10 results on '"catalytic cysteine residue"'
Search Results
2. Protein Quality Control: Part I—Molecular Chaperones and the Ubiquitin-Proteasome System
- Author
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Beckerman, Martin, Aizawa, Masuo, Series editor, Greenbaum, Elias, Editor-in-chief, Andersen, Olaf S., Series editor, Austin, Robert H., Series editor, Barber, James, Series editor, Berg, Howard C., Series editor, Bloomfield, Victor, Series editor, Callender, Robert, Series editor, Chance, Britton, Series editor, Chu, Steven, Series editor, DeFelice, Louis J., Series editor, Deisenhofer, Johann, Series editor, Feher, George, Series editor, Frauenfelder, Hans, Series editor, Giaever, Ivar, Series editor, Gruner, Sol M., Series editor, Herzfeld, Judith, Series editor, Humayun, Mark S., Series editor, Joliot, Pierre, Series editor, Keszthelyi, Lajos, Series editor, Knox, Robert S., Series editor, Lewis, Aaron, Series editor, Lindsay, Stuart M., Series editor, Mauzerall, David, Series editor, Mielczarek, Eugenie V., Series editor, Niemz, Markolf, Series editor, Parsegian, V. Adrian, Series editor, Powers, Linda S., Series editor, Prohofsky, Earl W., Series editor, Rubin, Andrew, Series editor, Seibert, Michael, Series editor, Thomas, David, Series editor, and Beckerman, Martin
- Published
- 2015
- Full Text
- View/download PDF
3. Inactivation of Protein Tyrosine Phosphatases by Peracids Correlates with the Hydrocarbon Chain Length
- Author
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Alicja Kuban-Jankowska, Magdalena Gorska, Jack A. Tuszynski, Cassandra D. M. Churchill, Philip Winter, Mariusz Klobukowski, and Michal Wozniak
- Subjects
Peracids (peroxyacids, percarboxylic acids) ,Catalytic cysteine residue ,Protein tyrosine phosphatases (PTPs) ,Physiology ,QP1-981 ,Biochemistry ,QD415-436 - Abstract
Background/Aims: Protein tyrosine phosphatases are crucial enzymes controlling numerous physiological and pathophysiological events and can be regulated by oxidation of the catalytic domain cysteine residue. Peracids are highly oxidizing compounds, and thus may induce inactivation of PTPs. The aim of the present study was to evaluate the inhibitory effect of peracids with different length of hydrocarbon chain on the activity of selected PTPs. Methods: The enzymatic activity of human CD45, PTP1B, LAR, bacterial YopH was assayed under the cell-free conditions, and activity of cellular CD45 in human Jurkat cell lysates. The molecular docking and molecular dynamics were performed to evaluate the peracids binding to the CD45 active site. Results: Here we demonstrate that peracids reduce enzymatic activity of recombinant CD45, PTP1B, LAR, YopH and cellular CD45. Our studies indicate that peracids are more potent inhibitors of CD45 than hydrogen peroxide (with an IC50 value equal to 25 nM for peroctanoic acid and 8 µM for hydrogen peroxide). The experimental data show that the inactivation caused by peracids is dependent on hydrocarbon chain length of peracids with maximum inhibitory effect of medium-chain peracids (C8-C12 acyl chain), which correlates with calculated binding affinities to the CD45 active site. Conclusion: Peracids are potent inhibitors of PTPs with the strongest inhibitory effect observed for medium-chain peracids.
- Published
- 2015
- Full Text
- View/download PDF
4. Insights into ascorbate regeneration in plants: investigating the redox and structural properties of dehydroascorbate reductases from Populus trichocarpa.
- Author
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Lallement, Pierre-Alexandre, Roret, Thomas, Tsan, Pascale, Gualberto, José M., Girardet, Jean-Michel, Didierjean, Claude, Rouhier, Nicolas, and Hecker, Arnaud
- Subjects
- *
BLACK cottonwood , *ASCORBATE oxidase , *CYSTEINE metabolism , *NUCLEAR magnetic resonance , *GLUTATHIONE , *REDUCTASE regulation - Abstract
Dehydroascorbate reductases (DHARs), enzymes belonging to the GST superfamily, catalyse the GSH-dependent reduction of dehydroascorbate into ascorbate in plants. By maintaining a reduced ascorbate pool, they notably participate to H2O2 detoxification catalysed by ascorbate peroxidases (APXs). Despite this central role, the catalytic mechanism used by DHARs is still not well understood and there is no supportive 3D structure. In this context, we have performed a thorough biochemical and structural analysis of the three poplar DHARs and coupled this to the analysis of their transcript expression patterns and subcellular localizations. The transcripts for these genes are mainly detected in reproductive and green organs and the corresponding proteins are expressed in plastids, in the cytosol and in the nucleus, but not in mitochondria and peroxisomeswhere ascorbate regeneration is obviously necessary. Comparing the kinetic properties and the sensitivity to GSSG-mediated oxidation of DHAR2 and DHAR3A, exhibiting 1 or 3 cysteinyl residues respectively, we observed that the presence of additional cysteines in DHAR3A modifies the regenerationmechanism of the catalytic cysteine by forming different redox states. Finally, from the 3D structure of DHAR3A solved by NMR, we were able to map the residues important for the binding of both substrates (GSH and DHA), showing that DHAR active site is very selective for DHA recognition and providing further insights into the catalytic mechanism and the roles of the additional cysteines found in some DHARs. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
5. Inactivation of Protein Tyrosine Phosphatases by Peracids Correlates with the Hydrocarbon Chain Length.
- Author
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Kuban-Jankowska, alicja, Gorska, Magdalena, Tuszynski, Jack a., Churchill, Cassandra D. M., Winter, Philip, Klobukowski, Mariusz, and Wozniak, Michal
- Subjects
- *
PROTEIN-tyrosine kinases , *PHOSPHATASES , *ENZYME activation , *CATALYTIC activity , *CD45 antigen - Abstract
Background/Aims: Protein tyrosine phosphatases are crucial enzymes controlling numerous physiological and pathophysiological events and can be regulated by oxidation of the catalytic domain cysteine residue. Peracids are highly oxidizing compounds, and thus may induce inactivation of PTPs. The aim of the present study was to evaluate the inhibitory effect of peracids with different length of hydrocarbon chain on the activity of selected PTPs. Methods: The enzymatic activity of human CD45, PTP1B, LAR, bacterial YopH was assayed under the cell-free conditions, and activity of cellular CD45 in human Jurkat cell lysates. The molecular docking and molecular dynamics were performed to evaluate the peracids binding to the CD45 active site. Results: Here we demonstrate that peracids reduce enzymatic activity of recombinant CD45, PTP1B, LAR, YopH and cellular CD45. Our studies indicate that peracids are more potent inhibitors of CD45 than hydrogen peroxide (with an IC50 value equal to 25 nM for peroctanoic acid and 8 μM for hydrogen peroxide). The experimental data show that the inactivation caused by peracids is dependent on hydrocarbon chain length of peracids with maximum inhibitory effect of medium-chain peracids (C8-C12 acyl chain), which correlates with calculated binding affinities to the CD45 active site. Conclusion: Peracids are potent inhibitors of PTPs with the strongest inhibitory effect observed for medium-chain peracids. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
6. Structural and enzymatic insights into Lambda glutathione transferases from Populus trichocarpa, monomeric enzymes constituting an early divergent class specific to terrestrial plants.
- Author
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LALLEMENT, Pierre-Alexandre, MEUX, Edgar, GUALBERTO, José M., PROSPER, Pascalita, DIDIERJEAN, Claude, SAUL, Frederick, HAOUZ, Ahmed, ROUHIER, Nicolas, and HECKER, Arnaud
- Subjects
- *
GLUTATHIONE transferase , *BLACK cottonwood , *METABOLIC detoxification , *SECONDARY metabolism , *CYSTEINE , *CRYSTAL structure - Abstract
GSTs represent a superfamily of multifunctional proteins which play crucial roles in detoxification processes and secondary metabolism. Instead of promoting the conjugation of glutathione to acceptor molecules as do most GSTs, members of the Lambda class (GSTLs) catalyse deglutathionylation reactions via a catalytic cysteine residue. Three GSTL genes (Pt-GSTL1, Pt- GSTL2 and Pt-GSTL3) are present in Populus trichocarpa, but two transcripts, differing in their 5' extremities, were identified for Pt-GSTL3. Transcripts for these genes were primarily found in flowers, fruits, petioles and buds, but not in leaves and roots, suggesting roles associated with secondary metabolism in these organs. The expression of GFP-fusion proteins in tobacco showed that Pt-GSTL1 is localized in plastids, whereas Pt-GSTL2 and Pt- GSTL3A and Pt-GSTL3B are found in both the cytoplasm and the nucleus. The resolution of Pt-GSTL1 and Pt-GSTL3 structures by X-ray crystallography indicated that, although these proteins adopt a canonical GST fold quite similar to that found in dimeric Omega GSTs, their non-plant counterparts, they are strictly monomeric. Thismight explain some differences in the enzymatic properties of both enzyme types. Finally, from competition experiments between aromatic substrates and a fluorescent probe, we determined that the recognition of glutathionylated substrates is favoured over non-glutathionylated forms. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
7. Inactivation of Protein Tyrosine Phosphatases by Peracids Correlates with the Hydrocarbon Chain Length
- Author
-
Philip Winter, Jack A. Tuszynski, Michal Wozniak, Mariusz Klobukowski, Magdalena M. Gorska, Alicja Kuban-Jankowska, and Cassandra D. M. Churchill
- Subjects
Cell Extracts ,Physiology ,Protein tyrosine phosphatase ,Molecular Dynamics Simulation ,01 natural sciences ,lcsh:Physiology ,law.invention ,Catalytic cysteine residue ,lcsh:Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Jurkat Cells ,law ,Catalytic Domain ,Protein tyrosine phosphatases (PTPs) ,0103 physical sciences ,Humans ,lcsh:QD415-436 ,Peracetic Acid ,Enzyme Inhibitors ,Hydrogen peroxide ,IC50 ,030304 developmental biology ,Enzyme Assays ,chemistry.chemical_classification ,0303 health sciences ,010304 chemical physics ,biology ,lcsh:QP1-981 ,Receptor-Like Protein Tyrosine Phosphatases, Class 2 ,Active site ,Hydrogen Peroxide ,Recombinant Proteins ,Peroxides ,Molecular Docking Simulation ,Kinetics ,Enzyme ,Receptor-Like Protein Tyrosine Phosphatases ,chemistry ,Biochemistry ,Peracids (peroxyacids, percarboxylic acids) ,biology.protein ,Recombinant DNA ,Leukocyte Common Antigens ,Protein Tyrosine Phosphatases ,Cysteine ,Bacterial Outer Membrane Proteins - Abstract
Background/Aims: Protein tyrosine phosphatases are crucial enzymes controlling numerous physiological and pathophysiological events and can be regulated by oxidation of the catalytic domain cysteine residue. Peracids are highly oxidizing compounds, and thus may induce inactivation of PTPs. The aim of the present study was to evaluate the inhibitory effect of peracids with different length of hydrocarbon chain on the activity of selected PTPs. Methods: The enzymatic activity of human CD45, PTP1B, LAR, bacterial YopH was assayed under the cell-free conditions, and activity of cellular CD45 in human Jurkat cell lysates. The molecular docking and molecular dynamics were performed to evaluate the peracids binding to the CD45 active site. Results: Here we demonstrate that peracids reduce enzymatic activity of recombinant CD45, PTP1B, LAR, YopH and cellular CD45. Our studies indicate that peracids are more potent inhibitors of CD45 than hydrogen peroxide (with an IC50 value equal to 25 nM for peroctanoic acid and 8 µM for hydrogen peroxide). The experimental data show that the inactivation caused by peracids is dependent on hydrocarbon chain length of peracids with maximum inhibitory effect of medium-chain peracids (C8-C12 acyl chain), which correlates with calculated binding affinities to the CD45 active site. Conclusion: Peracids are potent inhibitors of PTPs with the strongest inhibitory effect observed for medium-chain peracids.
- Published
- 2015
8. Insights into ascorbate regeneration in plants: investigating the redox and structural properties of dehydroascorbate reductases from Populus trichocarpa
- Author
-
Claude Didierjean, Nicolas Rouhier, Thomas Roret, José M. Gualberto, Jean-Michel Girardet, Pascale Tsan, Pierre-Alexandre Lallement, Arnaud Hecker, Interactions Arbres-Microorganismes (IAM), Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA), Cristallographie, Résonance Magnétique et Modélisations (CRM2), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Institut de biologie moléculaire des plantes (IBMP), Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA), and ANR (ANR-11-LABX-0002-01)
- Subjects
0301 basic medicine ,Models, Molecular ,MESH: Oxidation-Reduction ,Magnetic Resonance Spectroscopy ,Protein Conformation ,Populus trichocarpa ,Ascorbic Acid ,Biochemistry ,MESH: Protein Conformation ,Gene Expression Regulation, Plant ,MESH: Ascorbic Acid ,glutathione ,MESH: Tobacco ,Plant Proteins ,chemistry.chemical_classification ,biology ,MESH: Plant Proteins ,MESH: Gene Expression Regulation, Enzymologic ,dehydroascorbate reductases ,Peroxisome ,Populus ,Ascorbate Peroxidases ,Oxidoreductases ,Oxidation-Reduction ,MESH: Models, Molecular ,ascorbate recycling ,Context (language use) ,Gene Expression Regulation, Enzymologic ,03 medical and health sciences ,Oxidoreductase ,Tobacco ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,MESH: Oxidoreductases ,catalytic cysteine residue ,MESH: Gene Expression Regulation, Plant ,Molecular Biology ,Binding Sites ,MESH: Magnetic Resonance Spectroscopy ,Active site ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Cell Biology ,Ascorbic acid ,Cytosol ,nuclear magnetic resonance ,MESH: Populus ,030104 developmental biology ,chemistry ,MESH: Binding Sites ,biology.protein ,Cysteine - Abstract
International audience; Dehydroascorbate reductases (DHARs), enzymes belonging to the GST superfamily, catalyse the GSH-dependent reduction of dehydroascorbate into ascorbate in plants. By maintaining a reduced ascorbate pool, they notably participate to H2O2 detoxification catalysed by ascorbate peroxidases (APXs). Despite this central role, the catalytic mechanism used by DHARs is still not well understood and there is no supportive 3D structure. In this context, we have performed a thorough biochemical and structural analysis of the three poplar DHARs and coupled this to the analysis of their transcript expression patterns and subcellular localizations. The transcripts for these genes are mainly detected in reproductive and green organs and the corresponding proteins are expressed in plastids, in the cytosol and in the nucleus, but not in mitochondria and peroxisomes where ascorbate regeneration is obviously necessary. Comparing the kinetic properties and the sensitivity to GSSG-mediated oxidation of DHAR2 and DHAR3A, exhibiting 1 or 3 cysteinyl residues respectively, we observed that the presence of additional cysteines in DHAR3A modifies the regeneration mechanism of the catalytic cysteine by forming different redox states. Finally, from the 3D structure of DHAR3A solved by NMR, we were able to map the residues important for the binding of both substrates (GSH and DHA), showing that DHAR active site is very selective for DHA recognition and providing further insights into the catalytic mechanism and the roles of the additional cysteines found in some DHARs.
- Published
- 2016
- Full Text
- View/download PDF
9. Structural and enzymatic insights into Lambda glutathione transferases from Populus trichocarpa, monomeric enzymes constituting an early divergent class specific to terrestrial plants
- Author
-
José M. Gualberto, Pierre-Alexandre Lallement, Edgar Meux, Pascalita Prosper, Nicolas Rouhier, Frederick Saul, Claude Didierjean, Arnaud Hecker, Ahmed Haouz, Interactions Arbres-Microorganismes (IAM), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Institut de biologie moléculaire des plantes (IBMP), Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), Cristallographie, Résonance Magnétique et Modélisations (CRM2), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Cristallographie (Plateforme) - Crystallography (Platform), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Agence Nationale de la Recherche as part of the 'Investissements d'Avenir' programme [grant number ANR-11-LABX-0002-01, Lab of Excellence ARBRE], Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA), Cristallographie (Plate-forme), Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), and Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)
- Subjects
Populus trichocarpa ,Cytoplasm ,Protein Folding ,crystal structure ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,Biology ,Crystallography, X-Ray ,Genes, Plant ,Biochemistry ,Substrate Specificity ,chemistry.chemical_compound ,Transferase ,Plastid ,catalytic cysteine residue ,glutathione ,Secondary metabolism ,Molecular Biology ,Glutathione Transferase ,Cell Nucleus ,chemistry.chemical_classification ,poplar (Populus trichocarpa) ,deglutathionylation ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Cell Biology ,Glutathione ,biology.organism_classification ,Kinetics ,Populus ,Enzyme ,chemistry ,Protein Multimerization ,Lambda GST ,Cysteine - Abstract
International audience; GSTs represent a superfamily of multifunctional proteins which play crucial roles in detoxification processes and secondary metabolism. Instead of promoting the conjugation of glutathione to acceptor molecules as do most GSTs, members of the Lambda class (GSTLs) catalyse deglutathionylation reactions via a catalytic cysteine residue. Three GSTL genes (Pt-GSTL1, Pt-GSTL2 and Pt-GSTL3) are present in Populus trichocarpa, but two transcripts, differing in their 5' extremities, were identified for Pt-GSTL3. Transcripts for these genes were primarily found in flowers, fruits, petioles and buds, but not in leaves and roots, suggesting roles associated with secondary metabolism in these organs. The expression of GFP-fusion proteins in tobacco showed that Pt-GSTL1 is localized in plastids, whereas Pt-GSTL2 and Pt-GSTL3A and Pt-GSTL3B are found in both the cytoplasm and the nucleus. The resolution of Pt-GSTL1 and Pt-GSTL3 structures by X-ray crystallography indicated that, although these proteins adopt a canonical GST fold quite similar to that found in dimeric Omega GSTs, their non-plant counterparts, they are strictly monomeric. This might explain some differences in the enzymatic properties of both enzyme types. Finally, from competition experiments between aromatic substrates and a fluorescent probe, we determined that the recognition of glutathionylated substrates is favoured over non-glutathionylated forms.
- Published
- 2014
- Full Text
- View/download PDF
10. Crystal Structure of the Escherichia coli Peptide Methionine Sulphoxide Reductase at 1.9 Å Resolution
- Author
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Frédérique Tête-Favier, Sandrine Boschi-Muller, Guy Branlant, Saïd Azza, André Aubry, David Cobessi, Laboratoire de Cristallographie et modélisation des matériaux minéraux et biologiques (LCM3B), Université Henri Poincaré - Nancy 1 (UHP)-Centre National de la Recherche Scientifique (CNRS), Institut Gilbert-Laustriat : Biomolécules, Biotechnologie, Innovation Thérapeutique, Université Louis Pasteur - Strasbourg I-Centre National de la Recherche Scientifique (CNRS), and Cristallographie et modélisation des matériaux minéraux et biologiques (CMMMB)
- Subjects
Models, Molecular ,Protein Folding ,Protein Conformation ,MESH: Sequence Homology, Amino Acid ,Sequence Homology ,MESH: Selenomethionine ,MESH: Amino Acid Sequence ,Reductase ,Crystallography, X-Ray ,chemistry.chemical_compound ,MESH: Protein Structure, Tertiary ,Protein structure ,MESH: Protein Conformation ,MESH: Structure-Activity Relationship ,Structural Biology ,Models ,Selenomethionine ,Peptide sequence ,MESH: Bacterial Proteins ,MESH: Evolution, Molecular ,chemistry.chemical_classification ,0303 health sciences ,Crystallography ,biology ,MAD ,MESH: Escherichia coli ,030302 biochemistry & molecular biology ,MsrA ,Amino acid ,Amino Acid ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,Biochemistry ,Oxidoreductases ,MESH: Models, Molecular ,MSRA ,α/β roll ,Protein Structure ,Stereochemistry ,Evolution ,Recombinant Fusion Proteins ,MESH: Protein Folding ,Molecular Sequence Data ,MESH: Sequence Alignment ,Catalysis ,peptide methionine sulphoxide reductase ,Evolution, Molecular ,03 medical and health sciences ,Structure-Activity Relationship ,Bacterial Proteins ,Species Specificity ,Escherichia coli ,MESH: Recombinant Fusion Proteins ,MESH: Species Specificity ,Amino Acid Sequence ,Cysteine ,MESH: Oxidoreductases ,catalytic cysteine residue ,Molecular Biology ,030304 developmental biology ,Methionine ,Binding Sites ,MESH: Molecular Sequence Data ,Sequence Homology, Amino Acid ,Active site ,Molecular ,MESH: Cysteine ,MESH: Catalysis ,MESH: Crystallography, X-Ray ,Protein Structure, Tertiary ,chemistry ,MESH: Binding Sites ,Methionine Sulfoxide Reductases ,biology.protein ,X-Ray ,Sequence Alignment ,Tertiary - Abstract
Background: Peptide methionine sulphoxide reductases catalyze the reduction of oxidized methionine residues in proteins. They are implicated in the defense of organisms against oxidative stress and in the regulation of processes involving peptide methionine oxidation/reduction. These enzymes are found in numerous organisms, from bacteria to mammals and plants. Their primary structure shows no significant similarity to any other known protein. Results: The X-ray structure of the peptide methionine sulphoxide reductase from Escherichia coli was determined at 3 A resolution by the multiple wavelength anomalous dispersion method for the selenomethionine-substituted enzyme, and it was refined to 1.9 A resolution for the native enzyme. The 23 kDa protein is folded into an α/β roll and contains a large proportion of coils. Among the three cysteine residues involved in the catalytic mechanism, Cys-51 is positioned at the N terminus of an α helix, in a solvent-exposed area composed of highly conserved amino acids. The two others, Cys-198 and Cys-206, are located in the C-terminal coil. Conclusions: Sequence alignments show that the overall fold of the peptide methionine sulphoxide reductase from E. coli is likely to be conserved in many species. The characteristics observed in the Cys-51 environment are in agreement with the expected accessibility of the active site of an enzyme that reduces methionine sulphoxides in various proteins. Cys-51 could be activated by the influence of an α helix dipole. The involvement of the two other cysteine residues in the catalytic mechanism requires a movement of the C-terminal coil. Several conserved amino acids and water molecules are discussed as potential participants in the reaction.
- Full Text
- View/download PDF
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