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Wildlife may represent an important source of infectious diseases for humans and other wild and domestic animals. Wild ruminants can harbour and transmit Shiga toxin-producing Escherichia coli (STEC) to humans, and some strains even carry important antimicrobial resistance. In this study, 289 livers of wild roe deer, fallow deer, red deer and chamois collected in Liguria, north-west Italy, from 2019 to 2023 were analysed. Overall, 44 STEC strains were isolated from 28 samples. The characterisation of serogroups showed the presence of O104, O113, O145 and O146 serogroups, although for 28 colonies, the serogroup could not be determined. The most prevalent Shiga toxin gene in isolated strains was Stx2, and more specifically the subtype Stx2b. The other retrieved subtypes were Stx1a, Stx1c, Stx1d and Stx2g. The isolated strains generally proved to be susceptible to the tested antimicrobials. However, multi-drug resistances against highly critical antimicrobials were found in one strain isolated from a roe deer. This study highlights the importance of wildlife monitoring in the context of a "One Health" approach. [ABSTRACT FROM AUTHOR]

Pneumonia is a common disease affecting Alpine chamois. However, little is known concerning the etiological agents involved. We investigated whether Mycoplasma spp. infection occurs in Alpine chamois and describe the microscopic lesions associated with Mycoplasma-associated bronchopneumonia in this species. Lung tissues obtained from 45 chamois with gross evidence of pneumonia were analysed. The histological lesions and the presence of lungworms within the lungs were evaluated blindly. The presence of Mycoplasma spp. was assessed by immunohistochemistry (Mycoplasma bovis and Mycoplasma mycoides subsp. mycoides) and by end-point PCR. M. bovis was detected by immunohistochemistry and confirmed by PCR and sequencing in 6/45 (13%) cases, while all lungs were negative for M. mycoides subsp. mycoides. A significant association was found between the detection of M. bovis and the presence of severe lungworms infection in the examined lungs. We report for the first time M. bovis as a bacteria associated with verminous pneumonia in chamois.

Female density and distribution are dependent on resource phenology and female availability strongly influences male mating behaviour and success. When a male adopts a 'resource defence' tactic, his reproductive success depends on the location and attractiveness of his territory. Environmental factors associated with territory quality are expected to influence mating success, for example, through territory features or male–male competition. In a protected population of a mountain‐dwelling polygynous herbivore, the Alpine chamois Rupicapra r. rupicapra, we investigated the relationships among mating opportunities, some environmental variables (snow depth, topographic features and size of territories) and male intra‐sexual competition for mating. We recorded the mating behaviour and territory size of 15 GPS‐GSM radio‐tagged territorial males, during five rutting seasons (early November to early December: N = 8 individuals in 2011, N = 9 in 2012, N = 8 in 2015, N = 11 in 2016, N = 7 in 2017; 80% of them were observed for more than one mating season) and related them to snow depth and topography of territories. In ruts with deep snow cover, territorial males had smaller territories and higher number of mating opportunities than in ruts with lower snow cover. Smaller territories showed the highest values of terrain roughness, in turn with little or no snow cover in the mating season, and were visited by a greater number of females, than larger territories. Number of wins was positively influenced by snow depth and negatively related to the frequency of aggressions. The frequency of male–male aggressive interactions was greater during ruts with deep snow cover and for males with territories at higher elevations; additionally, it was negatively related to interactions won. Thus, snow depth, which influences resource distribution and female movements, is confirmed as a strong determinant of male mating opportunities and mating behaviour. [ABSTRACT FROM AUTHOR]

As an inhabitant of the Alps, chamois are exposed to significant climatic changes throughout the year and are also strongly confronted with changing forage availability. Besides horizontal and vertical migratory movements as an adaptation, it undergoes physiological transformations and dynamic changes in the ruminal microbiota. The following study used 48 chamois of different ages and genders to investigate to which extent the ingested food plants, the resulting crude nutrients in the rumen (reticulorumen) contents, and the bacterial microbiota in the rumen and their fermentation products were influenced by the changes over the seasons. Very little is known about the microbiota of wild ruminants, and many bacterial taxa could only be determined to certain taxonomic levels in this study. However, adapted microbiota reflects the significant changes in the ingested forage and the resulting crude nutrients. For some taxa, our results indicated potential functional relationships. In addition, 15 genera were identified, representing almost 90% of the relative abundance, forming the central part of the microbial community throughout the year. The successful and flexible adaptation of chamois is reflected in the chamois rumen’s nutrient and microbial profile. This is also the first study that analyzes the microbiota of the chamois using rumen samples and considers the microbiota in a seasonal comparison. [ABSTRACT FROM AUTHOR]

As climate change intensifies and demand for timber rises, forest disturbances are increasing. Disturbances in forests cause an abrupt loss in canopy cover and increase resource availability on the ground, which can have manifold effects on the habitat quality of forest‐dwelling species. One pathway through which disturbances influence habitat quality is by creating edges within forests. Disturbance‐created edges differ from edges to other land cover types in that they are transient, that is, they persist only for a limited period of time until canopy closes again. While the effects of permanent edges are well‐studied in ecology, the role of transient edges remains largely unclear.Here, we investigated whether edges caused by forest disturbances affect the individual fitness of two contrasting ungulates by examining the body mass of 378,602 roe deer (Capreolus capreolus) and Alpine chamois (Rupicapra rupicapra rupicapra) yearlings collected between 1992 and 2019 in the Eastern Alps.Transient edges had a significant positive effect on the body mass of both species. The effect size was larger for chamois than for roe deer, with yearling body mass increasing by up to 0.18 kg in female chamois for each 10 m ha−1 increase in edge density. Elevation modulated the effect of edges on chamois body mass, with a weaker effect of transient edges in high‐elevation forests that are naturally more open. The effect duration of transient edges was longer for roe deer than for chamois, lasting for up to 9 years post‐disturbance.The body mass effect of transient edges created by forest disturbances was an order of magnitude stronger than the effect of permanent edges between forests and other land cover types.Synthesis and applications: Increasing forest disturbances under climate change could improve the fitness of ungulates, potentially affecting forest recovery through browsing. Managers and hunting authorities should consider the effect of disturbances and dynamically changing carrying capacity of forest landscapes more explicitly when making decisions regarding habitat management and hunting policies. Such a dynamic perspective is an important element in balancing vital ungulate populations and healthy forest ecosystems. [ABSTRACT FROM AUTHOR]

Context: In the epididymis, epithelial cells manage changes in the luminal environment for proper sperm maturation. Moreover, aquaglyceroporins, a subgroup of aquaporins (AQP), modulate the transport of water, glycerol and other small molecules in epithelial cells. Aims: We aim to characterise the lining epithelium, quantify its cell composition and immunolocalise the aquaglyceroporins AQP3, AQP7, AQP9 and AQP10 alongside the epididymal ductus of three wild ruminant species, and to determine if species-specific differences could be associated with cauda sperm cryoresistance variations. Methods: Epididymides from Iberian ibex (n = 5), mouflon (n = 5) and chamois (n = 6) were obtained. Cauda spermatozoa were collected and sperm parameters were analysed before and after freezing. Histology and immunohistochemistry of AQP3, 7, 9, 10 and T-CD3 were performed in the caput, corpus and cauda epididymal regions. Key results: This work first describes the lining epithelium in Iberian ibex, mouflon and chamois epididymis along the three anatomical regions, consisting of principal, basal, apical, clear and halo cells. However, the percentage of each cell type differed in ibex compared to mouflon and chamois. The positive T-CD3 immunolabeling of all the halo cells confirmed their T-lymphocyte nature. Aquaglyceroporin expression patterns were similar among species, except for differences in AQP7 and AQP10 immunolocalisation in ibex. Species-specific differences in epididymal sperm cryoresistance were confirmed. Conclusions: The epididymal epithelium of the three wild ruminants differ in their relative number of cell types and AQP immunolocalisation, which ultimately appears to affect cauda epidydimal spermatozoa cryoresistance. Implications: Our study provides information on the relevance of the quantitative composition and AQP pattern expression in epididymal lining epithelium on sperm cryoresistance. Illustrative photograph of aquaglyceroporin immunolabeling (AQP9 expression in corpus region of Iberian ibex epididymis) Illustrative photograph of aquaglyceroporin immunolabeling (AQP9 expression in corpus region of Iberian ibex epididymis) This work describes the lining epithelium and expression patterns of aquaglyceroporins (AQP3, AQP7, AQP9 and AQP10) in the Iberian ibex, mouflon and chamois epididymis. Species-specific differences in cauda epididymal sperm cryoresistance were confirmed. Differences among the three wild ruminant epididymides in the relative number of epithelial cell types and the immunolocalisation of AQP7 and AQP10 appear to affect the cryoresistance of cauda epididymal spermatozoa. Photograph by Carlos Martínez-Cáceres. [ABSTRACT FROM AUTHOR]

As an inhabitant of the Alps, chamois are exposed to significant climatic changes throughout the year and are also strongly confronted with changing forage availability. Besides horizontal and vertical migratory movements as an adaptation, it undergoes physiological transformations and dynamic changes in the ruminal microbiota.The following study used 48 chamois of different ages and genders to investigate to which extent the ingested food plants, the resulting crude nutrients in the rumen (reticulorumen) contents, and the bacterial microbiota in the rumen and their fermentation products were influenced by the changes over the seasons. Very little is known about the microbiota of wild ruminants, and many bacterial taxa could only be determined to certain taxonomic levels in this study. However, adapted microbiota reflects the significant changes in the ingested forage and the resulting crude nutrients. For some taxa, our results indicated potential functional relationships. In addition, 15 genera were identified, representing almost 90% of the relative abundance, forming the central part of the microbial community throughout the year. The successful and flexible adaptation of chamois is reflected in the chamois rumen’s nutrient and microbial profile. This is also the first study that analyzes the microbiota of the chamois using rumen samples and considers the microbiota in a seasonal comparison.

Tatra chamois (Rupicapra rupicapra tatrica (Blahout 1972)) and Tatra marmot (Marmota marmota latirostris (Kratochvíl 1961)) are significant endemic subspecies of the subalpine and alpine ranges of the Tatra Mountains in Central Europe. In four studied localities in the range of their typical biotopes in Slovakia and Poland, we investigated intestinal parasites of Tatra chamois and Tatra marmots, with an emphasis on anoplocephalid tapeworms. We also studied the occurrence, species diversity, and abundance of oribatid mites as intermediate hosts thereof, and the prevalence of cysticercoid larval stages of anoplocephalid tapeworms in collected oribatids using morphological and molecular methods. Coprological analyses revealed the average positivity of Moniezia spp. in chamois faeces at 23.5% and Ctenotaenia marmotae in marmot samples at 71.1%, with significant differences between the localities under study. Morphological analyses determined the presence of cysticercoids in five oribatid species: Ceratozetes gracilis, Edwardzetes edwardsi, Scheloribates laevigatus, Trichoribates novus, and Tectocepheus velatus sarekensis. This is the first record of T. v. sarekensis as an intermediate host of anoplocephalid tapeworms, as well as the first report of Andrya cuniculi occurrence in the territory of the Tatra Mountains, confirmed also by molecular methods. [ABSTRACT FROM AUTHOR]

Ticks are major vectors of various pathogens of health importance, such as bacteria, viruses and parasites. The problems associated with ticks and vector-borne pathogens are increasing in mountain areas, particularly in connection with global climate change. We collected ticks (n = 2,081) from chamois and mouflon in 4 mountainous areas of France. We identified 6 tick species: Ixodes ricinus, Rhipicephalus bursa, Rh. sanguineus s.l., Haemaphysalis sulcata, H. punctata and Dermacentor marginatus. We observed a strong variation in tick species composition among the study sites, linked in particular to the climate of the sites. We then analysed 791 ticks for DNA of vector-borne pathogens: Babesia/Theileria spp., Borrelia burgdorferi s.l., Anaplasma phagocytophilum, A. marginale, A. ovis, and Rickettsia of the spotted fever group (SFG). Theileria ovis was detected only in Corsica in Rh. bursa. Babesia venatorum (2 sites), Borrelia burgdorferi s.l. (B. afzelii and B. garinii; 2 sites) and Anaplasma phagocytophilum (3 sites) were detected in I. ricinus. Anaplasma ovis was detected at one site in I. ricinus and Rh. sanguineus s.l. SFG Rickettsia were detected at all the study sites: R. monacensis and R. helvetica in I. ricinus at the 3 sites where this tick is present; R. massiliae in Rh. sanguineus s.l. (1 site); and R. hoogstraalii and Candidatus R. barbariae in Rh. bursa in Corsica. These results show that there is a risk of tick-borne diseases for humans and domestic and wild animals frequenting these mountain areas.

Abstract Background To date, whole genome sequencing has been performed mainly for isolates of Chlamydia trachomatis, C. pneumoniae, C. psittaci and C. abortus, but only a few isolates of C. pecorum have been entirely sequenced and this makes it difficult to understand its diversity and population structure. In this study the genome of two C. pecorum strains isolated from the lung of an Alpine chamois affected with pneumonia (isolate PV7855) and the brain of a water buffalo affected with meningoencephalomyelitis (isolate PV6959), were completely sequenced with MiSeq system (Illumina) and analyzed in their most polymorphic regions. Results The genome length and GC content of the two isolates were found to be consistent with other C. pecorum isolates and the gene content of polymorphic membrane proteins and plasticity zone was found to be very similar. Some differences were observed in the phospholipase genes for both isolates and in the number of genes in the plasticity zone, such as the presence of some hypothetical proteins in PV6959, not present in any other genomes analyzed in this study. Interestingly, PV6959 possesses an extra pmp and has an incomplete tryptophan biosynthesis operon. Plasmids were detected in both isolates. Conclusions Genome sequencing of the two C. pecorum strains did not reveal differences in length and GC content despite the origin from different animal species with different clinical disease. In the plasticity zone, the differences in the genes pattern might be related to the onset of specific symptoms or infection of specific hosts. The absence of a tryptophan biosynthesis pathway in PV6959 may suggest a strict relationship between C. pecorum and its host.

This study examines the situation of the population of chamois Rupicapra rupicapra in the canton of Jura (Switzerland) in order to highlight a potential gap between the management of the species and its natural dynamics. In addition, the situation of the species in the canton of Jura is compared to its national situation. The chamois number in the canton of Jura is far from the carrying capacity of the habitat, and the current management of the species is about to induce a decrease in the population, as evidenced by annual removal rates exceeding annual growth rates. Hunting management contributes thus to the gap from the natural equilibrium. Action should be taken as soon as possible to reverse this trend.

Based on the analysis of literary and archival sources, all stages of hand currying of animal skins, representing the full cycle of technological processes of their transformation into leather among the Northern and Southern Altaians, are reconstructed. The main materials about the work of the Altai tanners are drawn from the sources of the 1930s — the time when traditional leather currying was a mundane task in every family of cattle breeders or hunters. The main techniques of manual processing of hides and the basic stages of their transformation into leather are considered. The purposes and results of each stage of the technological process in the production of leather material are shown: preservation, soaking, grounding, dehairing, impregnation with special solutions for the purpose of fermentation, tanning, softening, and smoke-drying of the skin. Like other pastoral and hunting peoples, the Altaians sewed fur clothing and footwear, for which purpose they used a composition made from fermented crushed liver and brain of animals to loosen the “bakhtarma” (the reverse side of the skin) and preserve the hair on the skin. When currying sheepskin, the Teleuts, who were engaged in agriculture, used grain crops for the same purpose, preparing liquid dough for impregnation and tanning of the skin. Following the currying, the hide (skin) was smoke-dried. Soaked in fat and smoked skin did not harden in the rain and snow, and in summer its smell repelled mosquitoes and parasites. The result of laborious and time-consuming operations carried out by the ancient Altai tanners was the mastery of the technique of producing rawhide and tanned leather, as well as the manufacture of suede, which were used for the production of traditional clothing, footwear, objects of worship (shamanic drums) and everyday life. The southern Altaians even in the first third of the last century preserved the ancient tradition of sheepskin softening by fingernails. Women used their teeth to soften tough rawhide. One of the wooden implements for leather softening — edrek (Rus.: myalka), widely used in the cultures of nomads of the steppes and taiga, — still existed, according to the findings of archaeologists, among the early nomads of the Hunno-Sarmatian epoch (2nd c. BC — 5th c. AD). The results obtained by the study can be used to popularize the knowledge about environmentally friendly technological methods in the production of leather and peculiarities of local Altai traditions in the manufacture of hides by hand.

Animals perceive human activities as risky and generally respond with fear‐induced proactive behaviors to buffer the circadian patterns of lethal and nonlethal disturbances, such as diel migrations (DMs) between risky places during safe nighttime and safer places during risky daytime. However, such responses potentially incur costs through movement or reduced foraging time, so individuals should adjust their tolerance when human activities are harmless, through habituation. Yet this is a challenging cognitive task when lethal and nonlethal risks co‐occur, forming complex landscapes of fear. The consequences of this human‐induced complexity have, however, rarely been assessed. We studied the individual DM dynamics of chamois (Rupicapra rupicapra rupicapra), 89 GPS‐tracked individual‐years, from/to trails in the French Alps in areas with co‐occurring lethal (hunting) and nonlethal (hiking and skiing) disturbances, with different intensities across seasons. We developed a conceptual framework relying on the risk‐disturbance hypothesis and habituation to predict tolerance adjustments of chamois under various disturbance contexts and across contrasted seasonal periods. Based on spatial and statistical analyses combining periodograms and multinomial logistic models, we found that DM in relation to distance to a trail was a consistent response by chamois (~85% of individuals) to avoid human disturbance during daytime, especially during the hiking and hunting periods. Such behavior revealed a low tolerance of most chamois to human activities, although there was considerable interindividual heterogeneity in DM. Interestingly, there was an increased tolerance among the most disturbed diel migrants, potentially through habituation, with chamois performing shorter DMs in areas highly disturbed by hikers. Crucially, chamois that were most human‐habituated during the hiking period remained more tolerant in the subsequent harvesting period, which could increase their risk of being harvested. In contrast, individuals less tolerant to hiking performed longer DMs when hunting risk increased, and compared to hiking, hunting exacerbated the threshold distance to trails triggering DMs. No carryover effect of hunting beyond the hunting period was observed. In conclusion, complex human‐induced landscapes of fear with co‐occurring disturbances by nature‐based tourism and hunting may shape unexpected patterns of tolerance to human activities, whereby animal tolerance could become potentially deleterious for individual survival. [ABSTRACT FROM AUTHOR]

Background: To date, whole genome sequencing has been performed mainly for isolates of Chlamydia trachomatis, C. pneumoniae, C. psittaci and C. abortus, but only a few isolates of C. pecorum have been entirely sequenced and this makes it difficult to understand its diversity and population structure. In this study the genome of two C. pecorum strains isolated from the lung of an Alpine chamois affected with pneumonia (isolate PV7855) and the brain of a water buffalo affected with meningoencephalomyelitis (isolate PV6959), were completely sequenced with MiSeq system (Illumina) and analyzed in their most polymorphic regions. Results: The genome length and GC content of the two isolates were found to be consistent with other C. pecorum isolates and the gene content of polymorphic membrane proteins and plasticity zone was found to be very similar. Some differences were observed in the phospholipase genes for both isolates and in the number of genes in the plasticity zone, such as the presence of some hypothetical proteins in PV6959, not present in any other genomes analyzed in this study. Interestingly, PV6959 possesses an extra pmp and has an incomplete tryptophan biosynthesis operon. Plasmids were detected in both isolates. Conclusions: Genome sequencing of the two C. pecorum strains did not reveal differences in length and GC content despite the origin from different animal species with different clinical disease. In the plasticity zone, the differences in the genes pattern might be related to the onset of specific symptoms or infection of specific hosts. The absence of a tryptophan biosynthesis pathway in PV6959 may suggest a strict relationship between C. pecorum and its host. [ABSTRACT FROM AUTHOR]

Simple Summary: Sarcoptic mange represents an important concern for chamois management; in our study, the effects of an epidemic were monitored on an alpine population from 2006 to 2020. Passive surveillance and demographic data were analyzed in order to describe a mange outbreak. Furthermore, an enhanced passive surveillance protocol was implemented in a subpart of the study area in order to evaluate the efficiency of the ordinary one. Generally, the demographic decline caused by the epidemic reached the highest values between the first and the third year after the first mange cases. The enhanced passive surveillance approach proved to be an important asset for disease surveillance: However, its adoption may be too costly if applied for longer periods on a wide scale. Passive surveillance, in both ordinary and enhanced surveillance protocol, should encompass the use of other monitoring strategies in the future to study the eco-epidemiology of this disease in wild Caprinae. Since 1995, the Alpine chamois (Rupicapra r. rupicapra) population of the Dolomites has been affected by sarcoptic mange with considerable management concerns. In this study, 15 years (2006–2020) of passive surveillance and demographic data were analyzed in order to describe a mange outbreak. Furthermore, an enhanced passive surveillance protocol was implemented in order to evaluate the efficiency of ordinary vs. enhanced surveillance protocol in identifying dead chamois in the field and in reaching a correct diagnosis. Our results confirm the role of mange as a determining factor for chamois mortality, while stressing the importance of a wider view on the factors affecting population dynamics. The enhanced passive surveillance protocol increased the probability of carcass retrieval and identification of the cause of death; however, its adoption may be too costly if applied for long periods on a wide scale. Passive surveillance, in both ordinary and enhanced surveillance protocol, should encompass the use of other strategies in the future to study the eco-epidemiology of the disease in wild Caprinae. [ABSTRACT FROM AUTHOR]

Tatra chamois (Rupicapra rupicapra tatrica (Blahout 1972)) and Tatra marmot (Marmota marmota latirostris (Kratochvíl 1961)) are significant endemic subspecies of the subalpine and alpine ranges of the Tatra Mountains in Central Europe. In four studied localities in the range of their typical biotopes in Slovakia and Poland, we investigated intestinal parasites of Tatra chamois and Tatra marmots, with an emphasis on anoplocephalid tapeworms. We also studied the occurrence, species diversity, and abundance of oribatid mites as intermediate hosts thereof, and the prevalence of cysticercoid larval stages of anoplocephalid tapeworms in collected oribatids using morphological and molecular methods. Coprological analyses revealed the average positivity of Moniezia spp. in chamois faeces at 23.5% and Ctenotaenia marmotae in marmot samples at 71.1%, with significant differences between the localities under study. Morphological analyses determined the presence of cysticercoids in five oribatid species: Ceratozetes gracilis, Edwardzetes edwardsi, Scheloribates laevigatus, Trichoribates novus, and Tectocepheus velatus sarekensis. This is the first record of T. v. sarekensis as an intermediate host of anoplocephalid tapeworms, as well as the first report of Andrya cuniculi occurrence in the territory of the Tatra Mountains, confirmed also by molecular methods.

Simple Summary: The successive glaciations that took place during the Pleistocene shaped de distribution of temperate species in Europe, both plants and animals. Traditionally, it has been hypothesized that during the coldest periods, species took refuge in three areas of southern Europe (Iberian, Italian and Balkan peninsulas) and then recolonized the north when temperatures rose and conditions were more favorable. In the present work, the complete mitochondrial sequences of the ten described chamois populations have been analyzed to identify which areas of the continent have served as refuges for the species during the glaciations. The results of the present work are consistent with the existence of multiple glacial refugia across Europe, revealing a much more complex picture of the effect of glaciations on the genetics of temperate species than is commonly accepted, giving us a better understanding of how past events determine the present species. The current distribution of populations in Europe is marked by the effects of glaciations that occurred during the Pleistocene. Temperate species were isolated in glacial refugia that were the sources of postglacial recolonization. The traditional glacial refuge areas were the Iberian, the Italian and the Balkan peninsulas. Here we revisit the evolutionary history of chamois (Rupicapra genus) to evaluate other sites in continental Europe and Anatolia that have been suggested as potential refuges. We have obtained the complete mitochondrial sequence of seven chamois, including the subspecies parva, carpatica, caucasica, and asiatica whose mitochondrial genome had not been yet reported. These, together with the other fourteen sequences already in the GenBank, represent the different geographical populations of the Rupicapra genus. The phylogenetic analysis showed the three old clades, dating from the early Pleistocene, already reported: mtW in the Iberian Peninsula, mtC in the Appenines and the Massif of Chartreuse, and mtE comprising all the population from the Alps to the east. The genomes within each of the clades mtW and mtE, showed divergence times larger than 300 thousand years. From here, it can be argued that the present-day lineages across Europe are very old and their split dates back to the middle Pleistocene. [ABSTRACT FROM AUTHOR]

Simple Summary: Wildlife disease surveillance can be considered an essential tool for providing important information about the health status of the population and for protecting human health. Between 2000 and 2020, 284 chamois carcasses from the entire home range of the species in Slovenia were examined using comprehensive necropsy and other laboratory tests. The results indicate a wide range of chamois diseases, but none of the identified diseases can be considered a significant health threat to other wildlife species and/or to humans. In this paper, we provide an overview of the causes of death of Alpine chamois (Rupicapra r. rupicapra) diagnosed in the national passive health surveillance of chamois in Slovenia. From 2000 to 2020, 284 free-ranging chamois provided by hunters were necropsied at the Veterinary Faculty, University of Ljubljana, Slovenia. Depending on the results of complete necropsy, histopathological, bacteriological, parasitological, and virological examinations, a descriptive data analysis was performed. The most common causes of death in chamois were infectious diseases (82.2%), followed by non-infectious diseases (11.8%). Of all the causes of death, parasitic infections accounted for 70.3%, trauma for 9.7%, and bacterial infections for 9.3% of all cases. Less common diseases were viral infections, neoplasms, winter starvation, and metabolic disorders. [ABSTRACT FROM AUTHOR]

The results of previous studies of SRLV infections in wild ruminants suggest that wild ruminants may serve as virus reservoirs responsible for the infections of domestic small ruminants. It is possible that SRLVs circulate in free-ranging mouflons in Slovenia, but considering the results of previous studies in which SRLV infections were detected in mouflons, it is very likely that the detected seropositive animal is an accidental spillover host for SRLV. Keywords: small ruminant lentiviruses; SRLV; maedi-visna; caprine arthritis-encephalitis; chamois; mouflon; serology; ELISA; survey EN small ruminant lentiviruses SRLV maedi-visna caprine arthritis-encephalitis chamois mouflon serology ELISA survey N.PAG N.PAG 6 04/26/22 20220415 NES 220415 1. [Extracted from the article]

Fecal cortisol metabolites (FCMs) are widely used to track stress responses in wildlife and captive species. Rules of thumb suggest that samples should be collected as soon as possible after defecation, to avoid decay of FCMs. To date, however, only a few studies investigated the stability of defecated FCMs over time, and most of them were conducted in controlled laboratory conditions. Here, we investigated the stability of FCMs over seven consecutive days, in two mountain-dwelling ungulates, under natural environmental conditions using a semi-experimental approach. Fecal samples from Northern chamois Rupicapra rupicapra (n = 24) and red deer Cervus elaphus (n = 22) were collected in summer of 2020 within the Stelvio National Park, Italy, and placed in an open area above 2000 m a.s.l. For the next 7 days, we collected a portion of each sample, and all sub-samples were analyzed with an 11-oxoetiocholanolone enzyme immunoassay. Exposure, temperature, and precipitation were fitted as covariates in non-linear generalized mixed models to assess FCM variation over time, and competing models were selected using AICc. For chamois, the best model included only time as a predictor, while for red deer, it included time, precipitation, and exposure. For both species, FCM values decreased rapidly from the first days after deposition until the fourth day. For red deer, in northern-exposed samples, FCM values decreased slower than in south-exposed ones; furthermore, FCM values increased with increasing precipitation. Our results offer a solid methodological basis to wildlife researchers and practitioners interested in the investigation of the ecological factors affecting stress variation in wildlife and support the recommendation to collect samples as fresh as possible, to avoid misleading inference. Further studies are necessary to evaluate the stability of FCMs when other enzyme immunoassays are used. [ABSTRACT FROM AUTHOR]

Uptake and use of energy are of key importance for animals living in temperate environments that undergo strong seasonal changes in forage quality and quantity. In ungulates, energy intake strongly affects body mass gain, an important component of individual fitness. Energy allocation among life‐history traits can be affected by internal and external factors. Here, we investigate large‐scale variation in body growth patterns of Alpine chamois Rupicapra rupicapra rupicapra, in relation to sex, age, temperature, and habitat variations across 31 (sub)populations in the Central European Alps. Taking advantage of an exceptionally large dataset (n = 178,175) of chamois hunted over 27 consecutive years between 1993 and 2019 in mountain ranges with different proportions of forest cover, we found that (i) patterns of body mass growth differ between mountain ranges, with lower body mass but faster mass growth with increasing proportion of forest cover and that (ii) the effect of spring and summer temperatures on changes in body growth patterns are larger in mountain ranges with lower forest cover compared to mountain ranges with higher forest cover. Our results show that patterns of body mass growth within a species are more plastic than expected and depend on environmental and climatic conditions. The recent decline in body mass observed in Alpine chamois populations may have greater impacts on populations living above the treeline than in forests, which may buffer against the effects of increasing temperatures on life‐history traits. [ABSTRACT FROM AUTHOR]

Abstract Investigating the drivers of diet quality is a key issue in wildlife ecology and conservation. Fecal near infrared reflectance spectroscopy (f‐NIRS) is widely used to assess dietary quality since it allows for noninvasive, rapid, and low‐cost analysis of nutrients. Samples for f‐NIRS can be collected and analyzed with or without knowledge of animal identities. While anonymous sampling allows to reduce the costs of individual identification, as it neither requires physical captures nor DNA genotyping, it neglects the potential effects of individual variation. As a consequence, regression models fitted to investigate the drivers of dietary quality may suffer severe issues of pseudoreplication. I investigated the relationship between crude protein and ecological predictors at different time periods to assess the level of individual heterogeneity in diet quality of 22 marked chamois Rupicapra rupicapra monitored over 2 years. Models with and without individual grouping effect were fitted to simulate identifiable and anonymous fecal sampling, and model estimates were compared to evaluate the consequences of anonymizing data collection and analysis. The variance explained by the individual random effect and the value of diet repeatability varied with seasons and peaked in winter. Despite the occurrence of individual variation in dietary quality, ecological parameter estimates under identifiable or anonymous sampling were consistently similar. This study suggests that anonymous fecal sampling may provide robust estimates of the relationship between dietary quality and ecological correlates. However, since the level of individual heterogeneity in dietary quality may vary with species‐ or study‐specific features, inconsequential pseudoreplication should not be assumed in other taxa. When individual differences are known to be inconsequential, anonymous sampling allows to optimize the trade‐off between sampling intensity and representativeness. When pseudoreplication is consequential, however, no conclusive remedy exists to effectively resolve nonindependence.

Pneumonia is a common disease affecting Alpine chamois. However, little is known concerning the etiological agents involved. We investigated whether Mycoplasma spp. infection occurs in Alpine chamois and describe the microscopic lesions associated with Mycoplasma -associated bronchopneumonia in this species. Lung tissues obtained from 45 chamois with gross evidence of pneumonia were analysed. The histological lesions and the presence of lungworms within the lungs were evaluated blindly. The presence of Mycoplasma spp. was assessed by immunohistochemistry ( Mycoplasma bovis and Mycoplasma mycoides subsp . mycoides ) and by end-point PCR. M. bovis was detected by immunohistochemistry and confirmed by PCR and sequencing in 6/45 (13%) cases, while all lungs were negative for M. mycoides subsp . mycoides . A significant association was found between the detection of M. bovis and the presence of severe lungworms infection in the examined lungs. We report for the first time M. bovis as a bacteria associated with verminous pneumonia in chamois., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Bullone, Divari, Sereno, Bassano, Gelmetti, Gibelli, Pregel, Bollo and Scaglione.)

Climate change is known to affect key life‐history traits, such as body mass, reproduction, and survival in many species. Animal populations inhabiting mountain habitats are adapted to extreme seasonal environmental conditions but are also expected to be especially vulnerable to climate change. Studies on mountain ungulates typically focus on populations or sections of populations living above the tree line, whereas populations inhabiting forested habitats are largely understudied. Here, we investigate whether forested areas can mitigate the impact of climatic change on life‐history traits by evaluating the interactive effects of temperature and habitat characteristics on body mass variation in the Alpine chamois Rupicapra rupicapra rupicapra. We examined data of 20,573 yearling chamois collected from 1993 to 2019 in 28 mountain ranges in the Austrian Eastern Alps, characterized by different proportion of forest cover. Our results show that the temporal decline of chamois body mass is less pronounced in areas with greater proportion of forest cover. For chamois living in forest habitats only, no significant temporal change in body mass was detected. Variation in body mass was affected by the interaction between density and snow cover, as well as by the interaction between spring temperatures and forest cover, supporting the role of forests as thermal buffer against the effects of increasing temperatures on life‐history traits in a mountain ungulate. In turn, this study suggests a buffering effect of forests against climate change impacts. Assessments of the consequences of climate change on the life‐history traits and population dynamics of mountain‐dwelling species should thus consider the plasticity of the species with respect to the use and availability of different habitat types. [ABSTRACT FROM AUTHOR]

Since 1995, the Alpine chamois (Rupicapra r. rupicapra) population of the Dolomites has been affected by sarcoptic mange with considerable management concerns. In this study, 15 years (2006–2020) of passive surveillance and demographic data were analyzed in order to describe a mange outbreak. Furthermore, an enhanced passive surveillance protocol was implemented in order to evaluate the efficiency of ordinary vs. enhanced surveillance protocol in identifying dead chamois in the field and in reaching a correct diagnosis. Our results confirm the role of mange as a determining factor for chamois mortality, while stressing the importance of a wider view on the factors affecting population dynamics. The enhanced passive surveillance protocol increased the probability of carcass retrieval and identification of the cause of death; however, its adoption may be too costly if applied for long periods on a wide scale. Passive surveillance, in both ordinary and enhanced surveillance protocol, should encompass the use of other strategies in the future to study the eco-epidemiology of the disease in wild Caprinae.

The current distribution of populations in Europe is marked by the effects of glaciations that occurred during the Pleistocene. Temperate species were isolated in glacial refugia that were the sources of postglacial recolonization. The traditional glacial refuge areas were the Iberian, the Italian and the Balkan peninsulas. Here we revisit the evolutionary history of chamois (Rupicapra genus) to evaluate other sites in continental Europe and Anatolia that have been suggested as potential refuges. We have obtained the complete mitochondrial sequence of seven chamois, including the subspecies parva, carpatica, caucasica, and asiatica whose mitochondrial genome had not been yet reported. These, together with the other fourteen sequences already in the GenBank, represent the different geographical populations of the Rupicapra genus. The phylogenetic analysis showed the three old clades, dating from the early Pleistocene, already reported: mtW in the Iberian Peninsula, mtC in the Appenines and the Massif of Chartreuse, and mtE comprising all the population from the Alps to the east. The genomes within each of the clades mtW and mtE, showed divergence times larger than 300 thousand years. From here, it can be argued that the present-day lineages across Europe are very old and their split dates back to the middle Pleistocene.

Small ruminant lentiviruses (SRLVs) belong to the genus Lentivirus in the Retroviridae family, which are responsible for the diseases maedi-visna and caprine arthritis-encephalitis in sheep and goats worldwide and are also widespread in Slovenian sheep and goats. SRLVs cause lifelong infections with chronic inflammatory lesions in various organ systems. Cross-species transmission of SRLV strains in sheep and goats is well documented, but there are few data on the ability of these viruses to infect wild ruminants. The objective of this study was to investigate whether SRLVs circulate among wild small ruminants in Slovenia. During the 2017–2018 hunting season, a total of 38 blood samples were collected from free-ranging chamois (Rupicapra rupicapra) and European mouflon (Ovis ammon musimon). The serum samples were tested for antibodies against SRLV by enzyme-linked immunosorbent assay (ELISA). The serological tests revealed that of all tested mouflons, 1 animal (11.1%) was seropositive, while all samples from chamois were negative. Based on the results of this study and considering the results of previous studies in which SRLV infections were detected in mouflons with low seroprevalence, it is very likely that the detected seropositive animal was an incidental spillover host for SRLV. Although no seropositive samples were found in chamois, we cannot speculate on whether chamois may not be a host for SRLV infection because of the small sample size and the disadvantages of the ELISA assay used when applied to samples from chamois.

In this paper, we provide an overview of the causes of death of Alpine chamois (Rupicapra r. rupicapra) diagnosed in the national passive health surveillance of chamois in Slovenia. From 2000 to 2020, 284 free-ranging chamois provided by hunters were necropsied at the Veterinary Faculty, University of Ljubljana, Slovenia. Depending on the results of complete necropsy, histopathological, bacteriological, parasitological, and virological examinations, a descriptive data analysis was performed. The most common causes of death in chamois were infectious diseases (82.2%), followed by non-infectious diseases (11.8%). Of all the causes of death, parasitic infections accounted for 70.3%, trauma for 9.7%, and bacterial infections for 9.3% of all cases. Less common diseases were viral infections, neoplasms, winter starvation, and metabolic disorders.

The Balkan chamois (Rupicapra r. Balcanica, Bolkay 1925) inhabits certain mountainous areas and certain canyons of the rivers of Bosnia and Herzegovina, including the Zelengora Special Hunting Ground and the Sutjeska National Park. It is very modest in terms of nutrition, but it is demanding in terms of habitat, where peace in the habitat is considered one of the main factors for its survival and loyalty to the habitat. Some of the most important chamois habitats in Bosnia and Herzegovina are Zelengora, Treskavica, Visočica, Bjelašnica, Prenj, Čvrsnica, Vran, Šator, Gnjat, Kamenica, Sušica, as well as the canyons of the rivers Una, Ugar, Tara, Drina, Sutjeska, Hrčavka and others. Many of these habitats were devastated during the 1990s, when most of these habitats were decimated due to the abundance of many wild species, including chamois, due to the civil war. Although these habitats provide very good conditions in the mountain massifs and canyons of individual mountain rivers, chamois always strive to choose the best and most suitable locations in these areas for the satisfying of daily and seasonal living needs. According to the above, chamois habitats vary in terms of characteristics, and their distribution is determined by specific requirements in terms of food, water, space, and cover, and it is very important that it can achieve vertical and horizontal migrations in their habitat. Migrations are more pronounced with the changes of the seasons, so in winter they descend to lower habitats where it is easier to find food, and with the melting of snow in vertical directions, they re-occupy the highest areas in their habitat. For these reasons, we have presented the specific localities that represent the most important habitats and main migration routes of chamois in the Special Hunting Ground "Zelengora" and the National Park "Sutjeska". [ABSTRACT FROM AUTHOR]

Knowledge of population trends is of key importance for sustainable management of wildlife and finding reliable and cost–effective monitoring methods is therefore of great interest. In two populations of Alpine chamois Rupicapra rupicapra, we collected data on mortality from 12 424 individuals hunted or found dead and population size data based on ground counts over a period of 28 years. Our study had three aims: 1) we investigated if changes in population size obtained with a simple deterministic population reconstruction (DPR) approach using hunting and natural mortality covary with population size estimates obtained from ground count data. 2) We investigated if the performance of DPR is affected by the removal of natural mortality data. 3) We assessed how many years of mortality data are needed to obtain consistent population trends using DPR. Our results suggested that 1) population abundance from mortality data using DPR significantly and positively correlated with population abundance obtained with ground counts. 2) DPR without natural mortality data performed similarly as compared to DPR using full data (hunting and natural mortality). 3) Consistent estimates of population trends can be obtained with ≥10 years of mortality data, however, this time span was influenced by the mean age at death, which in turn was affected by the local hunting regime. Our results suggest that DPR and ground counts perform similarly for the estimation of temporal trends in Alpine chamois abundance. The consistence of ground counts and DPR supports the use of these methods as reliable tools for tracking abundance of chamois populations over time. However, the reliability of abundance estimates using DPR may vary between populations and the influence of different hunting regimes must be considered for the correct interpretation of results. [ABSTRACT FROM AUTHOR]

The chamois is widely perceived as a strictly high-elevation ungulate, though its spatial behavior suggests fairly high phenotypic plasticity and long-range dispersal abilities. Here, we describe and discuss five events of 'unconventional' habitat use by chamois, i.e., individuals found swimming in the sea of Croatia and Spain, between 2004 and 2019. In four cases, sex, age, swimming distance and direction were recorded. The chamois were young males up to 5 years of age, with swimming distances of ca 300 to 3300 m. In Croatia, two individuals were found swimming across sea stretches and one towards the coast; in Spain the chamois was seemingly swimming towards the open sea. The reasons for such unusual behavior remain unknown. Although it might represent the outcome of a maladaptive combination of physiological needs (e.g., individual attempts to disperse) and constraining casualties (e.g., environmental or anthropogenic barriers), the limited information suggests caution in interpretation. Swimming behavior in chamois is not new. To our knowledge, however, this is the first reported information on the use of sea stretches, which suggests that even medium sized water courses and lakes are unlikely to fully block chamois movements. [ABSTRACT FROM AUTHOR]

Investigating the drivers of diet quality is a key issue in wildlife ecology and conservation. Fecal near infrared reflectance spectroscopy (f‐NIRS) is widely used to assess dietary quality since it allows for noninvasive, rapid, and low‐cost analysis of nutrients. Samples for f‐NIRS can be collected and analyzed with or without knowledge of animal identities. While anonymous sampling allows to reduce the costs of individual identification, as it neither requires physical captures nor DNA genotyping, it neglects the potential effects of individual variation. As a consequence, regression models fitted to investigate the drivers of dietary quality may suffer severe issues of pseudoreplication. I investigated the relationship between crude protein and ecological predictors at different time periods to assess the level of individual heterogeneity in diet quality of 22 marked chamois Rupicapra rupicapra monitored over 2 years. Models with and without individual grouping effect were fitted to simulate identifiable and anonymous fecal sampling, and model estimates were compared to evaluate the consequences of anonymizing data collection and analysis. The variance explained by the individual random effect and the value of diet repeatability varied with seasons and peaked in winter. Despite the occurrence of individual variation in dietary quality, ecological parameter estimates under identifiable or anonymous sampling were consistently similar. This study suggests that anonymous fecal sampling may provide robust estimates of the relationship between dietary quality and ecological correlates. However, since the level of individual heterogeneity in dietary quality may vary with species‐ or study‐specific features, inconsequential pseudoreplication should not be assumed in other taxa. When individual differences are known to be inconsequential, anonymous sampling allows to optimize the trade‐off between sampling intensity and representativeness. When pseudoreplication is consequential, however, no conclusive remedy exists to effectively resolve nonindependence. [ABSTRACT FROM AUTHOR]

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Meat originating from roe, deer and especially chamois is expensive. Normally, such delicacies are provided directly by hunters and exclusively during the hunting season. In some cases, either to achieve higher profit or to enable total availability over a longer period, producers may keep only a low proportion of such meat in mixtures or even replace it completely by a less pricey meat product. Food control laboratories need sensitive, reliable, fast and easily applicable laboratory methods to detect such fraudulent practices and confirm species authenticity. We therefore developed a real-time PCR pentaplex using proven primers to detect simultaneously the presence of expensive species (roe, deer and chamois) and the potentially added meat from cheaper farm animals like pork and beef. In this context, we present the validation data for the quantitative determination of all five species in a multiplex real-time PCR. The measurement uncertainty was estimated to be 20%. A ring trial showed the robustness and practicability of this system. Market samples were analysed as well showing the applicability of this system to real-life samples. [ABSTRACT FROM AUTHOR]

Hepatitis E virus (HEV) is a worldwide public health concern, with an increase in human autochthonous cases in Europe. Although domestic pigs and wild boar (Sus scrofa) are the main reservoirs of HEV, the constant expansion of wild ruminants increases the potential for HEV transmission. We investigated HEV infection in chamois (Rupicapra rupicapra) and red deer (Cervus elaphus) in the Italian Alps using an enzyme-linked immunosorbent assay (ELISA). We detected HEV antibodies from 2013 to 2015 in both host species, with seroprevalences of 1.2% and 0.8% in chamois and red deer, respectively. All serum samples that were positive to HEV antibodies by ELISA were negative when tested by real-time reverse-transcriptase PCR to detect HEV RNA. The observed low seroprevalence of HEV suggested a sporadic circulation of HEV in the alpine environment, and it was consistent with the low seroprevalence observed in wild boar in the Alps. Our observations supported the role of chamois and red deer as spillover hosts of HEV infections in the Italian Alps. [ABSTRACT FROM AUTHOR]

How large herbivores track resource quantity and quality through time has formed the core of an abundance of literature on migratory populations in recent decades. Yet, relating foraging processes and habitat selection patterns in resident populations, where spatial heterogeneity of food resources is fine‐grained and/or where the portion of edible plants (i.e. the foodscape) is low, is challenging. We addressed this issue in a mountain population of chamois Rupicapra rupicapra, an intermediate feeder, whose individuals do not migrate. We relied on a rare combination of data on habitat use of 50 GPS‐collared females and data on the quantity (biomass) and quality (phenology) of edible resources in their landscape, derived from field sampling of vegetation, remote sensing and diet (DNA barcoding). The foodscape of the chamois was composed of a low proportion of the available biomass (<18%), including relatively high‐quality plants, with low spatial covariation between plant phenology and biomass. Chamois avoided areas with a low edible biomass (where the intake rate may be too low) and focused on areas with plants at approximately the flowering stage, whatever the average plant phenological stage available. Due to this constant preference for flowering plants, home range selection ratios therefore shifted during the summer from a selection of more advanced plants in June to their avoidance in August. When the phenology scores of all plants available, rather than edible plants only, were considered, areas with relatively more advanced plants were selected all summer long. This exemplifies that, when traits from edible plants are different from those of all plants available, it is crucial to consider the actual foodscape to decipher forage and habitat selection processes. By integrating species‐specific dimensions of resources in habitat selection studies, we believe understanding of the foraging processes will be improved. [ABSTRACT FROM AUTHOR]

Tick-borne encephalitis was limited to northeast portions of Italy. We report in Lombardy, a populous region in the northwest, a chamois displaying clinical signs of tickborne encephalitis virus that had multiple virus-positive ticks attached, as well as a symptomatic man. Further, we show serologic evidence of viral circulation in the area.

Antimicrobial resistance (AMR) has spread worldwide due to the inappropriate use of antimicrobial drugs in human and veterinary medicine, becoming a public health problem. However, little is known about its occurrence and maintenance in wild animals, and very few studies have been carried out in ecosystems subjected to low human pressure. In our study, nasal and lung swabs were collected from hunted Pyrenean chamois (Rupicapra pyrenaica), and nasal swabs from sympatric domestic sheep were also collected. The swabs were cultured in agar plates to obtain bacterial isolates from the Pasteurellaceae family. The presence of AMR was assessed in a total of 28 Pasteurellaceae isolates from 45 Pyrenean chamois, and 9 isolates from sympatric domestic sheep found in the National Hunting Reserve of Freser-Setcases (Northeastern Pyrenees, Spain). The isolates belonged to one of the following three species: Pasteurella multocida, Mannheimia haemolytica and Bibersteinia trehalosi. Some P. multocida and M. haemolytica isolates tested positive for AMR. The statistical analysis revealed no differences between the AMR levels from chamois and domestic sheep isolates. However, one P. multocida of chamois origin presented resistance to cephalosporins and fluoroquinolones, which are antibiotics of critical importance for human health. Further studies are required to elucidate potential routes of dissemination of AMR genes in natural environments and assess any significant persistence in wildlife to design risk mitigation actions.

Although the two species of chamois (Rupicapra rupicapra and R. pyrenaica) are currently classified as least-concern by the IUCN (International Union for Conservation of Nature), inconsistencies on the subspecies classification reported in literature make it challenging to assess the conservation status of the single subspecies. Previous studies relying on mitochondrial genes, sometimes in combination with nuclear or Y-chromosome markers, reported the presence of clusters corresponding to the geographic distribution but highlighting ambiguities in the genus phylogeny. Here we report novel de novo assembled sequences of the mitochondrial genome from nine individuals, including previously unpublished R. r. balcanica and R. r. tatrica subspecies, and use them to untangle the genus phylogeny. Our results based on the full mitogenome inferred phylogeny confirm the previously reported genus subdivision in three clades and its monophyletic positioning within the Caprinae. Phylogeny and taxonomy of Rupicapra species thus remain controversial prompting for the inclusion of archeological remains to solve the controversy.

Most habitats are distributed heterogeneously in space, forcing animals to move according to both habitat characteristics and their needs for energy and safety. Animal space use should therefore vary according to habitat characteristics, a process known as the "functional response" in habitat selection. This response has often been tested vis-à-vis the proportion of a habitat category within areas available to individuals. Measuring sought-after resources in landscape where they are continuously distributed is a challenge and we posit here that both the mean availability of a resource and its spatial variation should be measured. Accordingly, we tested for a functional response in habitat selection according to these two descriptors of the resource available for a mountain herbivore. We hypothesized that selection should decrease with mean value of resources available and increase with its spatial variation. Based on GPS data from 50 chamois females and data on the actual foodscape (i.e. distribution of edible-only biomass in the landscape), we estimated individual selection ratio (during summer months) for biomass at the home range level, comparing edible biomass in individual home ranges and the mean and standard deviation of edible biomass in their available range. Chamois being a group-living species, available accessible ranges were shared by several individuals that formed socio-spatial groups (clusters) in the population. As expected, selection ratios increased with the standard deviation of edible resources in each cluster, but unlike our prediction, was unrelated to its mean. Selection of areas richer in resources hence did not fade away when more resources were available on average, a result that may be explained by the need for this capital breeder species to accumulate fat-reserve at a high rate during summer months. Low spatial variation could limit the selection of chamois, which highlights the importance of resource distribution in the process of habitat selection. [ABSTRACT FROM AUTHOR]

Context: Many species experience ecosystem changes due to alterations in climate or interspecific interactions. Animals' optimal use of landscapes involves adjusting spatial displacement and habitat use according to weather or climate, however, competitive interactions may affect such behavioural responses. Species in alpine landscapes are already at their upper altitudinal range, which can limit behavioural response to ecosystem changes. Objectives: We investigated how ibex's use of habitat and altitude was affected by weather, climate, and intra- and interspecific competition in an alpine landscape in Switzerland. Methods: We combined data from GPS-collared ibex with data on temperature and precipitation, habitat and altitude, and abundance estimates of ibex, chamois, and red deer within the study area. We modelled how the temporal dynamics of habitat and altitude use by ibex was modified by weather, ungulate abundance, and their interactions. Results: Short- and long-term weather conditions affected ibex's use of landscape throughout the year as expected based on its ecology, with particularly strong effects of temperature during spring and summer. During spring and autumn, ibex used higher altitudes and less grassland when red deer abundance was high and ibex abundance low. The influence of weather and climate on how ibex used the landscape was only weakly affected by interspecific competition. Conclusions: Our results suggest that the way that ibex use the landscape is affected by environmental conditions and intra- and interspecific interactions. These factors seem to have additive effects on ibex behaviour. [ABSTRACT FROM AUTHOR]

Knowledge about vector-borne pathogens important for human and veterinary medicine in wild ruminants in Tyrol (Austria) is scarce. Blood samples from Alpine ibex (Capra ibex; n = 44), Alpine chamois (Rupicapra rupicapra; n = 21), roe deer (Capreolus capreolus; n = 18) and red deer (Cervus elaphus; n = 6) were collected over a period of 4 years (2015–2018) in four regions in North Tyrol, with a primary focus on the Kaunertal. Blood spots on filter paper were tested for the presence of DNA of vector-borne pathogens (Anaplasmataceae, Piroplasmida, Rickettsia and filarioid helminths). Anaplasma phagocytophilum and Babesia capreoli were detected in two of 89 (2.3%) blood samples. Rickettsia spp., Theileria spp. and filarioid helminths were not documented. One Alpine chamois was positive for A. phagocytophilum and B. capreoli. Moreover, an ibex from the Kaunertal region was positive for A. phagocytophilum. While the ibex was a kid less than 1 year old, the chamois was an adult individual. Further research is recommended to evaluate effects of climate change on infection rates of North Tyrolean wild ruminants by these pathogens and the distribution of their vectors. [ABSTRACT FROM AUTHOR]

Since 2001, Pyrenean chamois (Rupicapra pyrenaica pyrenaica) populations have been affected by border disease virus (BDV) causing mortalities of more than 80% in some areas. Field studies carried out in France, Andorra, and Spain have shown different epidemiological scenarios in chamois populations. This study was designed to confirm the presence of BDV strains of a high and low virulence in free‐ranging chamois populations from Pyrenees and to understand the implications of these findings to the diverse epidemiological scenarios. An experimental infection of Pyrenean chamois with a high‐virulence (Cadí‐6) and low‐virulence (Freser‐5) BDV strains was performed. Pregnant and non‐pregnant animals with and without antibodies against BDV were included in each group. Cadí‐6 BDV strain was confirmed to be of high virulence for seronegative adults and their foetuses. The antibody negative chamois infected with Freser‐5 BDV strain did not show symptoms, presented less viral distribution and RNA load in tissues than Cadí‐6 group, and cleared the virus from the serum. However, foetuses died before the end of the experiment and RNA virus was detected in sera and tissues although with lower RNA load than the Cadí‐6 group. Chamois from both groups presented lesions in brain but the ones infected with the low‐virulence Freser‐5 BDV strain were mild and most likely transient. In both groups, seropositive pregnant females and all but one of their foetuses did not present viraemia or viral RNA in tissues. The existence of a low‐virulence strain has been confirmed experimentally and related to chamois population infection dynamics in the area where it was isolated. Such strain may persist in the chamois population through PI animals and may induce cross‐protection in chamois against high‐virulence strains. This study demonstrates that viral strain diversity is a significant factor in the heterogeneity of epidemiological scenarios in Pyrenean chamois populations. [ABSTRACT FROM AUTHOR]