14 results on '"da Silva-Pereira RA"'
Search Results
2. Comprehensive landscape of neutralizing antibody and cell-mediated response elicited by the 1/5 fractional dose of 17DD-YF primary vaccination in adults.
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Reis LR, Costa-Rocha IA, Abdala-Torres T, Campi-Azevedo AC, Peruhype-Magalhães V, Araújo MSS, Spezialli E, do Valle Antonelli LR, da Silva-Pereira RA, Almeida GG, Fernandes EG, Fantinato FFST, Domingues CMAS, Lemos MCF, Chieppe A, Lemos JAC, Coelho-Dos-Reis JG, de Lima SMB, de Souza Azevedo A, Schwarcz WD, Camacho LAB, de Lourdes de Sousa Maia M, de Noronha TG, Duault C, Rosenberg-Hasson Y, Teixeira-Carvalho A, Maecker HT, and Martins-Filho OA
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- Humans, Adult, Antibodies, Neutralizing, Interleukin-10, Antibodies, Viral, Tumor Necrosis Factor-alpha, CD8-Positive T-Lymphocytes, Vaccination, Yellow Fever Vaccine, Yellow Fever
- Abstract
The present study aimed at evaluating the YF-specific neutralizing antibody profile besides a multiparametric analysis of phenotypic/functional features of cell-mediated response elicited by the 1/5 fractional dose of 17DD-YF vaccine, administered as a single subcutaneous injection. The immunological parameters of each volunteer was monitored at two time points, referred as: before (Day 0) [Non-Vaccinated, NV
(D0) ] and after vaccination (Day 30-45) [Primary Vaccinees, PV(D30-45) ]. Data demonstrated high levels of neutralizing antibodies for PV(D30-45) leading to a seropositivity rate of 93%. A broad increase of systemic soluble mediators with a mixed profile was also observed for PV(D30-45) , with IFN-γ and TNF-α presenting the highest baseline fold changes. Integrative network mapping of soluble mediators showed increased correlation numbers in PV(D30-45) as compared to NV(D0) (532vs398). Moreover, PV(D30-45) exhibited increased levels of Terminal Effector (CD45RA+ CCR7- ) CD4+ and CD8+ T-cells and Non-Classical memory B-cells (IgD+ CD27+ ). Dimensionality reduction of Mass Cytometry data further support these findings. A polyfunctional cytokine profile (TNF-α/IFN-γ/IL-10/IL-17/IL-2) of T and B-cells was observed upon in vitro antigen recall. Mapping and kinetics timeline of soluble mediator signatures for PV(D30-45) further confirmed the polyfunctional profile upon long-term in vitro culture, mediated by increased levels of IFN-γ and TNF-α along with decreased production of IL-10. These findings suggest novel insights of correlates of protection elicited by the 1/5 fractional dose of 17DD-YF vaccine., (© 2024. The Author(s).)- Published
- 2024
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3. Immune response induced by standard and fractional doses of 17DD yellow fever vaccine.
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Abdala-Torres T, Campi-Azevedo AC, da Silva-Pereira RA, Dos Santos LI, Henriques PM, Costa-Rocha IA, Otta DA, Peruhype-Magalhães V, Teixeira-Carvalho A, Araújo MSS, Fernandes EG, Sato HK, Fantinato FFST, Domingues CMAS, Kallás EG, Tomiyama HTI, Lemos JAC, Coelho-Dos-Reis JG, de Lima SMB, Schwarcz WD, de Souza Azevedo A, Trindade GF, Ano Bom APD, da Silva AMV, Fernandes CB, Camacho LAB, de Sousa Maia ML, Martins-Filho OA, and do Antonelli LRDV
- Abstract
The re-emergence of yellow fever (YF) urged new mass vaccination campaigns and, in 2017, the World Health Organization approved the use of the fractional dose (FD) of the YF vaccine due to stock shortage. In an observational cross-sectional investigation, we have assessed viremia, antibodies, soluble mediators and effector and memory T and B-cells induced by primary vaccination of volunteers with FD and standard dose (SD). Similar viremia and levels of antibodies and soluble markers were induced early after immunization. However, a faster decrease in the latter was observed after SD. The FD led to a sustained expansion of helper T-cells and an increased expression of activation markers on T-cells early after vaccination. Although with different kinetics, expansion of plasma cells was induced upon SD and FD immunization. Integrative analysis reveals that FD induces a more complex network involving follicular helper T cells and B-cells than SD. Our findings substantiate that FD can replace SD inducing robust correlates of protective immune response against YF., (© 2024. The Author(s).)
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- 2024
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4. FioSchisto's expert perspective on implementing WHO guidelines for schistosomiasis control and transmission elimination in Brazil.
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Menezes CA, Montresor LC, Jangola STG, de Mattos AC, Domingues ALC, Júnior AM, Silva CCM, Barbosa CS, de Mendonça CLF, Massara CL, Fonseca CT, de Oliveira EJ, Gomes ECS, da Silva EF, Bezerra FSM, Silva-Jr FP, de Siqueira IC, Silva JRME, Heller L, Farias LP, Beck LCNH, Santos MCS, Lima MG, Mourão MM, Enk MJ, Fernandez MA, Katz N, Carvalho ODS, Parreiras PM, Neves RH, Gava SG, de Oliveira SA, Thiengo SC, Favre TC, Graeff-Teixeira C, Pieri OS, Caldeira RL, da Silva-Pereira RA, Rocha RS, and Oliveira RR
- Subjects
- Humans, Brazil epidemiology, Praziquantel, World Health Organization, Water, Schistosomiasis epidemiology, Schistosomiasis prevention & control
- Abstract
The World Health Organization (WHO) recognizes schistosomiasis as one of the Neglected Tropical Diseases targeted for global elimination in the 2030 Agenda of the Sustainable Development Goals. In Brazil, schistosomiasis mansoni is considered a public health problem, particularly prevalent among vulnerable populations living in areas with poor environmental and sanitary conditions. In 2022, the WHO published a Guideline encompassing recommendations to assist national programs in endemic countries in achieving morbidity control, eliminating schistosomiasis as a public health problem, and advancing towards interrupting transmission. The perspectives presented here, collectively prepared by members of the Oswaldo Cruz Foundation's (Fiocruz) Schistosomiasis Translational Program (FioSchisto), along with invited experts, examine the feasibility of the WHO recommendations for the Brazilian settings, providing appropriate recommendations for public health policies applicable to the epidemiological reality of Brazil, and suggests future research to address relevant issues. In Brazil, the provision of safe water and sanitation should be the key action to achieve schistosomiasis elimination goals. The agencies involved in measures implementation should act together with the Primary Care teams for planning, executing, monitoring, and evaluating actions in priority municipalities based on their epidemiological indicators. Host snails control should prioritize judicious ecological interventions at breeding sites. The Information, Education, and Communication (IEC) strategy should be associated with water and sanitation and other control actions, actively involving school community. To identify infected carriers, FioSchisto recommends a two-stage approach of immunological and molecular tests to verify transmission interruption during the intervention and beyond. Praziquantel administration should be done under medical supervision at the Primary Care level. MDA should be considered in exceptional settings, as a measure of initial attack strategy in locations presenting high endemicity, always integrated with water and sanitation, IEC, and snail control. To assist decision-making, as well as the monitoring and evaluation of strategic actions, there is a need for an Information System. FioSchisto considers this systematization essential to make investments in strategic research to support the improvement of schistosomiasis control actions. Efforts toward schistosomiasis elimination in Brazil will succeed with a paradigm shift from the vertical prescriptive framework to a community-centered approach involving intersectoral and interdisciplinary collaboration., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2023 Menezes, Montresor, Jangola, de Mattos, Domingues, Júnior, Silva, Barbosa, de Mendonça, Massara, Fonseca, de Oliveira, Gomes, da Silva, Bezerra, Silva, de Siqueira, Silva, Heller, Farias, Beck, Santos, Lima, Mourão, Enk, Fernandez, Katz, Carvalho, Parreiras, Neves, Gava, de Oliveira, Thiengo, Favre, Graeff-Teixeira, Pieri, Caldeira, da Silva-Pereira, Rocha and Oliveira.)
- Published
- 2023
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5. Longitudinal study of humoral immunity against SARS-CoV-2 of health professionals in Brazil: the impact of booster dose and reinfection on antibody dynamics.
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Franco-Luiz APM, Fernandes NMGS, Silva TBS, Bernardes WPOS, Westin MR, Santos TG, Fernandes GDR, Simões TC, Silva EFE, Gava SG, Alves BM, de Carvalho Melo M, da Silva-Pereira RA, Alves PA, and Fonseca CT
- Subjects
- Humans, SARS-CoV-2, Brazil epidemiology, Longitudinal Studies, Reinfection, Immunoglobulin G, Health Personnel, Immunoglobulin M, Immunity, Humoral, COVID-19
- Abstract
Introduction: The pandemic caused by SARS-CoV-2 has had a major impact on health systems. Vaccines have been shown to be effective in improving the clinical outcome of COVID-19, but they are not able to fully prevent infection and reinfection, especially that caused by new variants., Methods: Here, we tracked for 450 days the humoral immune response and reinfection in 52 healthcare workers from Brazil. Infection and reinfection were confirmed by RT-qPCR, while IgM and IgG antibody levels were monitored by rapid test., Results: Of the 52 participants, 19 (36%) got reinfected during the follow-up period, all presenting mild symptoms. For all participants, IgM levels dropped sharply, with over 47% of them becoming seronegative by the 60th day. For IgG, 90% of the participants became seropositive within the first 30 days of follow-up. IgG antibodies also dropped after this period reaching the lowest level on day 270 (68.5 ± 72.3, p<0.0001). Booster dose and reinfection increased the levels of both antibodies, with the interaction between them resulting in an increase in IgG levels of 130.3 arbitrary units., Conclusions: Overall, our data indicate that acquired humoral immunity declines over time and suggests that IgM and IgG antibody levels are not associated with the prevention of reinfection., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Franco-Luiz, Fernandes, Silva, Bernardes, Westin, Santos, Fernandes, Simões, Silva, Gava, Alves, de Carvalho Melo, da Silva-Pereira, Alves and Fonseca.)
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- 2023
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6. Comparison of diagnostic performance of RT-qPCR, RT-LAMP and IgM/IgG rapid tests for detection of SARS-CoV-2 among healthcare workers in Brazil.
- Author
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Bernardes WPOS, Santos TG, Fernandes NMGS, de Souza Silva TB, Westin M, Simões TC, Fernandes E Silva E, Alves BM, Molina I, de Carvalho Melo M, Monte-Neto RLD, da Silva-Pereira RA, Alves PA, and Fonseca CT
- Subjects
- Humans, COVID-19 Testing, Prospective Studies, Brazil epidemiology, Clinical Laboratory Techniques methods, Health Personnel, RNA, Immunoglobulin G, Immunoglobulin M, Sensitivity and Specificity, SARS-CoV-2 genetics, COVID-19 diagnosis
- Abstract
Background: COVID-19 has become a major public health problem after the outbreak caused by SARS-CoV-2 virus. Great efforts to contain COVID-19 transmission have been applied worldwide. In this context, accurate and fast diagnosis is essential., Methods: In this prospective study, we evaluated the clinical performance of three different RNA-based molecular tests - RT-qPCR (Charité protocol), RT-qPCR (CDC (USA) protocol) and RT-LAMP - and one rapid test for detecting anti-SARS-CoV-2 IgM and IgG antibodies., Results: Our results demonstrate that RT-qPCR using the CDC (USA) protocol is the most accurate diagnostic test among those evaluated, while oro-nasopharyngeal swabs are the most appropriate biological sample. RT-LAMP was the RNA-based molecular test with lowest sensitivity while the serological test presented the lowest sensitivity among all evaluated tests, indicating that the latter test is not a good predictor of disease in the first days after symptoms onset. Additionally, we observed higher viral load in individuals who reported more than 3 symptoms at the baseline. Nevertheless, viral load had not impacted the probability of testing positive for SARS-CoV-2., Conclusion: Our data indicates that RT-qPCR using the CDC (USA) protocol in oro-nasopharyngeal swabs samples should be the method of choice to diagnosis COVID-19., Competing Interests: Declaration of Competing Interest The authors declare that they have no conflict of interest to declare., (Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2023
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7. A review of serological tests available in Brazil for intestinal schistosomiasis diagnosis.
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Ramos LMDS, da Silva-Pereira RA, Oliveira E, Fonseca CT, and Graeff-Teixeira C
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- Humans, Antigens, Helminth, Brazil epidemiology, Enzyme-Linked Immunosorbent Assay methods, Serologic Tests, Schistosomiasis diagnosis, Schistosomiasis epidemiology, Schistosomiasis mansoni diagnosis, Schistosomiasis mansoni epidemiology
- Abstract
The World Health Organization (WHO) roadmap and recommendations for elimination of schistosomiasis were recently updated. With significant reductions in the prevalence and intensity of schistosomiasis infections worldwide, there is a need for more sensitive diagnostic methods. There are a few remaining transmission hotspots in Brazil, although low endemicity settings comprise most of the endemic localities. For the latter, serology may represent a tool for population screening which could help eliminate transmission of schistosomiasis. Here, we review serology tests currently available in Brazil from both public health and private laboratories: immunofluorescent antibody tests (IFATs) on adult worm sections and enzyme-linked immunosorbent assays (ELISAs) with soluble egg and adult worm antigens. Both in-house and commercially available tests have received less than adequate performance evaluations. Our review of immediate basic and operational research goals may help identify local adjustments that can be made to improve control interventions aimed at elimination of schistosomiasis as a public health problem.
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- 2023
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8. SmTAL-9, a Member of the Schistosoma mansoni Tegument Allergen-Like Family, Is Important for Parasite Survival and a Putative Target for Drug/Vaccine Development.
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Bernardes WPOS, Dutra ITX, da Silva-Pereira RA, Mourão MM, and Fonseca CT
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- Allergens genetics, Animals, Antibodies, Helminth, Antigens, Helminth genetics, Mice, Schistosoma mansoni, Vaccine Development, Parasites, Schistosomiasis mansoni, Vaccines
- Abstract
The tegument of Schistosoma mansoni is involved in essential functions for parasite survival and is known to stimulate immune responses in pre-clinical vaccine trials. Smtal-9, a member of the tegument-allergen-like (TAL) family, is one of the components of the tegument of schistosomula recognized by sera from immunized and protected mice. In this work, we assessed the role of Smtal-9 in parasite survival using the RNAi approach. Also, we cloned and expressed a recombinant form of Smtal-9 and evaluated its ability to induce protection in mice. Smtal-9 knockdown did not impact parasite survival in vitro , but significantly decreased schistosomula size. Additionally, significant reduction in both parasite and egg burdens were observed in mice inoculated with Smtal-9 -knockdown schistosomula. Immunization using the Smtal-9 as an antigen conferred partial protection against challenge infection. Overall, our results indicate that Smtal-9 is a candidate target for drug and/or vaccine development due to its important role in parasite biology and survival., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Bernardes, Dutra, da Silva-Pereira, Mourão and Fonseca.)
- Published
- 2022
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9. Practice-based analysis of direct posterior dental restorations performed in a public health service: Retrospective long-term survival in Brazil.
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da Silva Pereira RA, da Silva GR, Barcelos LM, Cavalcanti KGBA, Herval ÁM, Ardenghi TM, and Soares CJ
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- Brazil, Female, Humans, Male, Oral Health, Retrospective Studies, Dental Restoration Failure, Dental Restoration, Permanent
- Abstract
The aim of this retrospective study was to evaluate the survival and associated factors for the longevity of direct posterior restorations and to verify whether the geographic location of public health units could influence the long-term survival of such restorations. Data were extracted from electronic patient files of the Brazilian public oral health services. The sample comprised 2,405 class I and II restorations performed 4 to 24 years ago (mean, 8.9 years) in 351 patients (6.8 teeth/patient) across 12 public health units located in different city regions (42 professionals-55 restorations). The restoration was considered successful if it had not been repaired or replaced at the time of evaluation; failure was defined as replacement of the restoration, the need for endodontic treatment, tooth/restoration fracture or tooth extraction. Data were analyzed using the Kaplan-Meier test for restoration survival and Cox regression to evaluate the factors associated with failure. The majority of the restorations involved the use of amalgam (85%), involved a single face (70%), and were without pulp/dentin capping (85%). The overall survival rate was 95%, and the mean observation time was 8.9 years. The restoration survival was 79% (95% CI: 60.6-89.5) over 24 years, and the mean survival time was 22.2 years (95% CI: 21.9-22.6 years). The annual failure rate up to 24 years was 0.9%. After the adjustment, only the number of restored faces and the geographic location where the restoration was performed remained associated with failure of the restoration. The direct posterior restorations performed at the evaluated public health service units presented high survival rates. The restorations of people with lower access to POHS had lower survival rates. Class I restorations presented higher survival rates than class II restorations with two or more faces, regardless of the restorative material used., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
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10. Sm16, A Schistosoma mansoni Immunomodulatory Protein, Fails to Elicit a Protective Immune Response and Does Not Have an Essential Role in Parasite Survival in the Definitive Host.
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Bernardes WPOS, de Araújo JM, Carvalho GB, Alves CC, de Moura Coelho AT, Dutra ITS, Teixeira SSF, de Azambuja Ribeiro RIM, de Moraes Mourão M, da Silva-Pereira RA, and Fonseca CT
- Subjects
- Animals, Antibodies, Helminth immunology, Antigens, Helminth immunology, Base Sequence, Cytokines metabolism, Disease Models, Animal, Female, Gene Knockdown Techniques, Helminth Proteins chemistry, Helminth Proteins genetics, Immunization, Mice, Recombinant Proteins immunology, Schistosoma mansoni growth & development, Schistosomiasis mansoni genetics, Schistosomiasis mansoni prevention & control, Vaccines immunology, Helminth Proteins immunology, Host-Parasite Interactions immunology, Immunomodulation, Schistosoma mansoni immunology, Schistosomiasis mansoni immunology, Schistosomiasis mansoni parasitology
- Abstract
Sm16 is an immunomodulatory protein that seems to play a key role in the suppression of the cutaneous inflammatory response during Schistosoma mansoni penetration of the skin of definitive hosts. Therefore, Sm16 represents a potential target for protective immune responses induced by vaccination. In this work, we generated the recombinant protein rSm16 and produced polyclonal antibodies against this protein to evaluate its expression during different parasite life-cycle stages and its location on the surface of the parasite. In addition, we analyzed the immune responses elicited by immunization with rSm16 using two different vaccine formulations, as well as its ability to induce protection in Balb/c mice. In order to explore the biological function of Sm16 during the course of experimental infection, RNA interference was also employed. Our results demonstrated that Sm16 is expressed in cercaria and schistosomula and is located in the schistosomula surface. Despite humoral and cellular immune responses triggered by vaccination using rSm16 associated with either Freund's or alum adjuvants, immunized mice presented no reduction in either parasite burden or parasite egg laying. Knockdown of Sm16 gene expression in schistosomula resulted in decreased parasite size in vitro but had no effect on parasite survival or egg production in vivo . Thus, our findings demonstrate that although the vaccine formulations used in this study succeeded in activating immune responses, these failed to promote parasite elimination. Finally, we have shown that Sm16 is not vital for parasite survival in the definitive host and hence may not represent a suitable target for vaccine development., Competing Interests: The authors declare no conflict of interest., (Copyright © 2019 Wilma Patrícia de Oliveira Santos Bernardes et al.)
- Published
- 2019
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11. Corrigendum to "The Schistosoma mansoni cyclophilin a epitope 107-121 induces a protective immune response against schistosomiasis" [Mol. Immunol. 111(2019) 172-181].
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de Melo TT, Mendes MM, Alves CC, Carvalho GB, Fernandes VC, Ferreira Pimenta DL, de Moraes Mourão M, Gai F, Kalli M, Coelho A, de Azambuja Ribeiro RIM, Falcone FH, da Silva Pereira RA, and Fonseca CT
- Published
- 2019
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12. Anti-band 3 and anti-spectrin antibodies are increased in Plasmodium vivax infection and are associated with anemia.
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Mourão LC, Baptista RP, de Almeida ZB, Grynberg P, Pucci MM, Castro-Gomes T, Fontes CJF, Rathore S, Sharma YD, da Silva-Pereira RA, Bemquerer MP, and Braga ÉM
- Subjects
- Adult, Anemia immunology, Humans, Immunoglobulin G immunology, Malaria, Vivax immunology, Anemia complications, Anion Exchange Protein 1, Erythrocyte immunology, Autoantibodies immunology, Erythrocytes immunology, Malaria, Vivax complications, Plasmodium vivax immunology, Spectrin immunology
- Abstract
Clearance of non-infected red blood cells (nRBCs) is one of the main components of anemia associated with Plasmodium vivax malaria. Recently, we have shown that anemic patients with P. vivax infection had elevated levels of anti-RBCs antibodies, which could enhance in vitro phagocytosis of nRBCs and decrease their deformability. Using immunoproteomics, here we characterized erythrocytic antigens that are differentially recognized by autoantibodies from anemic and non-anemic patients with acute vivax malaria. Protein spots exclusively recognized by anemic P. vivax-infected patients were identified by mass spectrometry revealing band 3 and spectrin as the main targets. To confirm this finding, antibody responses against these specific proteins were assessed by ELISA. In addition, an inverse association between hemoglobin and anti-band 3 or anti-spectrin antibodies levels was found. Anemic patients had higher levels of IgG against both band 3 and spectrin than the non-anemic ones. To determine if these autoantibodies were elicited because of molecular mimicry, we used in silico analysis and identified P. vivax proteins that share homology with human RBC proteins such as spectrin, suggesting that infection drives autoimmune responses. These findings suggest that band 3 and spectrin are potential targets of autoantibodies that may be relevant for P. vivax malaria-associated anemia.
- Published
- 2018
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13. The new generation of conventional and bulk-fill composites do not reduce the shrinkage stress in endodontically-treated molars.
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Oliveira Schliebe LRS, Lourenço Braga SS, da Silva Pereira RA, Bicalho AA, Veríssimo C, Novais VR, Versluis A, and Soares CJ
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- Compressive Strength, Dental Stress Analysis, Elastic Modulus, Finite Element Analysis, Hardness, Humans, Materials Testing, Root Canal Therapy, Silicon Dioxide, Tensile Strength, Zirconium, Composite Resins chemistry, Dental Materials chemistry, Dental Restoration, Permanent, Molar, Tooth, Nonvital
- Abstract
Purpose: To compare flowable and regular paste bulk-fill resin composites with old and new generation conventional composites that use incremental filling techniques for direct restoration of endodontically-treated teeth., Methods: Four resin composites produced by the same company (3M-ESPE) were used: two conventional resin composites (old formulation, Z100, and new nanofilled formulation, Filtek Supreme XT); and two bulk-fill resin composites (flowable composite, Filtek Bulk-fill Flowable associated with Filtek Supreme, and regular paste, Filtek Bulk-fill Posterior). Elastic modulus (E), Vickers hardness (VH), post-gel shrinkage (Shr), diametral tensile strength (DTS) and compressive strength (CS) were determined (n= 10) and statistically analyzed using ANOVA and Tukey's test (α=0.05). Shrinkage stresses were analyzed using non-linear finite element analysis., Results: Filtek Bulk-fill flowable and Filtek Supreme XT had higher CS than Z100 and Filtek Bulk-fill Posterior. Z100 and Filtek Supreme XT had higher DTS than Filtek Bulk-fill Posterior. Filtek Bulk-fill flowable had the lowest values and Z100 the highest E and Shr. Z100 resulted in higher stresses in the enamel and in root dentin close to the pulp chamber than the other filling techniques. Filtek Bulk-fill Flowable resulted in lower stress than other resin composites., Clinical Significance: Using bulk-fill composites, especially flowable resin composite, created lower stresses in restored endodontically-treated teeth. Clinicians, when deciding for direct restoration of endodontically-treated teeth, may choose the bulk-fill composite to decrease undesirable effects of direct restoration while simplifying filling procedure., Competing Interests: The authors declared no conflict of interests. This study was supported by grants from CNPQ, FAPEMIG, and CAPES.
- Published
- 2016
14. Identification of Schistosoma mansoni microRNAs.
- Author
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Simões MC, Lee J, Djikeng A, Cerqueira GC, Zerlotini A, da Silva-Pereira RA, Dalby AR, LoVerde P, El-Sayed NM, and Oliveira G
- Subjects
- Animals, Computational Biology, Genome, Helminth genetics, MicroRNAs genetics, Schistosoma mansoni genetics
- Abstract
Background: MicroRNAs (miRNAs) constitute a class of single-stranded RNAs which play a crucial role in regulating development and controlling gene expression by targeting mRNAs and triggering either translation repression or messenger RNA (mRNA) degradation. miRNAs are widespread in eukaryotes and to date over 14,000 miRNAs have been identified by computational and experimental approaches. Several miRNAs are highly conserved across species. In Schistosoma, the full set of miRNAs and their expression patterns during development remain poorly understood. Here we report on the development and implementation of a homology-based detection strategy to search for miRNA genes in Schistosoma mansoni. In addition, we report results on the experimental detection of miRNAs by means of cDNA cloning and sequencing of size-fractionated RNA samples., Results: Homology search using the high-throughput pipeline was performed with all known miRNAs in miRBase. A total of 6,211 mature miRNAs were used as reference sequences and 110 unique S. mansoni sequences were returned by BLASTn analysis. The existing mature miRNAs that produced these hits are reported, as well as the locations of the homologous sequences in the S. mansoni genome. All BLAST hits aligned with at least 95% of the miRNA sequence, resulting in alignment lengths of 19-24 nt. Following several filtering steps, 15 potential miRNA candidates were identified using this approach. By sequencing small RNA cDNA libraries from adult worm pairs, we identified 211 novel miRNA candidates in the S. mansoni genome. Northern blot analysis was used to detect the expression of the 30 most frequent sequenced miRNAs and to compare the expression level of these miRNAs between the lung stage schistosomula and adult worm stages. Expression of 11 novel miRNAs was confirmed by northern blot analysis and some presented a stage-regulated expression pattern. Three miRNAs previously identified from S. japonicum were also present in S. mansoni., Conclusion: Evidence for the presence of miRNAs in S. mansoni is presented. The number of miRNAs detected by homology-based computational methods in S. mansoni is limited due to the lack of close relatives in the miRNA repository. In spite of this, the computational approach described here can likely be applied to the identification of pre-miRNA hairpins in other organisms. Construction and analysis of a small RNA library led to the experimental identification of 14 novel miRNAs from S. mansoni through a combination of molecular cloning, DNA sequencing and expression studies. Our results significantly expand the set of known miRNAs in multicellular parasites and provide a basis for understanding the structural and functional evolution of miRNAs in these metazoan parasites.
- Published
- 2011
- Full Text
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