenic risk score
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Jori Tomassen, Anouk den Braber, Sven J. van der Lee, Lianne M. Reus, Elles Konijnenberg, Stephen F. Carter, Maqsood Yaqub, Bart N.M. van Berckel, Lyduine E. Collij, Dorret I. Boomsma, Eco J.C. de Geus, Philip Scheltens, Karl Herholz, Betty M. Tijms, and Pieter Jelle Visser
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Preclinical Alzheimer’s disease ,APOE genotype ,Polygenic risk score ,Amyloid-β ,Cognitive decline ,Neuropsychology ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background: What combination of risk factors for Alzheimer’s disease (AD) are most predictive of cognitive decline in cognitively unimpaired individuals remains largely unclear. We studied associations between APOE genotype, AD-Polygenic Risk Scores (AD-PRS), amyloid-β pathology and decline in cognitive functioning over time in a large sample of cognitively unimpaired older individuals. Methods: We included 276 cognitively unimpaired older individuals (75 ± 10 years, 63% female) from the EMIF-AD PreclinAD cohort. An AD-PRS was calculated including 83 genome-wide significant variants. The APOE gene was not included in the PRS and was analyzed separately. Baseline amyloid-β status was assessed by visual read of [18F]flutemetamol-PET standardized uptake value images. At baseline and follow-up (2.0 ± 0.4 years), the cognitive domains of memory, attention, executive function, and language were measured. We used generalized estimating equations corrected for age, sex and center to examine associations between APOE genotype and AD-PRS with amyloid-β status. Linear mixed models corrected for age, sex, center and education were used to examine associations between APOE genotype, AD-PRS and amyloid-β status, and their interaction on changes in cognitive functioning over time. Results: Fifty-two participants (19%) had abnormal amyloid-β, and 84 participants (31%) carried at least one APOE ε4 allele. APOE genotype and AD-PRS were both associated with abnormal amyloid-β status. Increasingly more risk-full APOE genotype, a high AD-PRS and an abnormal amyloid-β status were associated with steeper decline in memory functioning in separate models (all p ≤ 0.02). A model including 4-way interaction term (APOE×AD-PRS×amyloid-β×time) was not significant. When modelled together, both APOE genotype and AD-PRS predicted steeper decline in memory functioning (APOE β(SE)=-0.05(0.02); AD-PRS β(SE)=-0.04(0.01)). Additionally, when modelled together, both amyloid-β status and AD-PRS predicted a steeper decline in memory functioning (amyloid-β β(SE)=-0.07(0.04); AD-PRS β(SE)=-0.04(0.01)). Modelling both APOE genotype and amyloid-β status, we observed an interaction, in which APOE genotype was related to steeper decline in memory and language functioning in amyloid-β abnormal individuals only (β(SE)=-0.13(0.06); β(SE)=-0.22(0.07), respectively). Conclusion: Our results suggest that APOE genotype is related to steeper decline in memory and language functioning in individuals with abnormal amyloid-β only. Furthermore, independent of amyloid-β status other genetic risk variants contribute to memory decline in initially cognitively unimpaired older individuals.
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- 2022
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25. Manure matters: prospects for regional banana-livestock integration for sustainable intensification in South-West Uganda
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Harmen den Braber, Gerrie van de Ven, Esther Ronner, Wytze Marinus, Antoine Languillaume, Dennis Ochola, Godfrey Taulya, Ken E. Giller, and Katrien Descheemaeker
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east african highland banana ,crop-livestock integration ,potassium ,spatial analysis ,nutrient requirements ,cattle ,Agriculture - Abstract
In South-West Uganda, manure is highly valued for sustaining yields of East African Highland Banana, but it is in short supply. As a result, banana growers import manure from rangelands up to 50 km away. We aimed to explore the potential of this regional banana-livestock integration to meet crop nutrient requirements for sustainable intensification of banana cropping systems. We used a mixed-methods approach supported by detailed data collection. Multiple spatial levels were integrated: field-level modelling to determine long-term nutrient requirements, a household-level survey to characterize farmer practices, and a regional-level spatial analysis to map banana production and manure source areas. For median to 90th percentile banana yields (37-52 t FW/ha/year), minimum K requirements were 118–228 kg/ha/year. To supply this with manure, 10.5–20.5 t DM manure/ha/year would be needed, requiring 47–91 tropical livestock units and 27–52 ha of rangeland, far more than what is potentially available currently. However, using only manure to satisfy potassium requirements increases the risk of N losses due to nutrient imbalances likely to result from large manure applications. For sustainable intensification, manure supplemented with K-based fertilizers is a better option than manure alone, as it is more cost-effective and reduces potential N losses.
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- 2022
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26. Approaches to the study of poverty and environmental impacts of conservation interventions
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den Braber, Bowy, Evans, Karl, and Oldekop, Johan
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333.72 - Abstract
Reducing poverty and halting biodiversity loss are two crucial global goals. Protected areas (PAs) are an important example of how goals to reduce poverty and halt biodiversity loss interact. PAs aim to conserve biodiversity, but also have impacts on poverty. In this thesis I focus on the environmental and social impacts of protected areas using a suite of large datasets. Specifically, I focus on how our understanding of PA impacts can be improved by (1) assessing heterogeneity in more detail, (2) comparing impacts relative to impacts of other land uses, and (3) by using better data to study impacts in countries with currently insufficient data. In chapter 2 I assess how Nepali PAs influence poverty, extreme poverty, and inequality. I find that Nepali PAs reduced overall poverty and extreme poverty, and crucially, did not exacerbate inequality. I also find that tourism was a key driver in poverty reductions, but PAs also reduced extreme poverty in areas with few tourists. In chapter 3 I compare PA impacts relative to competing land uses and find that sustainable use PAs, agriculture and mining have led to different outcomes in forest cover and poverty in the Brazilian Amazon. I also show that PAs were effective in reducing deforestation compared to larger-sized landholdings, but not smallholders. I also show evidence that mining sites had more deforestation, but that mining sites also raised local income. In chapter 4 I test whether machine learning methods can be informative to estimate poverty in Tanzania using publicly available satellite imagery. I find that our machine learning methods can be used to estimate household consumption fairly accurately, but cannot be used to measure poverty change or multidimensional poverty. Combined, my findings highlight that PAs can reduce poverty and protect forests although impacts are highly heterogeneous and further scrutiny of PA impacts is needed in more countries. Novel methods using publicly available secondary data show promise to drastically improve the evidence base of PA impacts in data-poor countries where poverty is most prevalent.
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- 2019
27. Genetic architecture of subcortical brain structures in 38,851 individuals
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Satizabal, Claudia L, Adams, Hieab HH, Hibar, Derrek P, White, Charles C, Knol, Maria J, Stein, Jason L, Scholz, Markus, Sargurupremraj, Muralidharan, Jahanshad, Neda, Roshchupkin, Gennady V, Smith, Albert V, Bis, Joshua C, Jian, Xueqiu, Luciano, Michelle, Hofer, Edith, Teumer, Alexander, van der Lee, Sven J, Yang, Jingyun, Yanek, Lisa R, Lee, Tom V, Li, Shuo, Hu, Yanhui, Koh, Jia Yu, Eicher, John D, Desrivières, Sylvane, Arias-Vasquez, Alejandro, Chauhan, Ganesh, Athanasiu, Lavinia, Rentería, Miguel E, Kim, Sungeun, Hoehn, David, Armstrong, Nicola J, Chen, Qiang, Holmes, Avram J, den Braber, Anouk, Kloszewska, Iwona, Andersson, Micael, Espeseth, Thomas, Grimm, Oliver, Abramovic, Lucija, Alhusaini, Saud, Milaneschi, Yuri, Papmeyer, Martina, Axelsson, Tomas, Ehrlich, Stefan, Roiz-Santiañez, Roberto, Kraemer, Bernd, Håberg, Asta K, Jones, Hannah J, Pike, G Bruce, Stein, Dan J, Stevens, Allison, Bralten, Janita, Vernooij, Meike W, Harris, Tamara B, Filippi, Irina, Witte, A Veronica, Guadalupe, Tulio, Wittfeld, Katharina, Mosley, Thomas H, Becker, James T, Doan, Nhat Trung, Hagenaars, Saskia P, Saba, Yasaman, Cuellar-Partida, Gabriel, Amin, Najaf, Hilal, Saima, Nho, Kwangsik, Mirza-Schreiber, Nazanin, Arfanakis, Konstantinos, Becker, Diane M, Ames, David, Goldman, Aaron L, Lee, Phil H, Boomsma, Dorret I, Lovestone, Simon, Giddaluru, Sudheer, Le Hellard, Stephanie, Mattheisen, Manuel, Bohlken, Marc M, Kasperaviciute, Dalia, Schmaal, Lianne, Lawrie, Stephen M, Agartz, Ingrid, Walton, Esther, Tordesillas-Gutierrez, Diana, Davies, Gareth E, Shin, Jean, Ipser, Jonathan C, Vinke, Louis N, Hoogman, Martine, Jia, Tianye, Burkhardt, Ralph, Klein, Marieke, Crivello, Fabrice, Janowitz, Deborah, Carmichael, Owen, Haukvik, Unn K, Aribisala, Benjamin S, and Schmidt, Helena
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Biological Sciences ,Genetics ,Brain Disorders ,Mental Health ,Neurosciences ,Human Genome ,2.1 Biological and endogenous factors ,Neurological ,Adult ,Aged ,Animals ,Brain ,Cohort Studies ,Drosophila melanogaster ,Genetic Variation ,Genome-Wide Association Study ,Humans ,Magnetic Resonance Imaging ,Middle Aged ,Neurodevelopmental Disorders ,Organ Size ,Medical and Health Sciences ,Developmental Biology ,Agricultural biotechnology ,Bioinformatics and computational biology - Abstract
Subcortical brain structures are integral to motion, consciousness, emotions and learning. We identified common genetic variation related to the volumes of the nucleus accumbens, amygdala, brainstem, caudate nucleus, globus pallidus, putamen and thalamus, using genome-wide association analyses in almost 40,000 individuals from CHARGE, ENIGMA and UK Biobank. We show that variability in subcortical volumes is heritable, and identify 48 significantly associated loci (40 novel at the time of analysis). Annotation of these loci by utilizing gene expression, methylation and neuropathological data identified 199 genes putatively implicated in neurodevelopment, synaptic signaling, axonal transport, apoptosis, inflammation/infection and susceptibility to neurological disorders. This set of genes is significantly enriched for Drosophila orthologs associated with neurodevelopmental phenotypes, suggesting evolutionarily conserved mechanisms. Our findings uncover novel biology and potential drug targets underlying brain development and disease.
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- 2019
28. Amyloid-β and APOE genotype predict memory decline in cognitively unimpaired older individuals independently of Alzheimer’s disease polygenic risk score
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Tomassen, Jori, den Braber, Anouk, van der Lee, Sven J., Reus, Lianne M., Konijnenberg, Elles, Carter, Stephen F., Yaqub, Maqsood, van Berckel, Bart N.M., Collij, Lyduine E., Boomsma, Dorret I., de Geus, Eco J.C., Scheltens, Philip, Herholz, Karl, Tijms, Betty M., and Visser, Pieter Jelle
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- 2022
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29. The Contribution of Postprandial Glucose Levels to Hyperglycemia in Type 2 Diabetes Calculated from Continuous Glucose Monitoring Data: Real World Evidence from the DIALECT-2 Cohort.
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den Braber, Niala, Vollenbroek-Hutten, Miriam M. R., Teunissen, Sacha E. M., Oosterwijk, Milou M., Kappert, Kilian D. R., and Laverman, Gozewijn D.
- Abstract
Background/Objectives: Traditional glycemic monitoring in type 2 diabetes is limited, whereas continuous glucose monitoring (CGM) offers better insights into glucose fluctuations. This study aimed to determine the correlations and relative contributions of fasting plasma glucose (FPG) and postprandial plasma glucose (PPG) levels to hyperglycemia. Methods: We utilized CGM and recorded carbohydrate intake data from lifestyle diaries of 59 patients enrolled in the Diabetes and Lifestyle Cohort Twente (DIALECT-2). Correlations between FPG and the glucose management indicator (GMI), FPG and Time Above Range (TAR), PPG and GMI, and PPG and TAR were conducted. Daily and mealtime relative contributions of PPG and FPG to glycated hemoglobin (HbA
1c ) and GMI were determined, considering two ranges: on target (<7.0%, 53 mmol/mol) and not on target (≥7.0%, 53 mmol/mol). Correlations between mealtime PPG and carbohydrate consumption were examined. Results: FPG and PPG correlated with GMI (r = 0.82 and 0.41, respectively, p < 0.05). The relative contribution of PPG in patients with HbA1c , GMI, and TAR values not on target was lower than in patients with HbA1c , GMI, and TAR values on target. When analyzing different mealtimes, patients with target GMI values had a higher PPG (73 ± 21%) than FPG after breakfast (27 ± 21%, p < 0.001). Individuals with elevated GMI levels had lower PPG after lunch (30 ± 20%), dinner (36 ± 23%), and snacks (34 ± 23%) than FPG. PPG after breakfast positively correlated (r = 0.41, p < 0.01) with breakfast carbohydrate intake. Conclusions: Both PPG and FPG contribute to hyperglycemia, with PPG playing a larger role in patients with better glycemic control, especially after breakfast. Targeting PPG may be crucial for optimizing glucose management. [ABSTRACT FROM AUTHOR]- Published
- 2024
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30. Development of thresholds and a visualization tool for use of a blood test in routine clinical dementia practice.
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Verberk, Inge M. W., Jutte, Jolien, Kingma, Maurice Y., Vigneswaran, Sinthujah, Gouda, Mariam M. T. E. E., van Engelen, Marie‐Paule, Alcolea, Daniel, Arranz, Javier, Fortea, Juan, Lleó, Alberto, Chevalier, Claire, Marizzoni, Moira, van de Giessen, Elsmarieke M., Lemstra, Afina W., Pijnenburg, Yolande A. L., van der Flier, Wiesje M., den Braber, Anouk, Wilson, David, Schut, Martijn C., and van Harten, Argonde C.
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- 2024
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31. The Early Perfusion Image Is Useful to Support the Visual Interpretation of Brain Amyloid-PET With 18F-Flutemetamol in Borderline Cases.
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Mathies, Franziska L., Heeman, Fiona, Jelle Visser, Pieter, den Braber, Anouk, Yaqub, Maqsood, Klutmann, Susanne, Schöll, Michael, van de Giessen, Elsmarieke, Collij, Lyduine E., and Buchert, Ralph
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- 2024
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32. NAAR MEER DIALOGISCH WERKEN IN TIJDEN VAN CRISES. EEN PLEIDOOI VANUIT OPLEIDINGEN SOCIAAL WERK
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Collin den Braber, Kristel Driessens, and Leonie le Sage
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dialogisch werken, covid-19, opleidingen sociaal werk, crisismanagement, democratisch sociaal werk. ,Sociology (General) ,HM401-1281 - Abstract
Op 10 juni 2021, meer dan een jaar na de uitbraak van COVID-19 in Europa, heeft de redactie van het Journal of Social Intervention een panelgesprek georganiseerd over de lessen die opleidingen sociaal werk trekken uit de coronacrisis. Studenten, docenten en leidinggevenden van sociaal werk opleidingen in Nederland en Vlaanderen blikten in dit gesprek kritisch terug op de ontwikkelingen in de opleidingen in deze bijzondere tijden en keken hoopvol vooruit naar wat we hieruit kunnen leren voor de toekomst. De snelle omschakeling naar digitaal onderwijs, de zorg voor de kwaliteit van het onderwijs en het welzijn van de studenten werden positief gewaardeerd. Maar in tijden van crisismanagement verliest men de essentie van het sociaal werk soms uit het oog: het belang van fysieke contacten en nabijheid, en vooral de democratische processen van co-creatie van opleiding, professionele praktijk en samenleving. Het dialogisch werken als eigenheid en kracht van het sociaal werk is volgens de panelleden te weinig geprofileerd in deze crisistijden. Die specifieke bijdrage van het sociaal werk zichtbaar maken, is een aandachtspunt voor de toekomst.
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- 2021
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33. An ex vivo tumor fragment platform to dissect response to PD-1 blockade in cancer
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Voabil, Paula, de Bruijn, Marjolein, Roelofsen, Lisanne M., Hendriks, Sanne H., Brokamp, Simone, van den Braber, Marlous, Broeks, Annegien, Sanders, Joyce, Herzig, Petra, Zippelius, Alfred, Blank, Christian, Hartemink, Koen J., Monkhorst, Kim, Haanen, John B.A.G., Schumacher, Ton N., and Thommen, Daniela S.
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Oncology, Experimental ,Tumors -- Models -- Care and treatment -- Patient outcomes ,Organs, Culture of -- Usage ,Immune response -- Health aspects -- Research ,Immunotherapy -- Patient outcomes ,Cancer -- Research ,Biological sciences ,Health - Abstract
Inhibitors of the PD-1-PD-L1 axis have been approved as therapy for many human cancers. In spite of the evidence for their widespread clinical activity, little is known about the immunological alterations that occur in human cancer tissue after PD-1 blockade. We developed and employed a patient-derived tumor fragment platform to dissect the early immunological response of human tumor tissue to ex vivo PD-1 blockade. We observed that the capacity of immune cells to be reactivated ex vivo was predictive of clinical response, and perturbation analyses identified tumor-resident T cells as a key component of this immunological response. In addition, through combined analysis of baseline properties and immune response capacity, we identified a new subgroup of infiltrated tumors that lacks the capacity to respond to PD-1 blockade. Finally, the baseline presence of tertiary lymphoid structures and their components correlated with the capacity of cancers to undergo intratumoral immune cell reactivation. An ex vivo platform of patient-derived tumor fragments enables the assessment of intratumoral immune reactivation after PD-1 blockade that is predictive of clinical outcomes in patients with cancer., Author(s): Paula Voabil [sup.1] , Marjolein de Bruijn [sup.2] , Lisanne M. Roelofsen [sup.2] , Sanne H. Hendriks [sup.2] [sup.7] , Simone Brokamp [sup.2] , Marlous van den Braber [sup.2] [...]
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- 2021
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34. Indifferent to difference? Understanding the unequal impacts of farming technologies among smallholders. A review
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Thuijsman, Eva S., den Braber, Harmen J., Andersson, Jens A., Descheemaeker, Katrien, Baudron, Frédéric, López-Ridaura, Santiago, Vanlauwe, Bernard, and Giller, Ken E.
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- 2022
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35. Novel genetic loci associated with hippocampal volume.
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Hibar, Derrek P, Adams, Hieab HH, Jahanshad, Neda, Chauhan, Ganesh, Stein, Jason L, Hofer, Edith, Renteria, Miguel E, Bis, Joshua C, Arias-Vasquez, Alejandro, Ikram, M Kamran, Desrivières, Sylvane, Vernooij, Meike W, Abramovic, Lucija, Alhusaini, Saud, Amin, Najaf, Andersson, Micael, Arfanakis, Konstantinos, Aribisala, Benjamin S, Armstrong, Nicola J, Athanasiu, Lavinia, Axelsson, Tomas, Beecham, Ashley H, Beiser, Alexa, Bernard, Manon, Blanton, Susan H, Bohlken, Marc M, Boks, Marco P, Bralten, Janita, Brickman, Adam M, Carmichael, Owen, Chakravarty, M Mallar, Chen, Qiang, Ching, Christopher RK, Chouraki, Vincent, Cuellar-Partida, Gabriel, Crivello, Fabrice, Den Braber, Anouk, Doan, Nhat Trung, Ehrlich, Stefan, Giddaluru, Sudheer, Goldman, Aaron L, Gottesman, Rebecca F, Grimm, Oliver, Griswold, Michael E, Guadalupe, Tulio, Gutman, Boris A, Hass, Johanna, Haukvik, Unn K, Hoehn, David, Holmes, Avram J, Hoogman, Martine, Janowitz, Deborah, Jia, Tianye, Jørgensen, Kjetil N, Karbalai, Nazanin, Kasperaviciute, Dalia, Kim, Sungeun, Klein, Marieke, Kraemer, Bernd, Lee, Phil H, Liewald, David CM, Lopez, Lorna M, Luciano, Michelle, Macare, Christine, Marquand, Andre F, Matarin, Mar, Mather, Karen A, Mattheisen, Manuel, McKay, David R, Milaneschi, Yuri, Muñoz Maniega, Susana, Nho, Kwangsik, Nugent, Allison C, Nyquist, Paul, Loohuis, Loes M Olde, Oosterlaan, Jaap, Papmeyer, Martina, Pirpamer, Lukas, Pütz, Benno, Ramasamy, Adaikalavan, Richards, Jennifer S, Risacher, Shannon L, Roiz-Santiañez, Roberto, Rommelse, Nanda, Ropele, Stefan, Rose, Emma J, Royle, Natalie A, Rundek, Tatjana, Sämann, Philipp G, Saremi, Arvin, Satizabal, Claudia L, Schmaal, Lianne, Schork, Andrew J, Shen, Li, Shin, Jean, Shumskaya, Elena, Smith, Albert V, Sprooten, Emma, Strike, Lachlan T, and Teumer, Alexander
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Hippocampus ,Humans ,Alzheimer Disease ,Genetic Predisposition to Disease ,Protein-Serine-Threonine Kinases ,Glycoproteins ,Microtubule-Associated Proteins ,Nerve Tissue Proteins ,Organ Size ,Cohort Studies ,Adolescent ,Adult ,Aged ,Aged ,80 and over ,Middle Aged ,Child ,Female ,Male ,Genome-Wide Association Study ,Young Adult ,Methionine Sulfoxide Reductases ,Genetic Loci ,Dipeptidyl Peptidase 4 ,Human Genome ,Aging ,Brain Disorders ,Clinical Research ,Acquired Cognitive Impairment ,Neurodegenerative ,Dementia ,Neurosciences ,Prevention ,Genetics ,Alzheimer's Disease ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Mental Health ,2.1 Biological and endogenous factors ,Mental health ,Neurological - Abstract
The hippocampal formation is a brain structure integrally involved in episodic memory, spatial navigation, cognition and stress responsiveness. Structural abnormalities in hippocampal volume and shape are found in several common neuropsychiatric disorders. To identify the genetic underpinnings of hippocampal structure here we perform a genome-wide association study (GWAS) of 33,536 individuals and discover six independent loci significantly associated with hippocampal volume, four of them novel. Of the novel loci, three lie within genes (ASTN2, DPP4 and MAST4) and one is found 200 kb upstream of SHH. A hippocampal subfield analysis shows that a locus within the MSRB3 gene shows evidence of a localized effect along the dentate gyrus, subiculum, CA1 and fissure. Further, we show that genetic variants associated with decreased hippocampal volume are also associated with increased risk for Alzheimer's disease (rg=-0.155). Our findings suggest novel biological pathways through which human genetic variation influences hippocampal volume and risk for neuropsychiatric illness.
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- 2017
36. Efficacy of metformin versus sulfonylurea derivative in HNF4A-MODY
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Nicole Oosterom, Niala den Braber, and Gozewijn D Laverman
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Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
This study compares the effects of metformin, sulfonylurea derivative (SU) and no treatment in HNF4A-MODY on glycemic control. In two patients with HNF4A-MODY, we changed the existing metformin treatment to SU derivative. The effect on the glycemic control was registered with a Freestyle Libre Flash glucose monitoring device. Each treatment period had a duration of 2 consecutive weeks, and in between, an intermediate period without medication. Data from the first 2 days after changing medications were excluded. We calculated time in range (TIR), and differences in the mean glucose level were tested with a one-way ANOVA test. The 24-h average glucose levels were significantly lower with either metformin (7.7 mmol/L; P < 0.001 and 6.3 mmol/L; P < 0.001) or gliclazide (7.6 mmol/L; P < 0.001 and 5.8 mmol/L; P < 0.001) compared to no treatment (9.4 and 8.9 mmol/L). The TIR with metformin or gliclazide was higher than without treatment (patient 1: 87 and 83 vs 61% and patient 2: 83 and 93 vs 67%). Treatment with either metformin or gliclazide effectively decreases blood glucose, rendering both drugs appropriate for treating HNF4A-MODY.
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- 2022
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37. The immunological landscape of peripheral blood in glioblastoma patients and immunological consequences of age and dexamethasone treatment
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Dusoswa, Sophie A., Verhoeff, Jan, van Asten, Saskia, Lübbers, Joyce, van den Braber, Marlous, Peters, Sophie, Abeln, Sanne, Crommentuijn, Matheus H.W., Wesseling, Pieter, Vandertop, William Peter, Twisk, Jos W.R., Würdinger, Thomas, Noske, David, van Kooyk, Yvette, Garcia-Vallejo, Juan J., Dusoswa, Sophie A., Verhoeff, Jan, van Asten, Saskia, Lübbers, Joyce, van den Braber, Marlous, Peters, Sophie, Abeln, Sanne, Crommentuijn, Matheus H.W., Wesseling, Pieter, Vandertop, William Peter, Twisk, Jos W.R., Würdinger, Thomas, Noske, David, van Kooyk, Yvette, and Garcia-Vallejo, Juan J.
- Abstract
Background: Glioblastomas manipulate the immune system both locally and systemically, yet, glioblastoma-associated changes in peripheral blood immune composition are poorly studied. Age and dexamethasone administration in glioblastoma patients have been hypothesized to limit the effectiveness of immunotherapy, but their effects remain unclear. We compared peripheral blood immune composition in patients with different types of brain tumor to determine the influence of age, dexamethasone treatment, and tumor volume. Methods: High-dimensional mass cytometry was used to characterise peripheral blood mononuclear cells of 169 patients with glioblastoma, lower grade astrocytoma, metastases and meningioma. We used blood from medically-refractory epilepsy patients and healthy controls as control groups. Immune phenotyping was performed using FlowSOM and t-SNE analysis in R followed by supervised annotation of the resulting clusters. We conducted multiple linear regression analysis between intracranial pathology and cell type abundance, corrected for clinical variables. We tested correlations between cell type abundance and survival with Cox-regression analyses. Results: Glioblastoma patients had significantly fewer naive CD4+ T cells, but higher percentages of mature NK cells than controls. Decreases of naive CD8+ T cells and alternative monocytes and an increase of memory B cells in glioblastoma patients were influenced by age and dexamethasone treatment, and only memory B cells by tumor volume. Progression free survival was associated with percentages of CD4+ regulatory T cells and double negative T cells. Conclusion: High-dimensional mass cytometry of peripheral blood in patients with different types of intracranial tumor provides insight into the relation between intracranial pathology and peripheral immune status. Wide immunosuppression associated with age and pre-operative dexamethasone treatment provide further evidence for their deleterious effects on treatment wi
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- 2024
38. The immunological landscape of peripheral blood in glioblastoma patients and immunological consequences of age and dexamethasone treatment
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Sub AI Technology for Life, AI Technology for Life, Dusoswa, Sophie A., Verhoeff, Jan, van Asten, Saskia, Lübbers, Joyce, van den Braber, Marlous, Peters, Sophie, Abeln, Sanne, Crommentuijn, Matheus H.W., Wesseling, Pieter, Vandertop, William Peter, Twisk, Jos W.R., Würdinger, Thomas, Noske, David, van Kooyk, Yvette, Garcia-Vallejo, Juan J., Sub AI Technology for Life, AI Technology for Life, Dusoswa, Sophie A., Verhoeff, Jan, van Asten, Saskia, Lübbers, Joyce, van den Braber, Marlous, Peters, Sophie, Abeln, Sanne, Crommentuijn, Matheus H.W., Wesseling, Pieter, Vandertop, William Peter, Twisk, Jos W.R., Würdinger, Thomas, Noske, David, van Kooyk, Yvette, and Garcia-Vallejo, Juan J.
- Published
- 2024
39. Even low levels of tree cover improve dietary quality in West Africa
- Author
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den Braber, Bowy, Hall, Charlotte, Brandt, Martin, Reiner, Florian, Mugabowindekwe, Maurice, Rasmussen, Laura Vang, den Braber, Bowy, Hall, Charlotte, Brandt, Martin, Reiner, Florian, Mugabowindekwe, Maurice, and Rasmussen, Laura Vang
- Abstract
Forests are attracting attention as a promising avenue to provide nutritious and “free” food without damaging the environment. Yet, we lack knowledge on the extent to which this holds in areas with sparse tree cover, such as in West Africa. This is largely due to the fact that existing methods are poorly designed to quantify tree cover in drylands. In this study, we estimate how various levels of tree cover across West Africa affect children’s (aged 12–59 months) consumption of vitamin A–rich foods. We do so by combining detailed tree cover estimates based on PlanetScope imagery (3 m resolution) with Demographic Health Survey data from >15,000 households. We find that the probability of consuming vitamin A–rich foods increases from 0.45 to 0.53 with an increase in tree cover from the median value of 8.8 to 16.8% (which is the tree cover level at which the predicted probability of consuming vitamin A–rich foods is the highest). Moreover, we observe that the effects of tree cover vary across poverty levels and ecoregions. The poor are more likely than the non-poor to consume vitamin A–rich foods at low levels of tree cover in the lowland forest-savanna ecoregions, whereas the difference between poor and non-poor is less pronounced in the Sahel-Sudan. These results highlight the importance of trees and forests in sustainable food system transformation, even in areas with sparse tree cover.
- Published
- 2024
40. Situering: de capabilitybenadering als inspiratie en houvast voor het sociale domein
- Author
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Tirions, Michel, Blok, Willem, den Braber, Collin, Tirions, Michel, Blok, Willem, and den Braber, Collin
- Published
- 2018
- Full Text
- View/download PDF
41. Kwaliteit van leven en de grondslagen van de capabilitybenadering
- Author
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Jansen, Erik, den Braber, Collin, Tirions, Michel, Tirions, Michel, Blok, Willem, and den Braber, Collin
- Published
- 2018
- Full Text
- View/download PDF
42. Slotwoord. De capabilitybenadering als eigentijds kompas voor sociale professionals
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den Braber, Collin, Beernink, Janny, Brummel, Annica, Blok, Willem, Tirions, Michel, Tirions, Michel, Blok, Willem, and den Braber, Collin
- Published
- 2018
- Full Text
- View/download PDF
43. Menselijk welzijn en vrijheid : Een kennismaking met de capabilitybenadering voor het sociale domein
- Author
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Tirions, Michel, den Braber, Collin, Tirions, Michel, Blok, Willem, and den Braber, Collin
- Published
- 2018
- Full Text
- View/download PDF
44. Intestinal hypomotility in systemic sclerosis: a histological study into the sequence of events
- Author
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den Braber-Ymker, M., Vonk, M. C., Grünberg, K., Lammens, M., and Nagtegaal, I. D.
- Published
- 2021
- Full Text
- View/download PDF
45. Mathematics in an Interdisciplinary STEM Course (NLT) in The Netherlands
- Author
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den Braber, Nelleke, Krüger, Jenneke, Mazereeuw, Marco, Kuiper, Wilmad, Kaiser, Gabriele, Editor-in-Chief, Doig, Brian, editor, Williams, Julian, editor, Swanson, David, editor, Borromeo Ferri, Rita, editor, and Drake, Pat, editor
- Published
- 2019
- Full Text
- View/download PDF
46. In vivo tau pathology is associated with synaptic loss and altered synaptic function
- Author
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Emma M. Coomans, Deborah N. Schoonhoven, Hayel Tuncel, Sander C. J. Verfaillie, Emma E. Wolters, Ronald Boellaard, Rik Ossenkoppele, Anouk den Braber, Wiep Scheper, Patrick Schober, Steven P. Sweeney, J. Michael Ryan, Robert C. Schuit, Albert D. Windhorst, Frederik Barkhof, Philip Scheltens, Sandeep S. V. Golla, Arjan Hillebrand, Alida A. Gouw, and Bart N. M. van Berckel
- Subjects
Alzheimer ,Tau ,Synaptic density ,Synaptic function ,PET ,MEG ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background The mechanism of synaptic loss in Alzheimer’s disease is poorly understood and may be associated with tau pathology. In this combined positron emission tomography (PET) and magnetoencephalography (MEG) study, we aimed to investigate spatial associations between regional tau pathology ([18F]flortaucipir PET), synaptic density (synaptic vesicle 2A [11C]UCB-J PET) and synaptic function (MEG) in Alzheimer’s disease. Methods Seven amyloid-positive Alzheimer’s disease subjects from the Amsterdam Dementia Cohort underwent dynamic 130-min [18F]flortaucipir PET, dynamic 60-min [11C]UCB-J PET with arterial sampling and 2 × 5-min resting-state MEG measurement. [18F]flortaucipir- and [11C]UCB-J-specific binding (binding potential, BPND) and MEG spectral measures (relative delta, theta and alpha power; broadband power; and peak frequency) were assessed in cortical brain regions of interest. Associations between regional [18F]flortaucipir BPND, [11C]UCB-J BPND and MEG spectral measures were assessed using Spearman correlations and generalized estimating equation models. Results Across subjects, higher regional [18F]flortaucipir uptake was associated with lower [11C]UCB-J uptake. Within subjects, the association between [11C]UCB-J and [18F]flortaucipir depended on within-subject neocortical tau load; negative associations were observed when neocortical tau load was high, gradually changing into opposite patterns with decreasing neocortical tau burden. Both higher [18F]flortaucipir and lower [11C]UCB-J uptake were associated with altered synaptic function, indicative of slowing of oscillatory activity, most pronounced in the occipital lobe. Conclusions These results indicate that in Alzheimer’s disease, tau pathology is closely associated with reduced synaptic density and synaptic dysfunction.
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- 2021
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47. Multimodal single-cell profiling reveals cancer crosstalk between macrophages and stromal cells in poor prognostic cholangiocarcinoma patients
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Heij, Lara, primary, Hayat, Sikander, additional, Reichel, Konrad, additional, Maryam, Sidrah, additional, O’Rourke, Colm J., additional, Tan, Xiuxiang, additional, van den Braber, Marlous, additional, Verhoeff, Jan, additional, Halder, Maurice, additional, Peisker, Fabian, additional, Wiltberger, Georg, additional, Bednarsch, Jan, additional, Heise, Daniel, additional, Deierl, Julia Campello, additional, Lang, Sven A., additional, Ulmer, Florian, additional, Luedde, Tom, additional, Dahl, Edgar, additional, Jonigk, Danny, additional, Nolting, Jochen, additional, Sivakumar, Shivan, additional, Siveke, Jens, additional, Rocha, Flavio G., additional, Baba, Hideo A., additional, Andersen, Jesper B., additional, Garcia Vallejo, Juan J., additional, Kramann, Rafael, additional, and Neumann, Ulf, additional
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- 2024
- Full Text
- View/download PDF
48. Even low levels of tree cover improve dietary quality in West Africa
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den Braber, Bowy, primary, Hall, Charlotte, additional, Brandt, Martin, additional, Reiner, Florian, additional, Mugabowindekwe, Maurice, additional, and Rasmussen, Laura Vang, additional
- Published
- 2024
- Full Text
- View/download PDF
49. The immunological landscape of peripheral blood in glioblastoma patients and immunological consequences of age and dexamethasone treatment
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Dusoswa, Sophie A., primary, Verhoeff, Jan, additional, van Asten, Saskia, additional, Lübbers, Joyce, additional, van den Braber, Marlous, additional, Peters, Sophie, additional, Abeln, Sanne, additional, Crommentuijn, Matheus H.W., additional, Wesseling, Pieter, additional, Vandertop, William Peter, additional, Twisk, Jos W. R., additional, Würdinger, Thomas, additional, Noske, David, additional, van Kooyk, Yvette, additional, and Garcia-Vallejo, Juan J., additional
- Published
- 2024
- Full Text
- View/download PDF
50. Investigating chromosomal instability in long-term survivors with glioblastoma and grade 4 astrocytoma
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Spoor, Jochem K. H., primary, den Braber, May, additional, Dirven, Clemens M. F., additional, Pennycuick, Adam, additional, Bartkova, Jirina, additional, Bartek, Jiri, additional, van Dis, Vera, additional, van den Bosch, Thierry P. P., additional, Leenstra, Sieger, additional, and Venkatesan, Subramanian, additional
- Published
- 2024
- Full Text
- View/download PDF
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