8,881 results on '"cART"'
Search Results
2. Building semi-supervised decision trees with semi-cart algorithm.
- Author
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Abedinia, Aydin and Seydi, Vahid
- Abstract
Decision trees are a fundamental statistical learning tool for addressing classification and regression problems through a recursive partitioning approach that effectively accommodates numerical and categorical data [1-2]. The Classification and regression tree (CART) algorithm underlies modern Boosting methodologies such as Gradient boosting machine (GBM), Extreme gradient boosting (XGBoost), and Light gradient boosting machine (LightGBM). However, the standard CART algorithm may require improvement due to its inability to learn from unlabeled data. This study proposes several modifications to incorporate test data into the training phase. Specifically, we introduce a method based on Graph-based semi-supervised learning called "Distance-based Weighting," which calculates and removes irrelevant records from the training set to accelerate the training process and improve performance. We present Semi-supervised classification and regression tree (Semi-Cart), a new implementation of CART that constructs a decision tree using weighted training data. We evaluated its performance on thirteen datasets from various domains. Our results demonstrate that Semi-Cart outperforms standard CART methods and contributes to statistical learning. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
3. Development of decision tree classification algorithms in predicting mortality of COVID-19 patients.
- Author
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Mohammadi-Pirouz, Zahra, Hajian-Tilaki, Karimollah, Sadeghi Haddat-Zavareh, Mahmoud, Amoozadeh, Abazar, and Bahrami, Shabnam
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RISK assessment , *LEUCOCYTES , *PREDICTION models , *RECEIVER operating characteristic curves , *PATIENTS , *POLYMERASE chain reaction , *STATISTICAL sampling , *LOGISTIC regression analysis , *HOSPITAL admission & discharge , *HOSPITAL care , *HEMOGLOBINS , *RETROSPECTIVE studies , *DESCRIPTIVE statistics , *BLOOD urea nitrogen , *LONGITUDINAL method , *INTUBATION , *INTENSIVE care units , *DECISION trees , *KIDNEY diseases , *ALGORITHMS , *COVID-19 , *SENSITIVITY & specificity (Statistics) , *C-reactive protein ,MORTALITY risk factors - Abstract
Introduction: The accurate prediction of COVID-19 mortality risk, considering influencing factors, is crucial in guiding effective public policies to alleviate the strain on the healthcare system. As such, this study aimed to assess the efficacy of decision tree algorithms (CART, C5.0, and CHAID) in predicting COVID-19 mortality risk and compare their performance with that of the logistic model. Methods: This retrospective cohort study examined 5080 cases of COVID-19 in Babol, a city in northern Iran, who tested positive for the virus via PCR from March 2020 to March 2022. In order to check the validity of the findings, the data was randomly divided into an 80% training set and a 20% testing set. The prediction models, such as Logistic regression models and decision tree algorithms, were trained on the 80% training data and tested on the 20% testing data. The accuracy of these methods for the test samples was assessed using measures like ROC curve, sensitivity, specificity, and AUC. Results: The findings revealed that the mortality rate for COVID-19 patients who were admitted to hospitals was 7.7%. Through cross validation, it was determined that the CHAID algorithm outperformed other decision tree and logistic regression algorithms in specificity, and precision but not sensitivity in predicting the risk of COVID-19 mortality. The CHAID algorithm demonstrated a specificity, precision, accuracy, and F-score of 0.98, 0.70, 0.95, and 0.52 respectively. All models indicated that factors such as ICU hospitalization, intubation, age, kidney disease, BUN, CRP, WBC, NLR, O2 sat, and hemoglobin were among the factors that influenced the mortality rate of COVID-19 patients. Conclusions: The CART and C5.0 models had outperformed in sensitivity but CHAID demonstrates a better performance compared to other decision tree algorithms in specificity, precision, accuracy and shows a slight improvement over the logistic regression method in predicting the risk of COVID-19 mortality in the population under study. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
4. New Therapies and Strategies to Curb HIV Infections with a Focus on Macrophages and Reservoirs.
- Author
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Marra, Maria, Catalano, Alessia, Sinicropi, Maria Stefania, Ceramella, Jessica, Iacopetta, Domenico, Salpini, Romina, Svicher, Valentina, Marsico, Stefania, Aquaro, Stefano, and Pellegrino, Michele
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HIGHLY active antiretroviral therapy , *REVERSE transcriptase inhibitors , *HIV infections , *HIV , *ANTI-HIV agents , *ANTIVIRAL agents - Abstract
More than 80 million people worldwide have been infected with the human immunodeficiency virus (HIV). There are now approximately 39 million individuals living with HIV/acquired immunodeficiency syndrome (AIDS). Although treatments against HIV infection are available, AIDS remains a serious disease. Combination antiretroviral therapy (cART), also known as highly active antiretroviral therapy (HAART), consists of treatment with a combination of several antiretroviral drugs that block multiple stages in the virus replication cycle. However, the increasing usage of cART is inevitably associated with the emergence of HIV drug resistance. In addition, the development of persistent cellular reservoirs of latent HIV is a critical obstacle to viral eradication since viral rebound takes place once anti-retroviral therapy (ART) is interrupted. Thus, several efforts are being applied to new generations of drugs, vaccines and new types of cART. In this review, we summarize the antiviral therapies used for the treatment of HIV/AIDS, both as individual agents and as combination therapies, and highlight the role of both macrophages and HIV cellular reservoirs and the most recent clinical studies related to this disease. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Synergistic effect of chimeric antigen receptor modified with Bcl-2 on enhanced solid tumour targeting.
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Wang, Xiaoyan, Liu, Guodong, Huan, Tian, Wang, Yuxing, Jiang, Bo, Liu, Wei, Dai, Anran, Zhang, Xiangzhi, and Yu, Feng
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EPIDERMAL growth factor receptors ,B cell lymphoma ,TREATMENT effectiveness ,CHIMERIC antigen receptors ,T cells - Abstract
Engineered T cells expressing chimeric antigen receptors (CARs) have shown remarkable therapeutic effects on haematological malignancies. However, CART cells are less effective on solid tumours mainly due to their weak persistence, which might be caused by activation-induced cell death (AICD). To overcome this limitation, CART cell with the antigen, Epidermal growth factor receptor variant III (EGFRvIII), targeting was modified to carry the anti-apoptotic molecule B cell lymphoma 2 (Bcl-2), and the final construct was named as EGFRvIII·CART-Bcl2 cells. Compared with the EGFRvIII·CART cells, EGFRvIII·CART-Bcl2 cells revealed higher capacities of proliferation, anti-apoptosis and tumour cell killing in vitro. Moreover, EGFRvIII·CART-Bcl2 cells had a longer persistence rate and exerted better anti-tumour effects than EGFRvIII·CART cells in cervical carcinoma xenograft model. Taken together, our findings suggest that incorporating anti-apoptotic molecules into CART cells may enhance its therapeutic effects against solid tumours. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Integrating Proteomic Analysis and Machine Learning to Predict Prostate Cancer Aggressiveness.
- Author
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Valle Cortés, Sheila M., Pérez Morales, Jaileene, Nieves Plaza, Mariely, Maldonado, Darielys, Tevenal Baez, Swizel M., Negrón Blas, Marc A., Lazcano Etchebarne, Cayetana, Feliciano, José, Ruiz Deyá, Gilberto, Santa Rosario, Juan C., and Santiago Cardona, Pedro
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EPITHELIAL-mesenchymal transition ,REGRESSION trees ,GLEASON grading system ,EARLY diagnosis ,PROSTATE cancer - Abstract
Prostate cancer (PCa) poses a significant challenge because of the difficulty in identifying aggressive tumors, leading to overtreatment and missed personalized therapies. Although only 8% of cases progress beyond the prostate, the accurate prediction of aggressiveness remains crucial. Thus, this study focused on studying retinoblastoma phosphorylated at Serine 249 (Phospho-Rb S249), N-cadherin, β-catenin, and E-cadherin as biomarkers for identifying aggressive PCa using a logistic regression model and a classification and regression tree (CART). Using immunohistochemistry (IHC), we targeted the expression of these biomarkers in PCa tissues and correlated their expression with clinicopathological data of the tumor. The results showed a negative correlation between E-cadherin and β-catenin with aggressive tumor behavior, whereas Phospho-Rb S249 and N-cadherin positively correlated with increased tumor aggressiveness. Furthermore, patients were stratified based on Gleason scores and E-cadherin staining patterns to evaluate their capability for early identification of aggressive PCa. Our findings suggest that the classification tree is the most effective method for measuring the utility of these biomarkers in clinical practice, incorporating β-catenin, tumor grade, and Gleason grade as relevant determinants for identifying patients with Gleason scores ≥ 4 + 3. This study could potentially benefit patients with aggressive PCa by enabling early disease detection and closer monitoring. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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7. DDOS ATTACKS DETECTION USING DIFFERENT DECISION TREE ALGORITHMS.
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DAYANANDAM, G., REDDY, E. SRINIVASA, and BABU, D. BUJJI
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MACHINE learning ,CART algorithms ,DENIAL of service attacks ,BANKING industry ,INSURANCE companies ,DECISION trees - Abstract
In today's world, the banking sector, government organizations, and various users in the finance and insurance sectors have grown exponentially. In such situations, they become primary targets for attackers. The main focus of these attackers is to disrupt services for legitimate users. Recently, attackers have targeted banks in Ukraine during the Russia-Ukraine war, causing a shortage of money in banks and making it difficult for people to withdraw funds. These types of attacks fall under the category of Distributed Denial of Service (DDoS) attacks. The primary objectives of these DDoS attacks are to gain financial control and damage the reputation of the affected organization or country. The purpose of this paper is to detect DDoS attacks using various Decision Tree Classifiers in Machine Learning algorithms. We utilized the 'caret' package in R, which is well-known for its Classification and Regression Techniques. We split the KDD'99 dataset based on the outcome variable. We employed the 'rpart' method to classify the dataset using CART and C4.5 algorithms. Experimental results indicate that our classification methods achieve a better accuracy rate compared to other decision tree methods. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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8. Management of relapsed/refractory mantle cell lymphoma.
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Alzahrani, Musa and Villa, Diego
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BRUTON tyrosine kinase , *BISPECIFIC antibodies , *ANTIBODY-drug conjugates , *CHIMERIC antigen receptors , *PROTEIN-tyrosine kinase inhibitors , *MANTLE cell lymphoma - Abstract
In this review we summarize the current evidence describing the management of patients with relapsed/refractory MCL and outline the various novel therapeutics that have been developed over the past two decades. We also describe how overall response rates, complete response rates, duration of responses, and life expectancy have dramatically increased with the introduction of novel therapies, particularly covalent Bruton Tyrosine Kinase inhibitors (BTKi) and chimeric antigen receptor T-cell (CAR-T) therapy. The most recent emerging options for patients with progressive disease following BTKi or CAR-T, including non-covalent BTKi, antibody-drug conjugates, Bcl-2 inhibitors, and bispecific antibodies, may further improve response rates and outcomes. Future directions should focus on identifying the best sequencing and/or combinations of the increasingly available treatment options while prioritizing strategies with curative potential. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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9. Cocaine and amphetamine‐regulated transcript improves myocardial ischemia–reperfusion injury through PI3K/AKT signalling pathway.
- Author
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Wang, Yachen, Wang, Ziwei, Peng, Zeyan, Feng, Lifeng, Tian, Wencong, Zhang, Shengzheng, Cao, Lei, Li, Jing, Yang, Liang, Xu, Yang, Gao, Yang, Liu, Jie, Yan, Jie, Ma, Xiaodong, Sun, Wangchun, Guo, Lihong, Li, Xuan, Shen, Yanna, and Qi, Zhi
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PI3K/AKT pathway , *CELLULAR signal transduction , *REPERFUSION injury , *MYOCARDIAL infarction , *APOPTOSIS inhibition , *PAIN clinics - Abstract
Myocardial ischemia–reperfusion injury (MIRI) is a common clinic scenario that occurs in the context of reperfusion therapy for acute myocardial infarction. It has been shown that cocaine and amphetamine‐regulated transcript (CART) can ameliorate cerebral ischemia–reperfusion (I/R) injury, but the effect of CART on MIRI has not been studied yet. Here, we revealed that CART protected the heart during I/R process by inhibiting apoptosis and excessive autophagy, indicating that CART would be a potential drug candidate for the treatment of MIRI. Further analysis showed that CART upregulated the activation of phospho‐AKT, leading to downregulation of lactate dehydrogenase (LDH) release, apoptosis, oxidative stress and excessive autophagy after I/R, which was inhibited by PI3K inhibitor, LY294002. Collectively, CART attenuated MIRI through inhibition of cardiomyocytes apoptosis and excessive autophagy, and the protective effect was dependent on PI3K/AKT signalling pathway. [ABSTRACT FROM AUTHOR]
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- 2024
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10. Potential and performance for classifying Earth surface only with ICESat-2 altimetric data.
- Author
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Sun, Yuan, Xie, Huan, Wang, Chunhui, Luan, Kuifeng, Liu, Shijie, Li, Binbin, Xu, Qi, Huang, Peiqi, Liu, Changda, Ji, Min, and Tong, Xiaohua
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SURFACE of the earth , *CART algorithms , *SEA ice , *ANTARCTIC ice , *VISUAL fields , *LAND cover - Abstract
The huge volume of data from the Ice, Cloud and land Elevation Satellite-2 (ICESat-2), designed for mapping polar ice, sea ice, and continental vegetation, requires a highly automated data analysis and reliable terrain classification. In particular, we have developed a method to identify 4 distinct terrain categories in observed terrain, namely ocean, land, sea ice, and ice sheets. This study performed the following efforts: first, the spatial distribution characteristics for each of the 4 categories within individual ICESat-2 "major frames" along the orbit were extracted; second, these features were fed into Classification and Regression Tree (CART) and Random Forest (RF) for training; and lastly, post-processing enhancement was used to improve the classification results. Based on the 76,891 major frame samples (10,764,740 m along track) acquired via various ICESat-2 datasets, the accuracy of the two model were calculated using ten-fold cross-validation. The results indicate that the RF algorithm obtained higher classification accuracy (average accuracy [AA] = 0.9353, overall accuracy [OA] = 0.9342, and Cohen's Kappa coefficient [kappa] = 0.9122) when compared with the CART algorithm (AA = 0.9066, OA = 0.9057, and kappa = 0.8743). Overall, our approach can effectively reduce the workload of human field investigation or visual inspection of altimetry data, improve the accuracy for Earth surface classification, and add to the variety of ways to obtain global surface information from ICESat-2 data. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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11. Cancer treatments: Past, present, and future.
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Sonkin, Dmitriy, Thomas, Anish, and Teicher, Beverly A.
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CANCER genetics , *CANCER treatment , *RADIOTHERAPY , *CANCER chemotherapy , *ONCOLOGY - Abstract
• History of cancer treatments. • The current landscape of cancer treatments. • Potential future cancer therapies. There is a rich history of cancer treatments which provides a number of important lessons for present and future cancer therapies. We outline this history by looking in the past, reviewing the current landscape of cancer treatments, and by glancing at the potential future cancer therapies. [ABSTRACT FROM AUTHOR]
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- 2024
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12. Development of a Novel Prediction Model for Interface Shear Strength in Asphalt Pavement Using the CART Model.
- Author
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Al-Jarazi, Rabea, Rahman, Ali, Ai, Changfa, Li, Chaoyang, and Al-Huda, Zaid
- Abstract
Interface bonding between asphalt layers plays a vital role in ensuring the proper functionality of pavement structures. Interlayer Shear Strength (ISS) is recognized as an indicator quantifying the interface bonding quality. Consequently, accurate evaluation and prediction of the ISS is imperative in determining the performance of asphalt pavement structures. By conducting laboratory experiments and employing machine learning (ML) techniques, this research aims to predict and assess the ISS in asphalt pavement. In this regard, the classification and regression trees (CART) model was proposed based on measured data collected from laboratory experiments. Three experimental factors of curing temperature, normal stress, and tack coat application rate were selected as variables. The findings showed that the developed CART model explained over 98% of the experimental data in a relatively short period. The curing temperature was found to have the most significant influence on the ISS, followed by normal stress and tack coat dosage. Moreover, a parametric analysis of the interaction effects of input parameters on the ISS revealed that higher curing temperature and lower normal stress reduced the ISS. In contrast, a high tack coat application rate and low normal stress corresponded to a lower ISS of the asphalt pavement. The outcomes of this study could pave the way for the realization of a reliable and efficient design of interlayer bonding between asphalt pavement layers. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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13. Spatio‐temporal analysis of snow depth and snow water equivalent in a mountainous catchment: Insights from in‐situ observations and statistical modelling.
- Author
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Çitgez, Tarık, Eker, Remzi, and Aydın, Abdurrahim
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SNOW surveys ,FOREST canopy gaps ,STANDARD deviations ,SNOWMELT ,FOREST canopies - Abstract
This research, conducted in the mountainous catchment near Abant Lake in the Western Black Sea region of Türkiye, aimed to investigate the spatiotemporal variations of snow depth (SD) and snow water equivalent (SWE) throughout the snow season from December 2019 to March 2020, encompassing both accumulation and melting periods. In total, 14 snow surveys were conducted, covering 58 permanent snow measurement points (PSMP) marked with snow poles. The classification and regression tree (CART) method was employed to statistically analyse their relationships with eight variables: snow period, forest canopy, aspect, slope, elevation, slope position, plan and profile curvature. The root mean square error (RMSE) for SD and SWE was determined to be 0.15 m and 46 mm, respectively. The study findings revealed that mean SD and SWE values were higher in forest gaps compared with under‐forest and open areas. Although the snow cover disappeared earliest in under‐forest areas, the melting rate was observed to be 43% and 17% slower compared with forest gaps and open areas, respectively. Wind redistribution resulted in minimum snow accumulation on western aspects, upper slope positions and ridges, while maximum accumulation was observed on southern aspects, valleys and lower slope positions. Higher elevations (>1580 meters) experienced faster snow melting rates, leading to earlier disappearance of snow cover. PSMPs located on slopes with lower degrees (<15°) exhibited lesser accumulation and earlier snow disappearance. The CART model identified the snow period as the most significant factor in predicting SD and SWE, based on variations in snowfall and air temperature. Other significant variables included forest canopy, aspect and elevation. The study suggests that the CART method is well‐suited for modelling complex snow dynamics, providing valuable insights into spatiotemporal variations in SD and SWE in mountainous regions. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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14. Development of decision tree classification algorithms in predicting mortality of COVID-19 patients
- Author
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Zahra Mohammadi-Pirouz, Karimollah Hajian-Tilaki, Mahmoud Sadeghi Haddat-Zavareh, Abazar Amoozadeh, and Shabnam Bahrami
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Decision tree ,CART ,C5.0 ,CHAID ,Logistic regression ,COVID-19 mortality ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Introduction The accurate prediction of COVID-19 mortality risk, considering influencing factors, is crucial in guiding effective public policies to alleviate the strain on the healthcare system. As such, this study aimed to assess the efficacy of decision tree algorithms (CART, C5.0, and CHAID) in predicting COVID-19 mortality risk and compare their performance with that of the logistic model. Methods This retrospective cohort study examined 5080 cases of COVID-19 in Babol, a city in northern Iran, who tested positive for the virus via PCR from March 2020 to March 2022. In order to check the validity of the findings, the data was randomly divided into an 80% training set and a 20% testing set. The prediction models, such as Logistic regression models and decision tree algorithms, were trained on the 80% training data and tested on the 20% testing data. The accuracy of these methods for the test samples was assessed using measures like ROC curve, sensitivity, specificity, and AUC. Results The findings revealed that the mortality rate for COVID-19 patients who were admitted to hospitals was 7.7%. Through cross validation, it was determined that the CHAID algorithm outperformed other decision tree and logistic regression algorithms in specificity, and precision but not sensitivity in predicting the risk of COVID-19 mortality. The CHAID algorithm demonstrated a specificity, precision, accuracy, and F-score of 0.98, 0.70, 0.95, and 0.52 respectively. All models indicated that factors such as ICU hospitalization, intubation, age, kidney disease, BUN, CRP, WBC, NLR, O2 sat, and hemoglobin were among the factors that influenced the mortality rate of COVID-19 patients. Conclusions The CART and C5.0 models had outperformed in sensitivity but CHAID demonstrates a better performance compared to other decision tree algorithms in specificity, precision, accuracy and shows a slight improvement over the logistic regression method in predicting the risk of COVID-19 mortality in the population under study.
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- 2024
- Full Text
- View/download PDF
15. ASSESSMENT OF WATER REQUIREMENT THROUGH STRUCTURAL EQUATION MODELING AND DECISION TREES IN URBAN HOUSEHOLDS
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K. P. Samal, K. Sama, M. Mohanty, and D. K. Bera
- Subjects
access of water ,cart ,structural equation modeling ,urban households ,water inequity ,Mathematics ,QA1-939 - Abstract
The study conducts exhaustive field surveys in 67 wards in Bhubaneswar city, Odisha. 29 factors under 10 aspects have been considered for the study to assess the water requirement per household per day. SEM and CART modeling have been used to estimate the water requirement. The SEM model predicts that 4 aspects, namely, expenses, governance, possession, and resources are the major aspects that decide the water requirement of a household. Similarly, construction and repair costs, energy consumption, reinforcement practices, awareness, presence of a garden, presence of washing machine, presence of other appliances, water charges, and the type of storage majorly affect the water requirement. CART predicts energy consumption, storage, construction and repair, and washing machines to be important estimators with MAPE < 1% for the prediction of water requirement. The study reveals that with proper governance and proper use of water-intensive appliances, the required quantity of water can be decreased in any household. Secondly, by abiding by certain rules while using washing machines, like using them daily or weekly two times, etc., the inequity of water among households can be reduced.
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- 2024
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16. Machine collaboration.
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Liu, Qingfeng and Feng, Yang
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SUPERVISED learning , *BOOSTING algorithms , *ARTIFICIAL neural networks , *MACHINE tools , *MACHINERY , *REGRESSION trees - Abstract
We propose a new ensemble framework for supervised learning, called machine collaboration (MaC), using a collection of possibly heterogeneous base learning methods (hereafter, base machines) for prediction tasks. Unlike bagging/stacking (a parallel and independent framework) and boosting (a sequential and top‐down framework), MaC is a type of circular and recursive learning framework. The circular and recursive nature helps the base machines to transfer information circularly and update their structures and parameters accordingly. The theoretical result on the risk bound of the estimator from MaC reveals that the circular and recursive feature can help MaC reduce risk via a parsimonious ensemble. We conduct extensive experiments on MaC using both simulated data and 119 benchmark real datasets. The results demonstrate that in most cases, MaC performs significantly better than several other state‐of‐the‐art methods, including classification and regression trees, neural networks, stacking, and boosting. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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17. Development of Anti-HIV Therapeutics: From Conventional Drug Discovery to Cutting-Edge Technology.
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Sun, Yaping and Wang, Lingyun
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DRUG discovery , *HIV infections , *HIV , *ANTI-HIV agents , *GENOME editing - Abstract
The efforts to discover HIV therapeutics have continued since the first human immunodeficiency virus (HIV) infected patient was confirmed in the 1980s. Ten years later, the first HIV drug, zidovudine (AZT), targeting HIV reverse transcriptase, was developed. Meanwhile, scientists were enlightened to discover new drugs that target different HIV genes, like integrase, protease, and host receptors. Combination antiretroviral therapy (cART) is the most feasible medical intervention to suppress the virus in people with HIV (PWH) and control the epidemic. ART treatment has made HIV a chronic infection rather than a fatal disease, but ART does not eliminate latent reservoirs of HIV-1 from the host cells; strict and life-long adherence to ART is required for the therapy to be effective in patients. In this review, we first discussed the scientific history of conventional HIV drug discovery since scientists need to develop more and more drugs to solve drug-resistant issues and release the side effects. Then, we summarized the novel research technologies, like gene editing, applied to HIV treatment and their contributions to eliminating HIV as a complementary therapy. [ABSTRACT FROM AUTHOR]
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- 2024
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18. Extracellular vesicle isolation methods identify distinct HIV‐1 particles released from chronically infected T‐cells.
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Molnar, Sebastian M., Kim, Yuriy, Wieczorek, Lindsay, Williams, Anastasia, Patil, Kajal Ashok, Khatkar, Pooja, Santos, Mark F., Mensah, Gifty, Lorico, Aurelio, Polonis, Victoria R., and Kashanchi, Fatah
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EXTRACELLULAR vesicles , *HIV , *PARTICLE size distribution , *VIRAL envelopes , *PARTICLE analysis , *T cells - Abstract
The current study analyzed the intersecting biophysical, biochemical, and functional properties of extracellular particles (EPs) with the human immunodeficiency virus type‐1 (HIV‐1) beyond the currently accepted size range for HIV‐1. We isolated five fractions (Frac‐A through Frac‐E) from HIV‐infected cells by sequential differential ultracentrifugation (DUC). All fractions showed a heterogeneous size distribution with median particle sizes greater than 100 nm for Frac‐A through Frac‐D but not for Frac‐E, which contained small EPs with an average size well below 50 nm. Synchronized and released cultures contained large infectious EPs in Frac‐A, with markers of amphisomes and viral components. Additionally, Frac‐E uniquely contained EPs positive for CD63, HSP70, and HIV‐1 proteins. Despite its small average size, Frac‐E contained membrane‐protected viral integrase, detectable only after SDS treatment, indicating that it is enclosed in vesicles. Single particle analysis with dSTORM further supported these findings as CD63, HIV‐1 integrase, and the viral surface envelope (Env) glycoprotein (gp) colocalized on the same Frac‐E particles. Surprisingly, Frac‐E EPs were infectious, and infectivity was significantly reduced by immunodepleting Frac‐E with anti‐CD63, indicating the presence of this protein on the surface of infectious small EPs in Frac‐E. To our knowledge, this is the first time that extracellular vesicle (EV) isolation methods have identified infectious small HIV‐1 particles (smHIV‐1) that are under 50 nm. Collectively, our data indicate that the crossroads between EPs and HIV‐1 potentially extend beyond the currently accepted biophysical properties of HIV‐1, which may have further implications for viral pathogenesis. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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19. Satellite-Based Crop Typology Mapping with Google Earth Engine †.
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Renuka, Alapati, Suneetha, Manne, and Vasavi, Prathipati
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AGRICULTURAL remote sensing ,CROP management ,SUPPORT vector machines ,REMOTE-sensing images ,FARM management - Abstract
Crop classification plays a pivotal role in agricultural remote sensing, offering critical insights into planting areas, growth monitoring, and yield evaluation. Leveraging the power of Google Earth Engine, this paper centers on the agricultural landscape of Krishna District as its study region. It explores the efficacy of multiple machine learning approaches, specifically Random Forest (RF), Classification and Regression Tree (CART), Naive Bayes, and Support Vector Machine (SVM), in composition of Sentinel-1 and Sentinel-2 satellite imagery for crop categorization. By meticulously assessing and contrasting the evaluations of these four classification methods, the results highlight the efficacy of RF. The overall accuracy (OA) regarding RF classification reaches 0.86, surpassing the results obtained by Naive Bayes (OA = 0.68), CART (OA = 0.63), and SVM (OA = 0.78). This scalable and straightforward classification methodology harnesses the advantages of cloud-based platforms for data handling and analysis. The timely and precise identification in crop typing holds immense importance for monitoring alterations in harvest patterns, estimating yields, and issuing crop safety alerts in the Krishna District and beyond. This paper contributes to the agricultural geospatial sensing domain by providing an innovative approach for accurate crop classification, with broad applications in precision farming and crop management. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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20. Agricultural Drought Model Based on Machine Learning Cubist Algorithm and Its Evaluation.
- Author
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Sha, Sha, Wang, Lijuan, Hu, Die, Ren, Yulong, Wang, Xiaoping, and Zhang, Liang
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MACHINE learning ,CLIMATIC zones ,METEOROLOGICAL precipitation ,TECHNOLOGICAL innovations ,AGRICULTURE - Abstract
Soil moisture is the most direct evaluation index for agricultural drought. It is not only directly affected by meteorological conditions such as precipitation and temperature but is also indirectly influenced by environmental factors such as climate zone, surface vegetation type, soil type, elevation, and irrigation conditions. These influencing factors have a complex, nonlinear relationship with soil moisture. It is difficult to accurately describe this non-linear relationship using a single indicator constructed from meteorological data, remote sensing data, and other data. It is also difficult to fully consider environmental factors using a single drought index on a large scale. Machine learning (ML) models provide new technology for nonlinear problems such as soil moisture retrieval. Based on the multi-source drought indexes calculated by meteorological, remote sensing, and land surface model data, and environmental factors, and using the Cubist algorithm based on a classification decision tree (CART), a comprehensive agricultural drought monitoring model at 10 cm, 20 cm, and 50 cm depth in Gansu Province is established. The influence of environmental factors and meteorological factors on the accuracy of the comprehensive model is discussed, and the accuracy of the comprehensive model is evaluated. The results show that the comprehensive model has a significant improvement in accuracy compared to the single variable model, which is a decrease of about 26% and 28% in RMSE and MAPE, respectively, compared to the best MCI model. Environmental factors such as season, DEM, and climate zone, especially the DEM, play a crucial role in improving the accuracy of the integrated model. These three environmental factors can comprehensively reduce the average RMSE of the comprehensive model by about 25%. Compared to environmental factors, meteorological factors have a slightly weaker effect on improving the accuracy of comprehensive models, which is a decrease of about 6.5% in RMSE. The fitting accuracy of the comprehensive model in humid and semi-humid areas, as well as semi-arid and semi-humid areas, is significantly higher than that in arid and semi-arid areas. These research results have important guiding significance for improving the accuracy of agricultural drought monitoring in Gansu Province. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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21. A supervised learning tool for heatwave predictions using daily high summer temperatures.
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Iqbal, Gazi Md Daud, Rosenberger, Jay, Rosenberger, Matthew, Alam, Muhammad Shah, Ha, Lidan, Anoruo, Emmanuel, Gregory, Sadie, and Mazzone, Tom
- Abstract
Global temperature is increasing at an alarming rate, which increases the number of heatwaves. Heatwaves have significant impacts, both directly and indirectly, on human and natural systems and can create considerable risk to public health. Predicting the occurrence of a heatwave can save lives, increase the production of crops, improve water quality, and reduce transportation restrictions. Because of its geographical location, Bangladesh is particularly vulnerable to cyclones, droughts, earthquakes, floods, and heatwaves. The Bangladesh Meteorological Department collects temperature data at multiple weather stations, and we use data from 10 weather stations in this research. Data show that most heatwaves occur in the summer months, namely, April, May, and June. In this research, we develop Classification and Regression Tree (CART) models that use daily temperature data for the months of March, April, May, and June to predict the likelihood of a heatwave within the next 7 days, the next 28 days, and on any particular day based on daily high temperatures from the previous 14 days. We also use different model parameters to evaluate the accuracy of the models. Finally, we develop treed Stepwise Logistic Regression models to predict the probability of heatwaves occurring. Even though this research uses data from Bangladesh Meteorological Department, the developed modeling approach can be used in other geographic regions. [ABSTRACT FROM AUTHOR]
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- 2024
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22. Risk factors analysis of semiconductor components based on CART.
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Ma, Bing, Chen, Lihua, Zhang, Wenbo, and Li, Aihua
- Abstract
Semiconductor chip is the core of the digital economy, has important strategic significance, in recent years, the global semiconductor market size is growing rapidly. At present, the domestic semiconductor industry is still in the late stage relative to the leading enterprises with first-mover advantages, and is in urgent need of rapid and stable development. The international and domestic semiconductor market has been analysed and focuses on the opportunities and challenges currently facing the domestic semiconductor industry. Based on the semiconductor component risk assessment data, the risk value of semiconductor components is modelled and analysed from a microscopic point of view using the CART regression tree method in data mining, and the model accuracy is further verified and improved by XGBoost, which analyses the microscopic influencing factors of semiconductor component risk, and is an important revelation for the construction of a complete semiconductor component risk prediction mechanism in China. [ABSTRACT FROM AUTHOR]
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- 2024
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23. Occurrence of fever in cell-free and concentrated ascites reinfusion therapy is not related to the primary disease or nature of ascites.
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Fukunaga, Shohei, Egawa, Masahiro, Ito, Takafumi, and Tanabe, Kazuaki
- Abstract
Cell-free and concentrated ascites reinfusion therapy (CART) is a treatment for refractory ascites wherein filtered and concentrated ascitic fluid is reinfused. Although fever is one of the side effects of CART, its cause is not clear. Patients who underwent at least one CART session between June 2011 and May 2021 at our medical center were retrospectively enrolled in the study. They were classified according to the primary disease and nature of ascites. Ninety patients were included in this study. Increase in body temperature (BT) after CART was observed, regardless of the primary disease and nature of ascites. The difference in temperature before and after CART did not differ based on the primary disease [cancerous (including hepatocellular carcinoma, ovarian cancer) and non-cancerous] and nature of ascites. Elevated BT and fever after CART are not related to the primary disease and nature of the ascites. [ABSTRACT FROM AUTHOR]
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- 2024
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24. Machine Learning Aided Optimization of P1 Laser Scribing Process on Indium Tin Oxide Substrates.
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Karade, Vijay C., Kim, Saewoong, Jeong, Inyoung, Ko, Min Jae, Park, Joo Hyung, Cho, Jun‐Sik, Hwang, Inchan, Gwak, Jihye, Sutar, Santosh S., Dongale, Tukaram D., Yun, Jae Ho, Kim, Kihwan, and Eo, Young‐Joo
- Subjects
INDIUM tin oxide ,MACHINE learning ,ATOMIC force microscopy ,SCANNING electron microscopes ,OPTICAL microscopes ,OPTICAL measurements - Abstract
Present study employes a picosecond laser (532 nm) for selective P1 laser scribing on the indium tin oxide (ITO) layer and subsequent fine‐tuning of P1 scribing conditions with machine learning (ML) techniques. Initially, the scribing is performed by varying different laser parameters and further evaluate them via an optical microscope and two probe resistivity measurements. The corresponding scribing width and sheet resistance data are used as input databases for ML analysis. The classification and regression tree (CART)‐based ML analysis revealed that median pulse energy <5.7 μJ insufficient to separate the adjacent scribing regions. While pulse energy >5.7 μJ, APL > 35%, LSO > 46%, and processing speed ≥1250 mm s−1 gives ≥16 μm of scribing width. Further, the decision tree (DT) analysis showed that pulse energy of ≥8.1 μJ, and LSO ≥ 37% are required for electrically isolated lines. The feature importance score suggests that laser fluence and pulse energy determined the scribing width, whereas electrical isolation strongly depends on LSO and processing speed. Finally, the ML achieved conditions experimentally validated and reassessed via scanning electron microscope, and atomic force microscopy aligns well with optical microscope measurements. [ABSTRACT FROM AUTHOR]
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- 2024
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25. POU6F2, a risk factor for glaucoma, myopia and dyslexia, labels specific populations of retinal ganglion cells.
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Lin, Fangyu, Li, Ying, Wang, Jiaxing, Jardines, Sandra, King, Rebecca, Chrenek, Micah A., Wiggs, Janey L., Boatright, Jeffrey H., and Geisert, Eldon E.
- Abstract
Pou6f2 is a genetic connection between central corneal thickness (CCT) in the mouse and a risk factor for developing primary open-angle glaucoma. POU6F2 is also a risk factor for several conditions in humans, including glaucoma, myopia, and dyslexia. Recent findings demonstrate that POU6F2-positive retinal ganglion cells (RGCs) comprise a number of RGC subtypes in the mouse, some of which also co-stain for Cdh6 and Hoxd10. These POU6F2-positive RGCs appear to be novel of ON–OFF directionally selective ganglion cells (ooDSGCs) that do not co-stain with CART or SATB2 (typical ooDSGCs markers). These POU6F2-positive cells are sensitive to damage caused by elevated intraocular pressure. In the DBA/2J mouse glaucoma model, heavily-labeled POU6F2 RGCs decrease by 73% at 8 months of age compared to only 22% loss of total RGCs (labeled with RBPMS). Additionally, Pou6f2−/− mice suffer a significant loss of acuity and spatial contrast sensitivity along with an 11.4% loss of total RGCs. In the rhesus macaque retina, POU6F2 labels the large parasol ganglion cells that form the magnocellular (M) pathway. The association of POU6F2 with the M-pathway may reveal in part its role in human glaucoma, myopia, and dyslexia. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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26. Better trees: an empirical study on hyperparameter tuning of classification decision tree induction algorithms.
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Gomes Mantovani, Rafael, Horváth, Tomáš, Rossi, André L. D., Cerri, Ricardo, Barbon Junior, Sylvio, Vanschoren, Joaquin, and Carvalho, André C. P. L. F. de
- Subjects
DECISION trees ,MACHINE learning ,ALGORITHMS ,EMPIRICAL research ,MATHEMATICAL optimization ,CLASSIFICATION - Abstract
Machine learning algorithms often contain many hyperparameters whose values affect the predictive performance of the induced models in intricate ways. Due to the high number of possibilities for these hyperparameter configurations and their complex interactions, it is common to use optimization techniques to find settings that lead to high predictive performance. However, insights into efficiently exploring this vast space of configurations and dealing with the trade-off between predictive and runtime performance remain challenging. Furthermore, there are cases where the default hyperparameters fit the suitable configuration. Additionally, for many reasons, including model validation and attendance to new legislation, there is an increasing interest in interpretable models, such as those created by the decision tree (DT) induction algorithms. This paper provides a comprehensive approach for investigating the effects of hyperparameter tuning for the two DT induction algorithms most often used, CART and C4.5. DT induction algorithms present high predictive performance and interpretable classification models, though many hyperparameters need to be adjusted. Experiments were carried out with different tuning strategies to induce models and to evaluate hyperparameters' relevance using 94 classification datasets from OpenML. The experimental results point out that different hyperparameter profiles for the tuning of each algorithm provide statistically significant improvements in most of the datasets for CART, but only in one-third for C4.5. Although different algorithms may present different tuning scenarios, the tuning techniques generally required few evaluations to find accurate solutions. Furthermore, the best technique for all the algorithms was the Irace. Finally, we found out that tuning a specific small subset of hyperparameters is a good alternative for achieving optimal predictive performance. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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27. Sustainability Assessment of Machinery Safety in a Manufacturing Organization Using AHP and CART Methods.
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Pačaiová, Hana, Turisová, Renáta, Glatz, Juraj, and Onofrejová, Daniela
- Abstract
Machine safety is not only a prerequisite for successful production but also the foundation for the sustainability and growth of any manufacturing organization. The latest approaches in this rapidly developing field integrate effective risk management tools and strategies into occupational health and safety (OHS) management systems. The study, through a real example from practice, describes the use of the analytic hierarchy process (AHP) method for machine safety improvement, considering the possible types of losses. Classification and Regression Tree Analysis (CART) was applied to assess the efficiency, cost-effectiveness, and, therefore, the overall sustainability level of the relevant safety measures. These were proposed risk reduction measures that typically raised uncertainty among managers regarding the estimation of cost-effectiveness. The advantage of the application decision tree approach is the possibility to identify and establish relatively homogeneous groups of undesirable events and their impact on the organization's objectives. A comprehensive model has been developed to support management decision making in manufacturing organizations towards implementing and improving safety measures in line with manufacturing sustainability goals. [ABSTRACT FROM AUTHOR]
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- 2024
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28. The influence of climatic and human-induced factors on the spatial distribution of invasive plant species richness across the Loess Plateau
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Guan Liu, Ying Liu, Yueni Zhang, Jinghua Huang, Guoqing Li, and Sheng Du
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Loess Plateau ,Invasive plant species ,Plant species richness ,Spatial distribution pattern ,Influencing factors ,CART ,Ecology ,QH540-549.5 - Abstract
Biological invasion poses a critical global issue, leading to substantial detrimental impacts on biodiversity, the environment, and the economy. The objective of the study is to offer a thorough understanding of how both climatic and human-induced elements impact the geographic richness of invasive plant species across the Loess Plateau. We evaluate the distribution of invasive plant species at the county level across the Loess Plateau by examining herbarium records from China. We incorporate 16 climatic and anthropogenic variables to depict the local environmental settings. Furthermore, we apply a classification and regression tree approach to investigate the correlation between the richness of invasive plant species and the identified factors. Our study demonstrates that a total of 401 invasive plant species are identified, which are spread across 249 genera and 61 families. Among these, the Asteraceae family stands out as the most prevalent, trailed by Poaceae and Fabaceae. The spatial distribution of invasive plant species richness reveals a notable trend, with the highest frequencies found in the southeastern parts of the region and the lowest in the northwestern areas. It is noteworthy that regions with higher levels of economic advancement tend to harbor a more significant abundance of invasive plant species. The richness of invasive plant species on the Loess Plateau is predominantly shaped by a combination of climatic and human variables, such as annual precipitation, gross domestic product, maximum temperature of warmest month, and minimum temperature of coldest month. To fully comprehend the ecological and biological mechanisms underlying the diversity of invasive plant species on the Loess Plateau, a pioneering conceptual framework has been established. Our study suggests that achieving a harmonious equilibrium among development, conservation, and invasion mitigation is essential for recognizing emerging risks associated with habitat alterations, climate change, and socio-economic advancements in arid regions.
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- 2024
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29. Behavior Tree Generation Study for Multi-agent
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Li, Jingyi, Su, Jian, Gu, Qijia, Wang, Shengchun, Liu, Meili, Dong, Zhaoxuan, Angrisani, Leopoldo, Series Editor, Arteaga, Marco, Series Editor, Chakraborty, Samarjit, Series Editor, Chen, Shanben, Series Editor, Chen, Tan Kay, Series Editor, Dillmann, Rüdiger, Series Editor, Duan, Haibin, Series Editor, Ferrari, Gianluigi, Series Editor, Ferre, Manuel, Series Editor, Jabbari, Faryar, Series Editor, Jia, Limin, Series Editor, Kacprzyk, Janusz, Series Editor, Khamis, Alaa, Series Editor, Kroeger, Torsten, Series Editor, Li, Yong, Series Editor, Liang, Qilian, Series Editor, Martín, Ferran, Series Editor, Ming, Tan Cher, Series Editor, Minker, Wolfgang, Series Editor, Misra, Pradeep, Series Editor, Mukhopadhyay, Subhas, Series Editor, Ning, Cun-Zheng, Series Editor, Nishida, Toyoaki, Series Editor, Oneto, Luca, Series Editor, Panigrahi, Bijaya Ketan, Series Editor, Pascucci, Federica, Series Editor, Qin, Yong, Series Editor, Seng, Gan Woon, Series Editor, Speidel, Joachim, Series Editor, Veiga, Germano, Series Editor, Wu, Haitao, Series Editor, Zamboni, Walter, Series Editor, Tan, Kay Chen, Series Editor, Long, Shengzhao, editor, Dhillon, Balbir S., editor, and Ye, Long, editor
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- 2024
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30. Development of a Battery Swapping and Charging Unit in Servicing Station for Farming Robot: A Review
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Olt, Jüri, Ihnatiev, Yevhen, Lillerand, Tormi, Virro, Indrek, di Prisco, Marco, Series Editor, Chen, Sheng-Hong, Series Editor, Vayas, Ioannis, Series Editor, Kumar Shukla, Sanjay, Series Editor, Sharma, Anuj, Series Editor, Kumar, Nagesh, Series Editor, Wang, Chien Ming, Series Editor, Cui, Zhen-Dong, Series Editor, Lu, Xinzheng, Series Editor, Lorencowicz, Edmund, editor, Huyghebaert, Bruno, editor, and Uziak, Jacek, editor
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- 2024
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31. Fully Homomorphic Training and Inference on Binary Decision Tree and Random Forest
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Shin, Hojune, Choi, Jina, Lee, Dain, Kim, Kyoungok, Lee, Younho, Goos, Gerhard, Series Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Garcia-Alfaro, Joaquin, editor, Kozik, Rafał, editor, Choraś, Michał, editor, and Katsikas, Sokratis, editor
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- 2024
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32. Understanding Decision Trees In-Depth
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Geng, Yu, Li, Qin, Yang, Geng, Qiu, Wan, Geng, Yu, Li, Qin, Yang, Geng, and Qiu, Wan
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- 2024
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33. Customer Segmentation and Anticipation of Consumer Behaviors Based on Machine Learning and CART
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Jelonek, Dorota, Graczyk-Kucharska, Magdalena, Wyrwicka, Magdalena, Olszewski, Robert, Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, Hernes, Marcin, editor, and Wątróbski, Jarosław, editor
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- 2024
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34. Data Imputation Using Correlation-Based Machine Learning Algorithms
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Aruna Devi, B., Karthik, N., Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, Abraham, Ajith, editor, Bajaj, Anu, editor, Hanne, Thomas, editor, and Hong, Tzung-Pei, editor
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- 2024
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35. Evaluating Performance of SMOTE and ADASYN to Classify Falls and Activities of Daily Living
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Kaur, Rajbinder, Sharma, Rohini, Dhaliwal, Manpreet Kaur, Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, Pant, Millie, editor, Deep, Kusum, editor, and Nagar, Atulya, editor
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- 2024
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36. Remarks on the Dynamics of a DC Motor Moving a Cart Horizontally
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Avanço, Rafael Henrique, Zanella, Danilo Antonio, de Jesus Arias Cantillo, Raibel, Cunha, Américo, Jr, Balthazar, José Manoel, Tusset, Angelo Marcelo, and Awrejcewicz, Jan, editor
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- 2024
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37. From Wordle to Insights: Using Tailored Clustering and CART to Forecast Difficulty Levels
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Xu, Xinyi, Huang, Jinqi, Angrisani, Leopoldo, Series Editor, Arteaga, Marco, Series Editor, Chakraborty, Samarjit, Series Editor, Chen, Shanben, Series Editor, Chen, Tan Kay, Series Editor, Dillmann, Rüdiger, Series Editor, Duan, Haibin, Series Editor, Ferrari, Gianluigi, Series Editor, Ferre, Manuel, Series Editor, Hirche, Sandra, Series Editor, Jabbari, Faryar, Series Editor, Jia, Limin, Series Editor, Kacprzyk, Janusz, Series Editor, Khamis, Alaa, Series Editor, Kroeger, Torsten, Series Editor, Li, Yong, Series Editor, Liang, Qilian, Series Editor, Martín, Ferran, Series Editor, Ming, Tan Cher, Series Editor, Minker, Wolfgang, Series Editor, Misra, Pradeep, Series Editor, Mukhopadhyay, Subhas, Series Editor, Ning, Cun-Zheng, Series Editor, Nishida, Toyoaki, Series Editor, Oneto, Luca, Series Editor, Panigrahi, Bijaya Ketan, Series Editor, Pascucci, Federica, Series Editor, Qin, Yong, Series Editor, Seng, Gan Woon, Series Editor, Speidel, Joachim, Series Editor, Veiga, Germano, Series Editor, Wu, Haitao, Series Editor, Zamboni, Walter, Series Editor, Tan, Kay Chen, Series Editor, Pei, Yan, editor, Ma, Hao Shang, editor, Chan, Yu-Wei, editor, and Jeong, Hwa-Young, editor
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- 2024
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38. Wheat Seed Classification Using Gurobi Optimized Piecewise Linear Approximation-Based SVM
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Solanki, Shital, Prajapati, Ramesh, Bansal, Jagdish Chand, Series Editor, Deep, Kusum, Series Editor, Nagar, Atulya K., Series Editor, Pandit, Manjaree, editor, Gaur, M. K., editor, and Kumar, Sandeep, editor
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- 2024
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39. Enhancing Accuracy with Recursive Feature Selection Using Multiple Machine Learning and Deep Learning Techniques on NSL-KDD Dataset
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Mohanty, Subrat, Kumar, Satendra, Agarwal, Mayank, Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, Das, Swagatam, editor, Saha, Snehanshu, editor, Coello Coello, Carlos A., editor, and Bansal, Jagdish C., editor
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- 2024
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40. Classification Performance Analysis of CART and ID3 Decision Tree Classifiers on Remotely Sensed Data
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Shivakumar, B. R., Nagaraja, B. G., Thimmaraja Yadava, G., Angrisani, Leopoldo, Series Editor, Arteaga, Marco, Series Editor, Chakraborty, Samarjit, Series Editor, Chen, Jiming, Series Editor, Chen, Shanben, Series Editor, Chen, Tan Kay, Series Editor, Dillmann, Rüdiger, Series Editor, Duan, Haibin, Series Editor, Ferrari, Gianluigi, Series Editor, Ferre, Manuel, Series Editor, Jabbari, Faryar, Series Editor, Jia, Limin, Series Editor, Kacprzyk, Janusz, Series Editor, Khamis, Alaa, Series Editor, Kroeger, Torsten, Series Editor, Li, Yong, Series Editor, Liang, Qilian, Series Editor, Martín, Ferran, Series Editor, Ming, Tan Cher, Series Editor, Minker, Wolfgang, Series Editor, Misra, Pradeep, Series Editor, Mukhopadhyay, Subhas, Series Editor, Ning, Cun-Zheng, Series Editor, Nishida, Toyoaki, Series Editor, Oneto, Luca, Series Editor, Panigrahi, Bijaya Ketan, Series Editor, Pascucci, Federica, Series Editor, Qin, Yong, Series Editor, Seng, Gan Woon, Series Editor, Speidel, Joachim, Series Editor, Veiga, Germano, Series Editor, Wu, Haitao, Series Editor, Zamboni, Walter, Series Editor, Zhang, Junjie James, Series Editor, Tan, Kay Chen, Series Editor, Kalya, Shubhakar, editor, Kulkarni, Muralidhar, editor, and Bhat, Subramanya, editor
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- 2024
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41. A Comprehensive Approach Towards Enhancing Land Use Land Cover Classification Through Machine Learning and Object-Based Image Analysis
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Behera, Dhiroj Kumar, Pujar, Girish Shankar, Kumar, Rajiv, and Singh, Sudhir Kumar
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- 2024
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42. Determination of the stress concentration factor adjacent an extracted underground coal panel using the CART and MARS algorithms
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Rezaei, Mohammad, Habibi, Hazhar, and Asadizadeh, Mostafa
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- 2024
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43. Outcome in patients with HIV-associated Hodgkin lymphoma treated with chemotherapy using Doxorubicin, Bleomycin, Vinblastine, and Dacarbazine in the combination antiretroviral therapy (cART) era: results of a multicenter study from China
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Lirong Xiao, Chaoyu Wang, Sai Ma, Yifan Wang, Liping Guan, Juyi Wu, Wei Zhang, Yao Liu, and Yan Wu
- Subjects
HIV ,Hodgkin lymphoma ,cART ,Treatment ,Prognosis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Little is known about the outcome for HIV-associated Hodgkin lymphoma (HIV-HL) as this is less common than HIV-negative lymphoma. Therefore, we performed a multi-center study to analyze the clinical characteristics and outcomes of HIV-HL patients in China. Nineteen cases of HIV-HL were diagnosed and treated at three center and including the sixth people’s hospital of Zhengzhou, Peking union medical college hospital, and Chongqing university cancer hospital, between December 2013 and June 2022. Data on the clinical features, laboratory results, response, and prognosis were collected and analyzed. The median age at diagnosis was 43(22–74) years. All patients were infected with HIV through sexual transmission, with ten cases transmitted through man having sex with man (MSM) and nine cases transmitted through heterosexual transmission. Seven patients were diagnosed with lymphoma and found to be infected with HIV. Four cases were in stage III, and fifteen cases were in stage IV. After a median follow up of 46.8(4.0-112.9) months, 17 cases were alive after ABVD regimen chemotherapy combined with combination antiretroviral therapy (cART). The 5-year progression-free survival (PFS) and overall survival (OS) rate were 83.9% and 89.5%,respectively. HIV-HL exhibits an invasive process in clinical practice, and cART combined with ABVD regimen chemotherapy can achieve long-term survival for patients.
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- 2024
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44. Putting the cart before the horse: mixed-methods participatory investigation of working equid harnessing practices in three selected towns of the Oromia national regional state in Ethiopia
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Mathilde S. Merridale-Punter, Belay Elias, Abel L. Wodajo, Charles M. El-Hage, Hanna Zewdu, Reta Tesfaye, Gizachew Hailegebreal, Teshale Sori, Anke K. Wiethoelter, and Peta L. Hitchens
- Subjects
Harness ,Cart ,Horse ,Donkey ,Mixed-methods ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Millions of working equids provide socio-economic support for many low-income communities worldwide. With the prevalence of harness-related wounds reported as higher than 60%, this study aims to describe the equipment used by working equids in three locations of the Ethiopian national regional state of Oromia (Fiche, Bishoftu and Shashamene), and the attitudes and practices of equid owners, users and harness makers regarding work equipment. This mixed-methods study consists of cross-sectional surveying of working equids used for taxi or transport of goods or water, as well as cart-driver questionnaires and focus groups (FG) with working equid stakeholders. Activities conducted with FG included participatory ranking of equipment attributes and equipment drawing exercises. Indicators of equipment design and assembly, as well as cart-driver attitudes and practices were described quantitatively. Associations between equipment characteristics and species, work-type and cart-driver indicators were investigated through univariable logistic regression models, whereas focus group discussions were transcribed and analysed thematically. Results In total, 368 working equid surveys and cart-driver questionnaires were completed and 87 participants took part in nine FG. Equipment composition and characteristics differed considerably from ideal animal draught and harnessing principles described in the literature, with none of the observed harnesses adhering to all principles and thus not considered fully adequate. Various harness compositions were used, with only saddles and breast collars present in all. Donkey equipment had fewer components than that of horses, such as swingle trees (OR 0.02; 95% CI 0.01–0.06; p
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- 2024
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45. PARSEG: a computationally efficient approach for statistical validation of botanical seeds’ images
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Luca Frigau, Claudio Conversano, and Jaromír Antoch
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Statistical image validation ,Image segmentation ,Background subtraction ,Big data ,Classification ,CART ,Medicine ,Science - Abstract
Abstract Human recognition and automated image validation are the most widely used approaches to validate the output of binary segmentation methods but, as the number of pixels in an image easily exceeds several million, they become highly demanding from both practical and computational standpoint. We propose a method, called PARSEG, which stands for PArtitioning, Random Selection, Estimation, and Generalization; being the basic steps within this procedure. Suggested method enables us to perform statistical validation of binary images by selecting the minimum number of pixels from the original image to be used for validation without deteriorating the effectiveness of the validation procedure. It utilizes binary classifiers to accomplish image validation and selects the optimal sample of pixels according to a specific objective function. As a result, the computational complexity of the validation experiment is substantially reduced. The procedure’s effectiveness is illustrated by considering images composed of approximately 13 million pixels from the field of seed recognition. PARSEG provides roughly the same precision of the validation process when extended to the entire image, but it utilizes only about 4% of the original number of pixels, thus reducing, by about 90%, the computing time required to validate a binary segmented image.
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- 2024
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46. Injury severity analysis of rural vehicle crashes involving familiar and unfamiliar drivers
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Mahyar Vahedi Saheli and Patrick A. Singleton
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Injury severity ,Familiar and unfamiliar drivers ,Route familiarity ,Traffic safety ,CART ,Transportation engineering ,TA1001-1280 - Abstract
Familiar and unfamiliar drivers may exhibit different behaviours in response to the road environment. Overall familiarity with the road environment is a human factor believed to play a role in road crash injury severity due to its effect on a driver's decision-making process, reaction time, etc. Hence, there is a need to separately analyse familiar and unfamiliar drivers regarding the injury severity of crashes. Using a six-year database of 30,481 rural two-vehicle crashes in Guilan province, Iran, this research first defined four categories of crashes, reflecting various levels of the involved drivers’ familiarity with the environment (72% of drivers were from the same vs. 28% from a different province). Next, the injury severity of crashes in each familiarity crash category was analysed using both non-parametric (classification and regression trees) and parametric (logistic regression) methods. When both crash parties were unfamiliar, several results are different compared to when both parties were familiar or when ignoring driver familiarity. For instance, young at-fault drivers increased the injury severity of crashes if they were unfamiliar, while they decreased the crash severity if they were familiar. Also, crashes in winter tended to be more severe when one or especially both crash parties were unfamiliar, but winter crashes were less severe when both drivers were familiar or when driver familiarity was ignored. Overall, when both drivers were familiar, 63% of crashes were injury/fatal; however, when both drivers were unfamiliar, only 31% of crashes involved an injury or fatality.
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- 2024
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47. Trends and the associated factors of optimal immunological response and virological response in late anti-retroviral therapy initiation HIV cases in Taiwan from 2009 to 2020
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Chun-Yuan Lee, Yi-Pei Lin, Chun-Yu Lin, Tun-Chieh Chen, Shin-Huei Kuo, Shih-Hao Lo, Sheng-Fan Wang, and Po-Liang Lu
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CART ,Human immunodeficiency virus ,Immunological response ,Virological response ,Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Late cART initiation (CD4 count ≤200 cells/μL or AIDS-defining opportunistic illnesses [AOIs] at cART initiation) impedes CD4 count recovery and virologic suppression after cART initiation. However, studies to evaluate trends of and modifiable factors for optimal immunological response (IR) and virological response (VR) in people living with HIV (PLWH) with late cART initiation with the current HIV treatment strategies are limited. Methods: We retrospectively identified 475 PLWH with late cART initiation in 2009–2020. Patients were grouped based on the presence of IR (CD4 count ≥200 cells/μL) or VR (plasma viral load [PVL] ≤ 50 copies/mL) within 18 months after cART initiation (403 [84.8%] IR(+) and 72 [15.2%] IR(−); 422 [88.8%] VR(+) and 53 [11.2%] VR(−)). We used Joinpoint regression to identify IR (+) and VR(+) proportion changes. Results: From 2009 to 2020, the proportion of IR(+) patients remained unchanged (75% to 90%, P = 0.102), whereas that of VR(+) patients increased significantly (75% to 95%, P = 0.007). No join point was identified for either IR(+) or VR(+), and the annual percentage change was 0.56% (nonsignificant) and 1.35% (significant) for IR(+) and VR(+), respectively. Compared to IR(−) patients, IR(+) patients were more likely to have a higher pre-cART PVL, to start with a first-line INSTI-based regimen, or to start cART within 14 days of HIV diagnosis but were less likely to have chronic kidney disease, composite AOIs, or a lower pre-cART CD4 count. Compared to VR(−) patients, VR(+) patients were more likely to start a single-tablet regimen but were less likely to have a higher pre-cART PVL. Conclusions: Our study identified several modifiable factors for optimal IR (rapid cART initiation and INSTI-based regimen initiation) and for optimal VR (STR initiation) among late initiators, which may guide early treatment modifications to reduce their AIDS-defining event incidence and mortality.
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- 2024
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48. Long-term antiretroviral therapy mitigates mortality and morbidity independent of HIV tropism: 18 years follow-up in a women's cohort
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Weiser, Barbara, Shi, Binshan, Kemal, Kimdar, Burger, Harold, Minkoff, Howard, Shi, Qiuhu, Gao, Wei, Robison, Esther, Holman, Susan, Schroeder, Tamara, Gormley, Alissa, Anastos, Kathryn, and Ramirez, Christina
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Medical Microbiology ,Biomedical and Clinical Sciences ,Health Sciences ,HIV/AIDS ,Infectious Diseases ,Pediatric ,Infection ,Good Health and Well Being ,Female ,Humans ,Male ,HIV Infections ,Acquired Immunodeficiency Syndrome ,Follow-Up Studies ,HIV-1 ,Viral Tropism ,Tropism ,Morbidity ,cART ,CCR5 ,combination antiretroviral therapy ,CXCR4 ,HAART ,HIV infection in women ,HIV-1 coreceptor usage ,HIV-1 tropism ,immunologic nonresponders ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Virology ,Biomedical and clinical sciences ,Health sciences - Abstract
ObjectiveCXCR4 (X4)-tropic HIV-1 was found previously to herald CD4 + cell depletion and disease progression in individuals who were antiretroviral-naive or took combination antiretroviral therapy (cART) for less than 5 years. We updated this finding by investigating whether the deleterious effect of X4-tropic strains is mitigated by long-term cART.DesignWe examined morbidity and mortality in relation to HIV-1 tropism and cART in 529 participants followed up to 18 years in the Women's Interagency HIV Study; 91% were women of color.MethodsPlasma-derived HIV-1 tropism was determined genotypically.ResultsWe categorized participants according to the number of visits reported on cART after initiation. Group 1: three or less visits, 74% of these participants reporting no cART; group 2: at least four visits and less than 70% of visits on cART; group 3: at least 70% of visits on cART. AIDS mortality rates for participants in each group with X4 virus compared with those with R5 virus exclusively were, respectively: 62 vs. 40% ( P = 0.0088); 23% vs. 22% [nonsignificant (NS)]; 7% vs. 14% (NS). Kaplan-Meier curves showed accelerated progression to AIDS death or AIDS-defining illness in participants with three or less cART visits and X4 viruses ( P = 0.0028) but no difference in progression rates stratified by tropism in other groups. Logistic regression found that HIV-1 suppression for at least 10 semiannual visits (≥5 years total) mitigated X4 tropism's deleterious effect on mortality, controlling for maximal viral load, and CD4 + nadir.ConclusionLong-term cART markedly mitigated the deleterious effect of X4 viruses on AIDS morbidity and mortality. Mitigation was correlated with duration of viral suppression, supporting HIV-1 suppression as a crucial goal.
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- 2022
49. Regression trees and ensembles for cumulative incidence functions
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Cho, Youngjoo, Molinaro, Annette M, Hu, Chen, and Strawderman, Robert L
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Infectious Diseases ,Mental Health ,Patient Safety ,Incidence ,Machine Learning ,Brier score ,CART ,cause-specific hazard ,competing risks ,Fine and Gray model ,random forests ,Statistics ,Statistics & Probability - Abstract
The use of cumulative incidence functions for characterizing the risk of one type of event in the presence of others has become increasingly popular over the past two decades. The problems of modeling, estimation and inference have been treated using parametric, nonparametric and semi-parametric methods. Efforts to develop suitable extensions of machine learning methods, such as regression trees and ensemble methods, have begun comparatively recently. In this paper, we propose a novel approach to estimating cumulative incidence curves in a competing risks setting using regression trees and associated ensemble estimators. The proposed methods use augmented estimators of the Brier score risk as the primary basis for building and pruning trees, and lead to methods that are easily implemented using existing R packages. Data from the Radiation Therapy Oncology Group (trial 9410) is used to illustrate these new methods.
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- 2022
50. Outcome in patients with HIV-associated Hodgkin lymphoma treated with chemotherapy using Doxorubicin, Bleomycin, Vinblastine, and Dacarbazine in the combination antiretroviral therapy (cART) era: results of a multicenter study from China.
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Xiao, Lirong, Wang, Chaoyu, Ma, Sai, Wang, Yifan, Guan, Liping, Wu, Juyi, Zhang, Wei, Liu, Yao, and Wu, Yan
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THERAPEUTIC use of antineoplastic agents , *HIV infection complications , *HIV infection transmission , *VINBLASTINE , *ACADEMIC medical centers , *RESEARCH funding , *SYMPTOMS , *TREATMENT effectiveness , *RETROSPECTIVE studies , *DESCRIPTIVE statistics , *CANCER chemotherapy , *BLEOMYCIN , *HIGHLY active antiretroviral therapy , *MEN who have sex with men , *DOXORUBICIN , *DACARBAZINE , *RESEARCH , *TUMOR classification , *PROGRESSION-free survival , *HODGKIN'S disease , *PATIENT aftercare , *OVERALL survival - Abstract
Little is known about the outcome for HIV-associated Hodgkin lymphoma (HIV-HL) as this is less common than HIV-negative lymphoma. Therefore, we performed a multi-center study to analyze the clinical characteristics and outcomes of HIV-HL patients in China. Nineteen cases of HIV-HL were diagnosed and treated at three center and including the sixth people's hospital of Zhengzhou, Peking union medical college hospital, and Chongqing university cancer hospital, between December 2013 and June 2022. Data on the clinical features, laboratory results, response, and prognosis were collected and analyzed. The median age at diagnosis was 43(22–74) years. All patients were infected with HIV through sexual transmission, with ten cases transmitted through man having sex with man (MSM) and nine cases transmitted through heterosexual transmission. Seven patients were diagnosed with lymphoma and found to be infected with HIV. Four cases were in stage III, and fifteen cases were in stage IV. After a median follow up of 46.8(4.0-112.9) months, 17 cases were alive after ABVD regimen chemotherapy combined with combination antiretroviral therapy (cART). The 5-year progression-free survival (PFS) and overall survival (OS) rate were 83.9% and 89.5%,respectively. HIV-HL exhibits an invasive process in clinical practice, and cART combined with ABVD regimen chemotherapy can achieve long-term survival for patients. [ABSTRACT FROM AUTHOR]
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- 2024
- Full Text
- View/download PDF
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