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329 results on '"de Vries, Franciska T."'

1. Heritable microbiome variation is correlated with source environment in locally adapted maize varieties

Author

He, Xiaoming, Wang, Danning, Jiang, Yong, Li, Meng, Delgado-Baquerizo, Manuel, McLaughlin, Chloee, Marcon, Caroline, Guo, Li, Baer, Marcel, Moya, Yudelsy A. T., von Wirén, Nicolaus, Deichmann, Marion, Schaaf, Gabriel, Piepho, Hans-Peter, Yang, Zhikai, Yang, Jinliang, Yim, Bunlong, Smalla, Kornelia, Goormachtig, Sofie, de Vries, Franciska T., Hüging, Hubert, Baer, Mareike, Sawers, Ruairidh J. H., Reif, Jochen C., Hochholdinger, Frank, Chen, Xinping, and Yu, Peng

Published
2024
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2. A slow-fast trait continuum at the whole community level in relation to land-use intensification

Author

Neyret, Margot, Le Provost, Gaëtane, Boesing, Andrea Larissa, Schneider, Florian D., Baulechner, Dennis, Bergmann, Joana, de Vries, Franciska T., Fiore-Donno, Anna Maria, Geisen, Stefan, Goldmann, Kezia, Merges, Anna, Saifutdinov, Ruslan A., Simons, Nadja K., Tobias, Joseph A., Zaitsev, Andrey S., Gossner, Martin M., Jung, Kirsten, Kandeler, Ellen, Krauss, Jochen, Penone, Caterina, Schloter, Michael, Schulz, Stefanie, Staab, Michael, Wolters, Volkmar, Apostolakis, Antonios, Birkhofer, Klaus, Boch, Steffen, Boeddinghaus, Runa S., Bolliger, Ralph, Bonkowski, Michael, Buscot, François, Dumack, Kenneth, Fischer, Markus, Gan, Huei Ying, Heinze, Johannes, Hölzel, Norbert, John, Katharina, Klaus, Valentin H., Kleinebecker, Till, Marhan, Sven, Müller, Jörg, Renner, Swen C., Rillig, Matthias C., Schenk, Noëlle V., Schöning, Ingo, Schrumpf, Marion, Seibold, Sebastian, Socher, Stephanie A., Solly, Emily F., Teuscher, Miriam, van Kleunen, Mark, Wubet, Tesfaye, and Manning, Peter

Published
2024
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4. The global spectrum of plant form and function: enhanced species-level trait dataset.

Author

Díaz, Sandra, Kattge, Jens, Cornelissen, Johannes HC, Wright, Ian J, Lavorel, Sandra, Dray, Stéphane, Reu, Björn, Kleyer, Michael, Wirth, Christian, Prentice, I Colin, Garnier, Eric, Bönisch, Gerhard, Westoby, Mark, Poorter, Hendrik, Reich, Peter B, Moles, Angela T, Dickie, John, Zanne, Amy E, Chave, Jérôme, Wright, S Joseph, Sheremetiev, Serge N, Jactel, Hervé, Baraloto, Christopher, Cerabolini, Bruno EL, Pierce, Simon, Shipley, Bill, Casanoves, Fernando, Joswig, Julia S, Günther, Angela, Falczuk, Valeria, Rüger, Nadja, Mahecha, Miguel D, Gorné, Lucas D, Amiaud, Bernard, Atkin, Owen K, Bahn, Michael, Baldocchi, Dennis, Beckmann, Michael, Blonder, Benjamin, Bond, William, Bond-Lamberty, Ben, Brown, Kerry, Burrascano, Sabina, Byun, Chaeho, Campetella, Giandiego, Cavender-Bares, Jeannine, Chapin, F Stuart, Choat, Brendan, Coomes, David Anthony, Cornwell, William K, Craine, Joseph, Craven, Dylan, Dainese, Matteo, de Araujo, Alessandro Carioca, de Vries, Franciska T, Domingues, Tomas Ferreira, Enquist, Brian J, Fagúndez, Jaime, Fang, Jingyun, Fernández-Méndez, Fernando, Fernandez-Piedade, Maria T, Ford, Henry, Forey, Estelle, Freschet, Gregoire T, Gachet, Sophie, Gallagher, Rachael, Green, Walton, Guerin, Greg R, Gutiérrez, Alvaro G, Harrison, Sandy P, Hattingh, Wesley Neil, He, Tianhua, Hickler, Thomas, Higgins, Steven I, Higuchi, Pedro, Ilic, Jugo, Jackson, Robert B, Jalili, Adel, Jansen, Steven, Koike, Fumito, König, Christian, Kraft, Nathan, Kramer, Koen, Kreft, Holger, Kühn, Ingolf, Kurokawa, Hiroko, Lamb, Eric G, Laughlin, Daniel C, Leishman, Michelle, Lewis, Simon, Louault, Frédérique, Malhado, Ana CM, Manning, Peter, Meir, Patrick, Mencuccini, Maurizio, Messier, Julie, Miller, Regis, Minden, Vanessa, Molofsky, Jane, and Montgomery, Rebecca

Abstract

Here we provide the 'Global Spectrum of Plant Form and Function Dataset', containing species mean values for six vascular plant traits. Together, these traits -plant height, stem specific density, leaf area, leaf mass per area, leaf nitrogen content per dry mass, and diaspore (seed or spore) mass - define the primary axes of variation in plant form and function. The dataset is based on ca. 1 million trait records received via the TRY database (representing ca. 2,500 original publications) and additional unpublished data. It provides 92,159 species mean values for the six traits, covering 46,047 species. The data are complemented by higher-level taxonomic classification and six categorical traits (woodiness, growth form, succulence, adaptation to terrestrial or aquatic habitats, nutrition type and leaf type). Data quality management is based on a probabilistic approach combined with comprehensive validation against expert knowledge and external information. Intense data acquisition and thorough quality control produced the largest and, to our knowledge, most accurate compilation of empirically observed vascular plant species mean traits to date.

Published
2022

9. Detecting macroecological patterns in bacterial communities across independent studies of global soils.

Author

Ramirez, Kelly S, Knight, Christopher G, de Hollander, Mattias, Brearley, Francis Q, Constantinides, Bede, Cotton, Anne, Creer, Si, Crowther, Thomas W, Davison, John, Delgado-Baquerizo, Manuel, Dorrepaal, Ellen, Elliott, David R, Fox, Graeme, Griffiths, Robert I, Hale, Chris, Hartman, Kyle, Houlden, Ashley, Jones, David L, Krab, Eveline J, Maestre, Fernando T, McGuire, Krista L, Monteux, Sylvain, Orr, Caroline H, van der Putten, Wim H, Roberts, Ian S, Robinson, David A, Rocca, Jennifer D, Rowntree, Jennifer, Schlaeppi, Klaus, Shepherd, Matthew, Singh, Brajesh K, Straathof, Angela L, Bhatnagar, Jennifer M, Thion, Cécile, van der Heijden, Marcel GA, and de Vries, Franciska T

Subjects
Bacteria, DNA, Bacterial, RNA, Ribosomal, 16S, Soil, Ecology, Soil Microbiology, Ecosystem, Biodiversity, Phylogeny, Bacterial Physiological Phenomena, Microbial Interactions, High-Throughput Nucleotide Sequencing, Microbiota, Machine Learning
Abstract

The emergence of high-throughput DNA sequencing methods provides unprecedented opportunities to further unravel bacterial biodiversity and its worldwide role from human health to ecosystem functioning. However, despite the abundance of sequencing studies, combining data from multiple individual studies to address macroecological questions of bacterial diversity remains methodically challenging and plagued with biases. Here, using a machine-learning approach that accounts for differences among studies and complex interactions among taxa, we merge 30 independent bacterial data sets comprising 1,998 soil samples from 21 countries. Whereas previous meta-analysis efforts have focused on bacterial diversity measures or abundances of major taxa, we show that disparate amplicon sequence data can be combined at the taxonomy-based level to assess bacterial community structure. We find that rarer taxa are more important for structuring soil communities than abundant taxa, and that these rarer taxa are better predictors of community structure than environmental factors, which are often confounded across studies. We conclude that combining data from independent studies can be used to explore bacterial community dynamics, identify potential 'indicator' taxa with an important role in structuring communities, and propose hypotheses on the factors that shape bacterial biogeography that have been overlooked in the past.

Published
2018

10. Mapping local and global variability in plant trait distributions

Author

Butler, Ethan E, Datta, Abhirup, Flores-Moreno, Habacuc, Chen, Ming, Wythers, Kirk R, Fazayeli, Farideh, Banerjee, Arindam, Atkin, Owen K, Kattge, Jens, Amiaud, Bernard, Blonder, Benjamin, Boenisch, Gerhard, Bond-Lamberty, Ben, Brown, Kerry A, Byun, Chaeho, Campetella, Giandiego, Cerabolini, Bruno EL, Cornelissen, Johannes HC, Craine, Joseph M, Craven, Dylan, de Vries, Franciska T, Díaz, Sandra, Domingues, Tomas F, Forey, Estelle, González-Melo, Andrés, Gross, Nicolas, Han, Wenxuan, Hattingh, Wesley N, Hickler, Thomas, Jansen, Steven, Kramer, Koen, Kraft, Nathan JB, Kurokawa, Hiroko, Laughlin, Daniel C, Meir, Patrick, Minden, Vanessa, Niinemets, Ülo, Onoda, Yusuke, Peñuelas, Josep, Read, Quentin, Sack, Lawren, Schamp, Brandon, Soudzilovskaia, Nadejda A, Spasojevic, Marko J, Sosinski, Enio, Thornton, Peter E, Valladares, Fernando, van Bodegom, Peter M, Williams, Mathew, Wirth, Christian, and Reich, Peter B

Subjects
Ecosystem, Environment, Geography, Models, Statistical, Plant Dispersal, Plants, Quantitative Trait, Heritable, Spatial Analysis, plant traits, Bayesian modeling, spatial statistics, global, climate
Abstract

Our ability to understand and predict the response of ecosystems to a changing environment depends on quantifying vegetation functional diversity. However, representing this diversity at the global scale is challenging. Typically, in Earth system models, characterization of plant diversity has been limited to grouping related species into plant functional types (PFTs), with all trait variation in a PFT collapsed into a single mean value that is applied globally. Using the largest global plant trait database and state of the art Bayesian modeling, we created fine-grained global maps of plant trait distributions that can be applied to Earth system models. Focusing on a set of plant traits closely coupled to photosynthesis and foliar respiration-specific leaf area (SLA) and dry mass-based concentrations of leaf nitrogen ([Formula: see text]) and phosphorus ([Formula: see text]), we characterize how traits vary within and among over 50,000 [Formula: see text]-km cells across the entire vegetated land surface. We do this in several ways-without defining the PFT of each grid cell and using 4 or 14 PFTs; each model's predictions are evaluated against out-of-sample data. This endeavor advances prior trait mapping by generating global maps that preserve variability across scales by using modern Bayesian spatial statistical modeling in combination with a database over three times larger than that in previous analyses. Our maps reveal that the most diverse grid cells possess trait variability close to the range of global PFT means.

Published
2017

11. Review article: Drought as a continuum: memory effects in interlinked hydrological, ecological, and social systems

Author

Van Loon, Anne F., primary, Kchouk, Sarra, additional, Matanó, Alessia, additional, Tootoonchi, Faranak, additional, Alvarez-Garreton, Camila, additional, Hassaballah, Khalid E. A., additional, Wu, Minchao, additional, Wens, Marthe L. K., additional, Shyrokaya, Anastasiya, additional, Ridolfi, Elena, additional, Biella, Riccardo, additional, Nagavciuc, Viorica, additional, Barendrecht, Marlies H., additional, Bastos, Ana, additional, Cavalcante, Louise, additional, de Vries, Franciska T., additional, Garcia, Margaret, additional, Mård, Johanna, additional, Streefkerk, Ileen N., additional, Teutschbein, Claudia, additional, Tootoonchi, Roshanak, additional, Weesie, Ruben, additional, Aich, Valentin, additional, Boisier, Juan P., additional, Di Baldassarre, Giuliano, additional, Du, Yiheng, additional, Galleguillos, Mauricio, additional, Garreaud, René, additional, Ionita, Monica, additional, Khatami, Sina, additional, Koehler, Johanna K. L., additional, Luce, Charles H., additional, Maskey, Shreedhar, additional, Mendoza, Heidi D., additional, Mwangi, Moses N., additional, Pechlivanidis, Ilias G., additional, Ribeiro Neto, Germano G., additional, Roy, Tirthankar, additional, Stefanski, Robert, additional, Trambauer, Patricia, additional, Koebele, Elizabeth A., additional, Vico, Giulia, additional, and Werner, Micha, additional

Published
2024
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14. Vegetation type, not the legacy of warming, modifies the response of microbial functional genes and greenhouse gas fluxes to drought in oro-arctic and alpine regions

Author

Fry, Ellen L, primary, Ashworth, Deborah, additional, Allen, Kimberley A J, additional, Chardon, Nathalie Isabelle, additional, Rixen, Christian, additional, Björkman, Mats P, additional, Björk, Robert G, additional, Stålhandske, Thomas, additional, Molau, Mathias, additional, Locke-King, Brady, additional, Cantillon, Isabelle, additional, McDonald, Catriona, additional, Liu, Hongwei, additional, De Vries, Franciska T, additional, Ostle, Nick J, additional, Singh, Brajesh K, additional, and Bardgett, Richard D, additional

Published
2023
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16. Global data on earthworm abundance, biomass, diversity and corresponding environmental properties

Author

Phillips, Helen R. P., Bach, Elizabeth M., Bartz, Marie L. C., Bennett, Joanne M., Beugnon, Rémy, Briones, Maria J. I., Brown, George G., Ferlian, Olga, Gongalsky, Konstantin B., Guerra, Carlos A., König-Ries, Birgitta, Krebs, Julia J., Orgiazzi, Alberto, Ramirez, Kelly S., Russell, David J., Schwarz, Benjamin, Wall, Diana H., Brose, Ulrich, Decaëns, Thibaud, Lavelle, Patrick, Loreau, Michel, Mathieu, Jérôme, Mulder, Christian, van der Putten, Wim H., Rillig, Matthias C., Thakur, Madhav P., de Vries, Franciska T., Wardle, David A., Ammer, Christian, Ammer, Sabine, Arai, Miwa, Ayuke, Fredrick O., Baker, Geoff H., Baretta, Dilmar, Barkusky, Dietmar, Beauséjour, Robin, Bedano, Jose C., Birkhofer, Klaus, Blanchart, Eric, Blossey, Bernd, Bolger, Thomas, Bradley, Robert L., Brossard, Michel, Burtis, James C., Capowiez, Yvan, Cavagnaro, Timothy R., Choi, Amy, Clause, Julia, Cluzeau, Daniel, Coors, Anja, Crotty, Felicity V., Crumsey, Jasmine M., Dávalos, Andrea, Cosín, Darío J. Díaz, Dobson, Annise M., Domínguez, Anahí, Duhour, Andrés Esteban, van Eekeren, Nick, Emmerling, Christoph, Falco, Liliana B., Fernández, Rosa, Fonte, Steven J., Fragoso, Carlos, Franco, André L. C., Fusilero, Abegail, Geraskina, Anna P., Gholami, Shaieste, González, Grizelle, Gundale, Michael J., López, Mónica Gutiérrez, Hackenberger, Branimir K., Hackenberger, Davorka K., Hernández, Luis M., Hirth, Jeff R., Hishi, Takuo, Holdsworth, Andrew R., Holmstrup, Martin, Hopfensperger, Kristine N., Lwanga, Esperanza Huerta, Huhta, Veikko, Hurisso, Tunsisa T., Iannone, III, Basil V., Iordache, Madalina, Irmler, Ulrich, Ivask, Mari, Jesús, Juan B., Johnson-Maynard, Jodi L., Joschko, Monika, Kaneko, Nobuhiro, Kanianska, Radoslava, Keith, Aidan M., Kernecker, Maria L., Koné, Armand W., Kooch, Yahya, Kukkonen, Sanna T., Lalthanzara, H., Lammel, Daniel R., Lebedev, Iurii M., Le Cadre, Edith, Lincoln, Noa K., López-Hernández, Danilo, Loss, Scott R., Marichal, Raphael, Matula, Radim, Minamiya, Yukio, Moos, Jan Hendrik, Moreno, Gerardo, Morón-Ríos, Alejandro, Motohiro, Hasegawa, Muys, Bart, Neirynck, Johan, Norgrove, Lindsey, Novo, Marta, Nuutinen, Visa, Nuzzo, Victoria, Mujeeb Rahman, P., Pansu, Johan, Paudel, Shishir, Pérès, Guénola, Pérez-Camacho, Lorenzo, Ponge, Jean-François, Prietzel, Jörg, Rapoport, Irina B., Rashid, Muhammad Imtiaz, Rebollo, Salvador, Rodríguez, Miguel Á., Roth, Alexander M., Rousseau, Guillaume X., Rozen, Anna, Sayad, Ehsan, van Schaik, Loes, Scharenbroch, Bryant, Schirrmann, Michael, Schmidt, Olaf, Schröder, Boris, Seeber, Julia, Shashkov, Maxim P., Singh, Jaswinder, Smith, Sandy M., Steinwandter, Michael, Szlavecz, Katalin, Talavera, José Antonio, Trigo, Dolores, Tsukamoto, Jiro, Uribe-López, Sheila, de Valença, Anne W., Virto, Iñigo, Wackett, Adrian A., Warren, Matthew W., Webster, Emily R., Wehr, Nathaniel H., Whalen, Joann K., Wironen, Michael B., Wolters, Volkmar, Wu, Pengfei, Zenkova, Irina V., Zhang, Weixin, Cameron, Erin K., and Eisenhauer, Nico

Published
2021
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18. Role of soil fungi in nitrogen cycling

Author

de Vries, Franciska T., Bloem, Jaap, and Hoffland, Ellis

Subjects
Nutrient Management for Optimal Productivity and Sustainability, nitrogen, fungi, soil, leaching, denitrification
Abstract

It is often suggested but so far not substantiated that soils with a higher fungal/bacterial (F/B) ratio retain nitrogen better. If this were true, it would be wise for farmers who want to reduce the environmental impact to increase this F/B ratio. We did field studies on experimental plots and on commercial farms and found that lower fertilizer rates led to higher fungal biomass in grassland soils. In incubation studies with intact soil columns we showed that soil with a higher fungal biomass had lower leaching and denitrification rates because of lower mineralization and nitrification rates while maintaining production levels.

Published
2009

20. Vegetation type, not the legacy of warming, modifies the response of microbial functional genes and greenhouse gas fluxes to drought in oro-arctic and alpine regions

Author

Fry, Ellen L, Ashworth, Deborah, Allen, Kimberley A J, Chardon, Nathalie Isabelle, Rixen, Christian, Björkman, Mats P, Björk, Robert G, Stålhandske, Thomas, Molau, Mathias, Locke-King, Brady, Cantillon, Isabelle, McDonald, Catriona, Liu, Hongwei, De Vries, Franciska T, Ostle, Nick J, Singh, Brajesh K, Bardgett, Richard D, Fry, Ellen L, Ashworth, Deborah, Allen, Kimberley A J, Chardon, Nathalie Isabelle, Rixen, Christian, Björkman, Mats P, Björk, Robert G, Stålhandske, Thomas, Molau, Mathias, Locke-King, Brady, Cantillon, Isabelle, McDonald, Catriona, Liu, Hongwei, De Vries, Franciska T, Ostle, Nick J, Singh, Brajesh K, and Bardgett, Richard D

Abstract

Climate warming and summer droughts alter soil microbial activity, affecting greenhouse gas (GHG) emissions in arctic and alpine regions. However, the long-term effects of warming, and implications for future microbial resilience, are poorly understood. Using one alpine and three arctic soils subjected to in situ long-term experimental warming, we simulated drought in laboratory incubations to test how microbial functional-gene abundance affects fluxes in three GHGs: carbon dioxide, methane, and nitrous oxide. We found that responses of functional gene abundances to drought and warming are strongly associated with vegetation type and soil carbon. Our sites ranged from a wet, forb dominated, soil carbon-rich systems to a drier, soil carbon-poor alpine site. Resilience of functional gene abundances, and in turn methane and carbon dioxide fluxes, was lower in the wetter, carbon-rich systems. However, we did not detect an effect of drought or warming on nitrous oxide fluxes. All gene-GHG relationships were modified by vegetation type, with stronger effects being observed in wetter, forb-rich soils. These results suggest that impacts of warming and drought on GHG emissions are linked to a complex set of microbial gene abundances and may be habitat-specific.

Published
2023

21. Heritable maize microbiomes contribute to local adaptation and host stress resilience

Author

He, Xiaoming, primary, Wang, Danning, additional, Jiang, Yong, additional, Li, Meng, additional, Delgado-Baquerizo, Manuel, additional, McLaughlin, Chloee, additional, Marcon, Caroline, additional, Guo, Li, additional, Baer, Marcel, additional, Moya, Yudelsy A.T., additional, Wirén, Nicolaus von, additional, Deichmann, Marion, additional, Schaaf, Gabriel, additional, Piepho, Hans-Peter, additional, Yang, Zhikai, additional, Yang, Jinliang, additional, Yim, Bunlong, additional, Smalla, Kornelia, additional, Goormachtig, Sofie, additional, de Vries, Franciska T., additional, Hüging, Hubert, additional, Sawers, Ruairidh J. H., additional, Reif, Jochen C., additional, Hochholdinger, Frank, additional, Chen, Xinping, additional, and Yu, Peng, additional

Published
2023
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25. Frontiers in soil ecology—Insights from the World Biodiversity Forum 2022

Author

Eisenhauer, Nico, primary, Bender, S. Franz, additional, Calderón‐Sanou, Irene, additional, de Vries, Franciska T., additional, Lembrechts, Jonas J., additional, Thuiller, Wilfried, additional, Wall, Diana H., additional, Zeiss, Romy, additional, Bahram, Mohammad, additional, Beugnon, Rémy, additional, Burton, Victoria J., additional, Crowther, Thomas W., additional, Delgado‐Baquerizo, Manuel, additional, Geisen, Stefan, additional, Kardol, Paul, additional, Krashevska, Valentyna, additional, Martínez‐Muñoz, Carlos A., additional, Patoine, Guillaume, additional, Seeber, Julia, additional, Soudzilovskaia, Nadejda A., additional, Steinwandter, Michael, additional, Sünnemann, Marie, additional, Sun, Xin, additional, van der Heijden, Marcel G. A., additional, Guerra, Carlos A., additional, and Potapov, Anton, additional

Published
2022
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28. The biogeography of relative abundance of soil fungi versus bacteria in surface topsoil

Author

Yu, Kailiang, primary, van den Hoogen, Johan, additional, Wang, Zhiqiang, additional, Averill, Colin, additional, Routh, Devin, additional, Smith, Gabriel Reuben, additional, Drenovsky, Rebecca E., additional, Scow, Kate M., additional, Mo, Fei, additional, Waldrop, Mark P., additional, Yang, Yuanhe, additional, Tang, Weize, additional, De Vries, Franciska T., additional, Bardgett, Richard D., additional, Manning, Peter, additional, Bastida, Felipe, additional, Baer, Sara G., additional, Bach, Elizabeth M., additional, García, Carlos, additional, Wang, Qingkui, additional, Ma, Linna, additional, Chen, Baodong, additional, He, Xianjing, additional, Teurlincx, Sven, additional, Heijboer, Amber, additional, Bradley, James A., additional, and Crowther, Thomas W., additional

Published
2022
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31. Soil bacterial networks are less stable under drought than fungal networks

Author

de Vries, Franciska T., Griffiths, Rob I., Bailey, Mark, Craig, Hayley, Girlanda, Mariangela, Gweon, Hyun Soon, Hallin, Sara, Kaisermann, Aurore, Keith, Aidan M., Kretzschmar, Marina, Lemanceau, Philippe, Lumini, Erica, Mason, Kelly E., Oliver, Anna, Ostle, Nick, Prosser, James I., Thion, Cecile, Thomson, Bruce, and Bardgett, Richard D.

Published
2018
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32. Drought Legacy in Sub-Seasonal Vegetation State and Sensitivity to Climate Over the Northern Hemisphere

Author

Wu, Minchao, Manzoni, Stefano, Vico, Giulia, Bastos, Ana, de Vries, Franciska T., Messori, Gabriele, Wu, Minchao, Manzoni, Stefano, Vico, Giulia, Bastos, Ana, de Vries, Franciska T., and Messori, Gabriele

Abstract

Droughts affect ecosystems at multiple time scales, but their sub-seasonal legacy effects on vegetation activity remain unclear. Combining the satellite-based enhanced vegetation index MODIS EVI with a novel location-specific definition of the growing season, we quantify drought impacts on sub-seasonal vegetation activity and the subsequent recovery in the Northern Hemisphere. Drought legacy effects are quantified as changes in post-drought greenness and sensitivity to climate. We find that greenness losses under severe drought are partially compensated by a ∼+5% greening within 2–6 growing-season months following the droughts, both in woody and herbaceous vegetation but at different timings. In addition, post-drought sensitivity of herbaceous vegetation to hydrological conditions increases noticeably at high latitudes compared with the local normal conditions, regardless of the choice of drought time scales. In general, the legacy effects on sensitivity are larger in herbaceous vegetation than in woody vegetation.

Published
2022
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33. Explanations for nitrogen decline

Author

Olff, Han, Aerts, Rien, Bobbink, Roland, Cornelissen, J. Hans C., Erisman, Jan Willem, Galloway, James N., Stevens, Carly J., Sutton, Mark A., de Vries, Franciska T., Wamelink, G. W. Wieger, Wardle, David A., Olff, Han, Aerts, Rien, Bobbink, Roland, Cornelissen, J. Hans C., Erisman, Jan Willem, Galloway, James N., Stevens, Carly J., Sutton, Mark A., de Vries, Franciska T., Wamelink, G. W. Wieger, and Wardle, David A.

Published
2022

34. Explanations for nitrogen decline [Letter]

Author

Olff, Han, Aerts, Rien, Bobbink, Roland, Cornelissen, J. Hans C., Erisman, Jan Willem, Galloway, James N., Stevens, Carly J., Sutton, Mark A., de Vries, Franciska T., Wamelink, G.W. Wieger, Wardle, David A., Olff, Han, Aerts, Rien, Bobbink, Roland, Cornelissen, J. Hans C., Erisman, Jan Willem, Galloway, James N., Stevens, Carly J., Sutton, Mark A., de Vries, Franciska T., Wamelink, G.W. Wieger, and Wardle, David A.

Published
2022

35. Ga niet wéér twijfel zaaien: aan die stikstofdoelen valt echt niet te ontkomen

Author

Olff, Han, Aerts, Rien, Bakker, E.S., Berendse, Frank, Berg, Matty P., Beunen, Raoul, Biesmeijer, Koos, Bobbink, R., Both, Christiaan, Candel, Jeroen, Cornelissen, Johannes H. C., De Deyn, Gerlinde, Van Dobben, W.H., Erisman, J. W., van der Heijde, Tjisse, Howison, Ruth A., Jansen, Patrick A., van de Koppel, Johan, de Kroon, Hans, Kros, Hans, Lamers, Leon P. M., Piersma, Theunis, van der Putten, W.H., Roelofs, J., Smolders, Alfons J. P., Smit, Christian, Soons, Merel, Tittonell, P., Turnhout, Sander, Visser, M.E., Vet, L.E.M., de Vries, Wim, De Vries, Franciska T., Wamelink, G. W.Wieger, Wassen, Martin, van Wezel, Annemarie, Olff, Han, Aerts, Rien, Bakker, E.S., Berendse, Frank, Berg, Matty P., Beunen, Raoul, Biesmeijer, Koos, Bobbink, R., Both, Christiaan, Candel, Jeroen, Cornelissen, Johannes H. C., De Deyn, Gerlinde, Van Dobben, W.H., Erisman, J. W., van der Heijde, Tjisse, Howison, Ruth A., Jansen, Patrick A., van de Koppel, Johan, de Kroon, Hans, Kros, Hans, Lamers, Leon P. M., Piersma, Theunis, van der Putten, W.H., Roelofs, J., Smolders, Alfons J. P., Smit, Christian, Soons, Merel, Tittonell, P., Turnhout, Sander, Visser, M.E., Vet, L.E.M., de Vries, Wim, De Vries, Franciska T., Wamelink, G. W.Wieger, Wassen, Martin, and van Wezel, Annemarie

Abstract

Steeds opnieuw klinkt in de Kamer en in de media twijfel aan de wetenschappelijke basis van het stikstofplan. Han Olff, Wim de Vries en 34 andere wetenschappers* leggen nog maar eens uit hoe het zit.

Published
2022

36. Frontiers in soil ecology—Insights from the World Biodiversity Forum 2022

Author

Eisenhauer, Nico, Bender, Franz, Calderón‐Sanou, Irene, de Vries, Franciska T., Lembrechts, Jonas J., Thuiller, Wilfried, Wall, Diana H., Zeiss, Romy, Bahram, Mohammad, Beugnon, Rémy, Burton, Victoria J., Crowther, Thomas W., Delgado‐Baquerizo, Manuel, Geisen, Stefan, Kardol, Paul, Krashevska, Valentyna, Martínez‐Muñoz, Carlos A., Patoine, Guillaume, Seeber, Julia, Soudzilovskaia, Nadejda A., Steinwandter, Michael, Sünnemann, Marie, Sun, Xin, van der Heijden, Marcel G.A., Guerra, Carlos A., Potapov, Anton, Eisenhauer, Nico, Bender, Franz, Calderón‐Sanou, Irene, de Vries, Franciska T., Lembrechts, Jonas J., Thuiller, Wilfried, Wall, Diana H., Zeiss, Romy, Bahram, Mohammad, Beugnon, Rémy, Burton, Victoria J., Crowther, Thomas W., Delgado‐Baquerizo, Manuel, Geisen, Stefan, Kardol, Paul, Krashevska, Valentyna, Martínez‐Muñoz, Carlos A., Patoine, Guillaume, Seeber, Julia, Soudzilovskaia, Nadejda A., Steinwandter, Michael, Sünnemann, Marie, Sun, Xin, van der Heijden, Marcel G.A., Guerra, Carlos A., and Potapov, Anton

Abstract

Global change is affecting soil biodiversity and functioning across all terrestrial ecosystems. Still, much is unknown about how soil biodiversity and function will change in the future in response to simultaneous alterations in climate and land use, as well as other environmental drivers. It is crucial to understand the direct, indirect and interactive effects of global change drivers on soil communities and ecosystems across environmental contexts, not only today but also in the near future. This is particularly relevant for international efforts to tackle climate change like the Paris Agreement, and considering the failure to achieve the 2020 biodiversity targets, especially the target of halting soil degradation. Here, we outline the main frontiers related to soil ecology that were presented and discussed at the thematic sessions of the World Biodiversity Forum 2022in Davos, Switzerland. We highlight multiple frontiers of knowledge associated with data integration, causal inference, soil biodiversity and function scenarios, critical soil biodiversity facets, underrepresented drivers, global collaboration, knowledge application and transdisciplinarity, as well as policy and public communication. These identified research priorities are not only of immediate interest to the scientific community but may also be considered in research priority programmes and calls for funding.

Published
2022

37. Data and code from Semchenko et al. (2022) New Phytologist 10.1111/nph.18118

Author

Semchenko, Marina, Barry, Kathryn E., de Vries, Franciska T., Mommer, Liesje, Moora, Mari, Maciá-Vicente, Jose G., Semchenko, Marina, Barry, Kathryn E., de Vries, Franciska T., Mommer, Liesje, Moora, Mari, and Maciá-Vicente, Jose G.

Abstract

Data and code used in Semchenko M, Barry KE, de Vries FT, Mommer L, Maciá-Vicente JG (2022) Deciphering the role of specialist and generalist plant–microbial interactions as drivers of plant–soil feedback. New Phytologist, 10.1111/nph.18118 for the analysis of host ranges across plant-associated fungal and oomycete guilds., Data and code used in Semchenko M, Barry KE, de Vries FT, Mommer L, Maciá-Vicente JG (2022) Deciphering the role of specialist and generalist plant–microbial interactions as drivers of plant–soil feedback. New Phytologist, 10.1111/nph.18118 for the analysis of host ranges across plant-associated fungal and oomycete guilds.

Published
2022

38. Deciphering the role of specialist and generalist plant–microbial interactions as drivers of plant–soil feedback

Author

Semchenko, Marina, Barry, Kathryn E., de Vries, Franciska T., Mommer, Liesje, Moora, Mari, Maciá-Vicente, Jose G., Semchenko, Marina, Barry, Kathryn E., de Vries, Franciska T., Mommer, Liesje, Moora, Mari, and Maciá-Vicente, Jose G.

Abstract

Feedback between plants and soil microbial communities can be a powerful driver of vegetation dynamics. Plants elicit changes in the soil microbiome that either promote or suppress conspecifics at the same location, thereby regulating population density-dependence and species co-existence. Such effects are often attributed to the accumulation of host-specific antagonistic or beneficial microbiota in the rhizosphere. However, the identity and host-specificity of the microbial taxa involved are rarely empirically assessed. Here we review the evidence for host-specificity in plant-associated microbes and propose that specific plant–soil feedbacks can also be driven by generalists. We outline the potential mechanisms by which generalist microbial pathogens, mutualists and decomposers can generate differential effects on plant hosts and synthesize existing evidence to predict these effects as a function of plant investments into defence, microbial mutualists and dispersal. Importantly, the capacity of generalist microbiota to drive plant–soil feedbacks depends not only on the traits of individual plants but also on the phylogenetic and functional diversity of plant communities. Identifying factors that promote specialization or generalism in plant–microbial interactions and thereby modulate the impact of microbiota on plant performance will advance our understanding of the mechanisms underlying plant–soil feedback and the ways it contributes to plant co-existence.

Published
2022

39. Frontiers in soil ecology—Insights from the World Biodiversity Forum 2022

Author

Eisenhauer, Nico; https://orcid.org/0000-0002-0371-6720, Bender, S Franz; https://orcid.org/0000-0003-0895-2228, Calderón‐Sanou, Irene; https://orcid.org/0000-0003-4608-1187, de Vries, Franciska T; https://orcid.org/0000-0002-6822-8883, Lembrechts, Jonas J; https://orcid.org/0000-0002-1933-0750, Thuiller, Wilfried; https://orcid.org/0000-0002-5388-5274, Wall, Diana H; https://orcid.org/0000-0002-9466-5235, Zeiss, Romy; https://orcid.org/0000-0001-8862-9185, Bahram, Mohammad, Beugnon, Rémy; https://orcid.org/0000-0003-2457-5688, Burton, Victoria J; https://orcid.org/0000-0003-0122-3292, Crowther, Thomas W; https://orcid.org/0000-0001-5674-8913, Delgado‐Baquerizo, Manuel; https://orcid.org/0000-0002-6499-576X, Geisen, Stefan; https://orcid.org/0000-0003-0734-727X, Kardol, Paul; https://orcid.org/0000-0001-7065-3435, Krashevska, Valentyna; https://orcid.org/0000-0002-9765-5833, Martínez‐Muñoz, Carlos A, Patoine, Guillaume; https://orcid.org/0000-0002-3748-6644, Seeber, Julia; https://orcid.org/0000-0003-0189-7377, Soudzilovskaia, Nadejda A; https://orcid.org/0000-0002-9584-2109, Steinwandter, Michael; https://orcid.org/0000-0001-8545-6047, Sünnemann, Marie; https://orcid.org/0000-0001-5385-258X, Sun, Xin; https://orcid.org/0000-0002-2782-649X, van der Heijden, Marcel G A; https://orcid.org/0000-0001-7040-1924, Guerra, Carlos A; https://orcid.org/0000-0003-4917-2105, Potapov, Anton; https://orcid.org/0000-0002-4456-1710, Eisenhauer, Nico; https://orcid.org/0000-0002-0371-6720, Bender, S Franz; https://orcid.org/0000-0003-0895-2228, Calderón‐Sanou, Irene; https://orcid.org/0000-0003-4608-1187, de Vries, Franciska T; https://orcid.org/0000-0002-6822-8883, Lembrechts, Jonas J; https://orcid.org/0000-0002-1933-0750, Thuiller, Wilfried; https://orcid.org/0000-0002-5388-5274, Wall, Diana H; https://orcid.org/0000-0002-9466-5235, Zeiss, Romy; https://orcid.org/0000-0001-8862-9185, Bahram, Mohammad, Beugnon, Rémy; https://orcid.org/0000-0003-2457-5688, Burton, Victoria J; https://orcid.org/0000-0003-0122-3292, Crowther, Thomas W; https://orcid.org/0000-0001-5674-8913, Delgado‐Baquerizo, Manuel; https://orcid.org/0000-0002-6499-576X, Geisen, Stefan; https://orcid.org/0000-0003-0734-727X, Kardol, Paul; https://orcid.org/0000-0001-7065-3435, Krashevska, Valentyna; https://orcid.org/0000-0002-9765-5833, Martínez‐Muñoz, Carlos A, Patoine, Guillaume; https://orcid.org/0000-0002-3748-6644, Seeber, Julia; https://orcid.org/0000-0003-0189-7377, Soudzilovskaia, Nadejda A; https://orcid.org/0000-0002-9584-2109, Steinwandter, Michael; https://orcid.org/0000-0001-8545-6047, Sünnemann, Marie; https://orcid.org/0000-0001-5385-258X, Sun, Xin; https://orcid.org/0000-0002-2782-649X, van der Heijden, Marcel G A; https://orcid.org/0000-0001-7040-1924, Guerra, Carlos A; https://orcid.org/0000-0003-4917-2105, and Potapov, Anton; https://orcid.org/0000-0002-4456-1710

Abstract

Global change is affecting soil biodiversity and functioning across all terrestrial ecosystems. Still, much is unknown about how soil biodiversity and function will change in the future in response to simultaneous alterations in climate and land use, as well as other environmental drivers. It is crucial to understand the direct, indirect and interactive effects of global change drivers on soil communities and ecosystems across environmental contexts, not only today but also in the near future. This is particularly relevant for international efforts to tackle climate change like the Paris Agreement, and considering the failure to achieve the 2020 biodiversity targets, especially the target of halting soil degradation. Here, we outline the main frontiers related to soil ecology that were presented and discussed at the thematic sessions of the World Biodiversity Forum 2022 in Davos, Switzerland. We highlight multiple frontiers of knowledge associated with data integration, causal inference, soil biodiversity and function scenarios, critical soil biodiversity facets, underrepresented drivers, global collaboration, knowledge application and transdisciplinarity, as well as policy and public communication. These identified research priorities are not only of immediate interest to the scientific community but may also be considered in research priority programmes and calls for funding.

Published
2022

40. Explanations for nitrogen decline

Author

Olff, Han, primary, Aerts, Rien, additional, Bobbink, Roland, additional, Cornelissen, J. Hans C., additional, Erisman, Jan Willem, additional, Galloway, James N., additional, Stevens, Carly J., additional, Sutton, Mark A., additional, de Vries, Franciska T., additional, Wamelink, G. W. Wieger, additional, and Wardle, David A., additional

Published
2022
Full Text
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41. Supplementary material to "The biogeography of relative abundance of soil fungi and bacteria in top surface soil"

Author

Yu, Kailiang, primary, van den Hoogen, Johan, additional, Wang, Zhiqiang, additional, Averill, Colin, additional, Routh, Devin, additional, Smith, Gabriel R., additional, Drenovsky, Rebecca E., additional, Scow, Kate M., additional, Mo, Fei, additional, Waldrop, Mark P., additional, Yang, Yuanhe, additional, Tang, Weize, additional, De Vries, Franciska T., additional, Bardgett, Richard D., additional, Manning, Peter, additional, Bastida, Felipe, additional, Baer, Sara G., additional, Bach, Elizabeth M., additional, García, Carlos, additional, Wang, Qingkui, additional, Ma, Linna, additional, Chen, Baodong, additional, He, Xianjing, additional, Teurlincx, Sven, additional, Heijboer, Amber, additional, Bradley, James A., additional, and Crowther, Thomas W., additional

Published
2022
Full Text
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42. The biogeography of relative abundance of soil fungi and bacteria in top surface soil

Author

Yu, Kailiang, primary, van den Hoogen, Johan, additional, Wang, Zhiqiang, additional, Averill, Colin, additional, Routh, Devin, additional, Smith, Gabriel R., additional, Drenovsky, Rebecca E., additional, Scow, Kate M., additional, Mo, Fei, additional, Waldrop, Mark P., additional, Yang, Yuanhe, additional, Tang, Weize, additional, De Vries, Franciska T., additional, Bardgett, Richard D., additional, Manning, Peter, additional, Bastida, Felipe, additional, Baer, Sara G., additional, Bach, Elizabeth M., additional, García, Carlos, additional, Wang, Qingkui, additional, Ma, Linna, additional, Chen, Baodong, additional, He, Xianjing, additional, Teurlincx, Sven, additional, Heijboer, Amber, additional, Bradley, James A., additional, and Crowther, Thomas W., additional

Published
2022
Full Text
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43. Soil food web properties explain ecosystem services across European land use systems

Author

de Vries, Franciska T., Thébault, Elisa, Liiri, Mira, Birkhofer, Klaus, Tsiafouli, Maria A., Bjørnlund, Lisa, Jørgensen, Helene Bracht, Brady, Mark Vincent, Christensen, Søren, de Ruiter, Peter C., d'Hertefeldt, Tina, Frouz, Jan, Hedlund, Katarina, Hemerik, Lia, Hol, W. H. Gera, Hotes, Stefan, Mortimer, Simon R., Setälä, Heikki, Sgardelis, Stefanos P., Uteseny, Karoline, van der Putten, Wim H., Wolters, Volkmar, and Bardgett, Richard D.

Published
2013

50. Global data on earthworm abundance, biomass, diversity and corresponding environmental properties

Author

Phillips, Helen R.P., Bach, Elizabeth M., Bartz, Marie L.C., Bennett, Joanne, Beugnon, Rémy, Briones, Maria J. I., Brown, George G., Ferlian, Olga, Gongalsky, Konstantin B., Guerra, Carlos A., König-Ries, Birgitta, Krebs, Julia, Orgiazzi, Alberto, Ramirez, Kelly S., Russell, David, Schwarz, Benjamin, Wall, Diana H., Brose, Ulrich, Decaëns, Thibaud, Lavelle, Patrick, Loreau, Michel, Mathieu, Jérôme, Mulder, Christian, van der Putten, Wim H., Rillig, Matthias C., Thakur, Madhav P., de Vries, Franciska T., Wardle, David A., Ammer, Christian, Ammer, Sabine, Arai, Miwa, Ayuke, Fredrick O., Baker, Geoff H., Baretta, Dilmar, Barkusky, Dietmar, Beauséjour, Robin, Bedano, José Camilo, Birkhofer, Klaus, Blanchart, Eric, Blossey, Bernd, Bolger, Thomas, Bradley, Robert L., Brossard, Michel, Burtis, James C., Capowiez, Yvan, Cavagnaro, Timothy R., Choi, Amy, Clause, Julia, Cluzeau, Daniel, Coors, Anja, Crotty, Felicity V., Crumsey, Jasmine M., Dávalos, Andrea, Diaz Cosin, Darío J., Dobson, Annise M., Dominguez, Anahí, Duhour, Andrés Esteban, van Eekeren, Nick, Emmerling, Christoph, Falco, Liliana B., Fernández, Rosa, Fonte, Steven J., Fragoso, Carlos, Franco, André L.C., Fusilero, Abegail T., Geraskina, Anna P., Gholami, Shaieste, González, Grizelle, Gundale, Michael J., Gutiérrez López, Mónica, Hackenberger, Branimir K., Hackenberger, Davorka K., Hernández, Luis M., Hirth, Jeff R., Hishi, Takuo, Holdsworth, Andrew R., Holmstrup, Martin, Hopfensperger, Kristine N., Huerta Lwanga, Esperanza, Huhta, Veikko, Hurisso, Tunsisa T., Iannone III, Basil V., Iordache, Madalina, Irmler, Ulrich, Ivask, Mari, Jesús, Juan B., Johnson-Maynard, Jodi L., Joschko, Monika, Kaneko, Nobuhiro, Kanianska, Radoslava, Keith, Aidan M., Kernecker, Maria L., Koné, Armand W., Kooch, Yahya, Kukkonen, Sanna T., Lalthanzara, H., Lammel, Daniel R., Lebedev, Iurii M., Le Cadre, Edith, Lincoln, Noa K., López-Hernández, Danilo, Loss, Scott R., Marichal, Raphaël, et al., Phillips, Helen R.P., Bach, Elizabeth M., Bartz, Marie L.C., Bennett, Joanne, Beugnon, Rémy, Briones, Maria J. I., Brown, George G., Ferlian, Olga, Gongalsky, Konstantin B., Guerra, Carlos A., König-Ries, Birgitta, Krebs, Julia, Orgiazzi, Alberto, Ramirez, Kelly S., Russell, David, Schwarz, Benjamin, Wall, Diana H., Brose, Ulrich, Decaëns, Thibaud, Lavelle, Patrick, Loreau, Michel, Mathieu, Jérôme, Mulder, Christian, van der Putten, Wim H., Rillig, Matthias C., Thakur, Madhav P., de Vries, Franciska T., Wardle, David A., Ammer, Christian, Ammer, Sabine, Arai, Miwa, Ayuke, Fredrick O., Baker, Geoff H., Baretta, Dilmar, Barkusky, Dietmar, Beauséjour, Robin, Bedano, José Camilo, Birkhofer, Klaus, Blanchart, Eric, Blossey, Bernd, Bolger, Thomas, Bradley, Robert L., Brossard, Michel, Burtis, James C., Capowiez, Yvan, Cavagnaro, Timothy R., Choi, Amy, Clause, Julia, Cluzeau, Daniel, Coors, Anja, Crotty, Felicity V., Crumsey, Jasmine M., Dávalos, Andrea, Diaz Cosin, Darío J., Dobson, Annise M., Dominguez, Anahí, Duhour, Andrés Esteban, van Eekeren, Nick, Emmerling, Christoph, Falco, Liliana B., Fernández, Rosa, Fonte, Steven J., Fragoso, Carlos, Franco, André L.C., Fusilero, Abegail T., Geraskina, Anna P., Gholami, Shaieste, González, Grizelle, Gundale, Michael J., Gutiérrez López, Mónica, Hackenberger, Branimir K., Hackenberger, Davorka K., Hernández, Luis M., Hirth, Jeff R., Hishi, Takuo, Holdsworth, Andrew R., Holmstrup, Martin, Hopfensperger, Kristine N., Huerta Lwanga, Esperanza, Huhta, Veikko, Hurisso, Tunsisa T., Iannone III, Basil V., Iordache, Madalina, Irmler, Ulrich, Ivask, Mari, Jesús, Juan B., Johnson-Maynard, Jodi L., Joschko, Monika, Kaneko, Nobuhiro, Kanianska, Radoslava, Keith, Aidan M., Kernecker, Maria L., Koné, Armand W., Kooch, Yahya, Kukkonen, Sanna T., Lalthanzara, H., Lammel, Daniel R., Lebedev, Iurii M., Le Cadre, Edith, Lincoln, Noa K., López-Hernández, Danilo, Loss, Scott R., Marichal, Raphaël, and et al.

Abstract

Earthworms are an important soil taxon as ecosystem engineers, providing a variety of crucial ecosystem functions and services. Little is known about their diversity and distribution at large spatial scales, despite the availability of considerable amounts of local-scale data. Earthworm diversity data, obtained from the primary literature or provided directly by authors, were collated with information on site locations, including coordinates, habitat cover, and soil properties. Datasets were required, at a minimum, to include abundance or biomass of earthworms at a site. Where possible, site-level species lists were included, as well as the abundance and biomass of individual species and ecological groups. This global dataset contains 10,840 sites, with 184 species, from 60 countries and all continents except Antarctica. The data were obtained from 182 published articles, published between 1973 and 2017, and 17 unpublished datasets. Amalgamating data into a single global database will assist researchers in investigating and answering a wide variety of pressing questions, for example, jointly assessing aboveground and belowground biodiversity distributions and drivers of biodiversity change.

Published
2021

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