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Casparian strip membrane domain proteins like (CASPL), exhibit profound associations with root development, stress responsiveness and mineral element uptake in plants. Nonetheless, a comprehensive bioinformatics analysis of the ZmCASPL gene family in maize remains unreported. In the study, we have identified 47 ZmCASPL members at the whole-genome level, systematically classifying them into six distinct groups. Furthermore, our analysis revealed that the same group of ZmCASPL contains similar gene structures and conserved motifs. Duplication events showed whole genome duplication (WGD) and tandem duplication (TD) contribute to the generation of the ZmCASPL gene family together in maize, but the former plays a more prominent role. Furthermore, we observed that most ZmCASPL genes contain MYB-binding sites (CAACCA), which are associated with the Casparian strip. Utilizing RNA-seq data, we found that ZmCASPL21 and ZmCASPL47 are specifically highly expressed only in the roots. This finding implies that ZmCASPL21 and ZmCASPL47 may be involved in the Casparian strip development. Additionally, RNA-seq analysis illuminated that drought, salt, heat, cold stresses, low nitrogen and phosphorus conditions, as well as pathogen infection, significantly impact the expression patterns of ZmCASPL genes. RT-qPCR revealed that ZmCASPL 5/13/25/44 genes showed different expression patterns under PEG and NaCl treatments. Collectively, these findings provide a robust theoretical foundation for further investigations into the functional roles of the ZmCASPL gene family in maize. [ABSTRACT FROM AUTHOR]

Background: Climate change threatens sub-Saharan Africa's agricultural production, causing abiotic and biotic stressors. The study of plant responses to joint stressors is crucial for understanding molecular processes and identifying resilient crops for global food security. This study aimed to explore the shared and tailored responses of okra plants (cv. ''Meya'), at the biochemical and molecular levels, subjected to combined stresses of drought and Meloidogyne incognita infection. Design: The study involved 240 okra plants in a completely randomized design, with six treatments replicated 20 times. Okra plants were adequately irrigated at the end of every 10-days water deficit that lasted for 66 days (D). Also, the plants were infected with M. incognita for 66 days and irrigated at 2-days intervals (R). The stresses were done independently, in sequential combination (D before R and R before D) and concurrently (R and D). All biochemical and antioxidant enzyme assays were carried out following standard procedures. Results: Significant reductions in leaf relative water content were recorded in all stressed plants, especially in leaves of plants under individual drought stress (D) (41.6%) and plants stressed with root-knot nematode infection before drought stress (RBD) (41.4%). Malondialdehyde contents in leaf tissues from plants in D, nematode-only stress (RKN), drought stress before root-knot nematode infection (DBR), RBD, and concurrent drought-nematode stress (RAD) significantly increased by 320.2%, 152.9%, 186.5%, 283.7%, and 109.6%, respectively. Plants in D exhibited the highest superoxide dismutase activities in leaf (147.1% increase) and root (105.8% increase) tissues. Catalase (CAT) activities were significantly increased only in leaves of plants in D (90.8%) and RBD (88.9%), while only roots of plants in D exhibited a substantially higher CAT activity (139.3% increase) in comparison to controlled plants. Okra plants over-expressed NCED3 and under-expressed Me3 genes in leaf tissues. The NCED3 gene was overexpressed in roots from all treatments, while CYP707A3 was under-expressed only in roots of plants in RBD and RKN. CYP707A3 and NCED3 were grouped as closely related genes, while members of the Me3 genes were clustered into a separate group. Conclusion: The biochemical and molecular responses observed in okra plants (cv. ''Meya') subjected to combined stresses of drought and Meloidogyne incognita infection provide valuable insights into enhancing crop resilience under multifaceted stress conditions, particularly relevant for agricultural practices in sub-Saharan Africa facing increasing climatic challenges. [ABSTRACT FROM AUTHOR]

Receptor-like cytoplasmic kinases (RLCKs) have become major players in plant immunity regardless of the pathways involved. RLCKs form regulatory nodes that link receptors to downstream regulators that modulate plant hormones, Ca2+ signaling, reactive oxygen species (ROS) accumulation as well as activation of mitogen-activated protein kinases (MAPKs), transcription regulators, and immune gene expression. Phosphorylation, ubiquitination, and other post-translational modifications by effectors regulate RLCKs, enabling functional versatility and homeostasis. As major integrators of signals from receptors, RLCKs are potential targets for biotechnological applications. RLCKs play pivotal roles in plant immunity by contributing to both PTI and ETI. Due to their critical functions, these kinases are targets for manipulation by pathogen effectors to attenuate PTI. RLCKs also directly or indirectly recognize effectors and activate ETI. The function of RLCKs in crop plant immunity is emerging. The receptor-like kinase (RLK) family of receptors and the associated receptor-like cytoplasmic kinases (RLCKs) have expanded in plants because of selective pressure from environmental stress and evolving pathogens. RLCKs link pathogen perception to activation of coping mechanisms. RLK–RLCK modules regulate hormone synthesis and responses, reactive oxygen species (ROS) production, Ca2+ signaling, activation of mitogen-activated protein kinase (MAPK), and immune gene expression, all of which contribute to immunity. Some RLCKs integrate responses from multiple receptors recognizing distinct ligands. RLKs/RLCKs and nucleotide-binding domain, leucine-rich repeats (NLRs) were found to synergize, demonstrating the intertwined genetic network in plant immunity. Studies in arabidopsis (Arabidopsis thaliana) have provided paradigms about RLCK functions, but a lack of understanding of crop RLCKs undermines their application. In this review, we summarize current understanding of the diverse functions of RLCKs, based on model systems and observations in crop species, and the emerging role of RLCKs in pathogen and abiotic stress response signaling. [ABSTRACT FROM AUTHOR]

Lablab bean (Lablab purpureus L.) is a multipurpose leguminous crop renowned for its nutritional value and tolerance to a range of climates. Lablab bean, originated from India, has key nutritional components such as proteins, minerals, vitamins, and essential fatty acids, making it an important dietary staple in tropical and subtropical countries. However, its production is hampered by a variety of biotic and abiotic obstacles, including bacterial, fungal, and viral infections, nematode infestations, and harsh climatic circumstances such as drought, salt, heat stress, and poor soil fertility. Breeding efforts are critical to overcoming these problems and realizing Lablab's full potential. Genomic selection, speed breeding, mutation breeding, genome editing, pre-breeding, molecular breeding, and omics technologies are paving the way for better varieties with higher nutritional values. Furthermore, using wild relatives and landraces increases genetic diversity and robustness in breeding operations. Overall, this review emphasizes the relevance of the Lablab bean crop, which has enormous potential for addressing global food security issues. Researchers can uncover the nutritional and agronomic benefits of Lablab bean by leveraging contemporary breeding methodologies and genetic resources, assuring its long-term cultivation and contribution to global human nutrition. [ABSTRACT FROM AUTHOR]

Abstract Background Climate change threatens sub-Saharan Africa’s agricultural production, causing abiotic and biotic stressors. The study of plant responses to joint stressors is crucial for understanding molecular processes and identifying resilient crops for global food security. This study aimed to explore the shared and tailored responses of okra plants (cv. ‘’Meya’), at the biochemical and molecular levels, subjected to combined stresses of drought and Meloidogyne incognita infection. Design The study involved 240 okra plants in a completely randomized design, with six treatments replicated 20 times. Okra plants were adequately irrigated at the end of every 10-days water deficit that lasted for 66 days (D). Also, the plants were infected with M. incognita for 66 days and irrigated at 2-days intervals (R). The stresses were done independently, in sequential combination (D before R and R before D) and concurrently (R and D). All biochemical and antioxidant enzyme assays were carried out following standard procedures. Results Significant reductions in leaf relative water content were recorded in all stressed plants, especially in leaves of plants under individual drought stress (D) (41.6%) and plants stressed with root-knot nematode infection before drought stress (RBD) (41.4%). Malondialdehyde contents in leaf tissues from plants in D, nematode-only stress (RKN), drought stress before root-knot nematode infection (DBR), RBD, and concurrent drought-nematode stress (RAD) significantly increased by 320.2%, 152.9%, 186.5%, 283.7%, and 109.6%, respectively. Plants in D exhibited the highest superoxide dismutase activities in leaf (147.1% increase) and root (105.8% increase) tissues. Catalase (CAT) activities were significantly increased only in leaves of plants in D (90.8%) and RBD (88.9%), while only roots of plants in D exhibited a substantially higher CAT activity (139.3% increase) in comparison to controlled plants. Okra plants over-expressed NCED3 and under-expressed Me3 genes in leaf tissues. The NCED3 gene was overexpressed in roots from all treatments, while CYP707A3 was under-expressed only in roots of plants in RBD and RKN. CYP707A3 and NCED3 were grouped as closely related genes, while members of the Me3 genes were clustered into a separate group. Conclusion The biochemical and molecular responses observed in okra plants (cv. ‘’Meya’) subjected to combined stresses of drought and Meloidogyne incognita infection provide valuable insights into enhancing crop resilience under multifaceted stress conditions, particularly relevant for agricultural practices in sub-Saharan Africa facing increasing climatic challenges.

Plants produce a diverse range of specialized metabolites that play pivotal roles in mediating environmental interactions and stress adaptation. These unique chemical compounds also hold significant agricultural, medicinal, and industrial values. Despite the expanding knowledge of their functions in plant stress interactions, understanding the intricate biosynthetic pathways of these natural products remains challenging due to gene and pathway redundancy, multifunctionality of proteins, and the activity of enzymes with broad substrate specificity. In the past decade, substantial progress in genomics, transcriptomics, metabolomics, and proteomics has made the exploration of plant specialized metabolism more feasible than ever before. Notably, recent advances in integrative multi-omics and computational approaches, along with other technologies, are accelerating the discovery of plant specialized metabolism. In this review, we present a summary of the recent progress in the discovery of plant stress-related specialized metabolites. Emphasis is placed on the application of advanced omics-based approaches and other techniques in studying plant stress-related specialized metabolism. Additionally, we discuss the high-throughput methods for gene functional characterization. These advances hold great promise for harnessing the potential of specialized metabolites to enhance plant stress resilience in the future.

Abstract Potato is the most widely grown non-grain crop and ranks as the third most significant global food crop following rice and wheat. Despite its long history of cultivation over vast areas, slow breeding progress and environmental stress have led to a scarcity of high-yielding potato varieties. Enhancing the quality and yield of potato tubers remains the ultimate objective of potato breeding. However, conventional breeding has faced challenges due to tetrasomic inheritance, high genomic heterozygosity, and inbreeding depression. Recent advancements in molecular biology and functional genomic studies of potato have provided valuable insights into the regulatory network of physiological processes and facilitated trait improvement. In this review, we present a summary of identified factors and genes governing potato growth and development, along with progress in potato genomics and the adoption of new breeding technologies for improvement. Additionally, we explore the opportunities and challenges in potato improvement, offering insights into future avenues for potato research.

Sexual reproduction, growth, and survival are crucial demographic strategies for plant population viability. Here, we propose a conceptual model predicting demographic responses of species based on their ecological strategy and the heterogeneity of environmental conditions within a biogeographical unit and then applied it to a case study from a 5˚ latitudinal gradient in the Patagonian steppes. We also aim to disentangle genetic from environmental effects on demographic responses. We performed in situ and common garden experiments with two species from six local populations of the Occidental Phytogeographical District of the Patagonian steppes. Species differ in key ecological traits, and thus fit into Grime's model for evolutionary strategies in plants: one as competitive species and the other as stress‐tolerant species. We calculated population growth rate (λ) and performed elasticity analyses to compare the contribution of each demographic strategy to population fitness between species and among local populations distributed along 600 km latitudinal gradient with differences in mean annual precipitation (MAP). We highlight four results. First, the competitive species change from sexual reproduction to growth as MAP increases. Second, the stress‐tolerant species relied on growth and survival along the MAP gradient. Third, interannual variation in resource availability modulated demographic responses for both strategies. Fourth, based on the comparison of the in situ and common garden experiments, we submit that demographic responses were genetically driven. Our study shows that demographic responses can be roughly predicted by the ecological strategy across environmental gradients. We show that differences arise not only between species, but also were genetically driven differences within species among local populations. Scaling up plant‐level responses to population‐level dynamics allows for a process‐based understanding of current and future biogeographical species organization. Furthermore, conservation and restoration efforts should be guided by demographic strategies underlying population viability. [ABSTRACT FROM AUTHOR]

Potato is the most widely grown non-grain crop and ranks as the third most significant global food crop following rice and wheat. Despite its long history of cultivation over vast areas, slow breeding progress and environmental stress have led to a scarcity of high-yielding potato varieties. Enhancing the quality and yield of potato tubers remains the ultimate objective of potato breeding. However, conventional breeding has faced challenges due to tetrasomic inheritance, high genomic heterozygosity, and inbreeding depression. Recent advancements in molecular biology and functional genomic studies of potato have provided valuable insights into the regulatory network of physiological processes and facilitated trait improvement. In this review, we present a summary of identified factors and genes governing potato growth and development, along with progress in potato genomics and the adoption of new breeding technologies for improvement. Additionally, we explore the opportunities and challenges in potato improvement, offering insights into future avenues for potato research. [ABSTRACT FROM AUTHOR]

The homologous E6-AP carboxy-terminal structural domain (HECT) contained in E3 ubiquitin ligases (E3s) is a key factor in protein degradation and maintenance of cellular homeostasis in animals. However, the functional roles and evolutionary aspects of the HECT gene family in bivalve mussels remain unclear and warrant further investigation. In this study, we identified 22 HECT genes within the genome of Mytilus coruscus Gould, all containing a conserved HECT structural domain derived from dispersed repeats, distributed unevenly across 11 chromosomes. Phylogenetic analysis classified M. coruscus HECT genes into six major classes, with amino acid sequences within the same evolutionary clade displaying similar conserved motifs. Homology analysis with HECT genes of four bivalve species revealed that M. coruscus and Mytilus galloprovincialis possessed the largest number of homologous gene pairs, showing a significant correlation between the two in the evolution of the HECT gene family. Homology analysis with HECT genes of four bivalve species revealed that M. coruscus and M. galloprovincialis possessed the largest number of homologous gene pairs, showing a significant correlation between the two in the evolution of the HECT gene family. M. coruscus exhibited pronounced and specific expression in gills and blood tissues. Notably, Mco_UPL3 gene expression was significantly upregulated after 12 h of acute heat stress (33 °C) and 24 h of Vibrio injection (0.4 OD). Gene ontology analysis of the HECT genes in M. coruscus revealed that it is primarily enriched in protein modification and degradation functions. This suggests that HECT genes may play a key role in protein degradation and immunomodulation in M. coruscus. These findings offer valuable insights for the breeding of stress-tolerant traits in M. coruscus. In summary, our data shed light on the potential functions of HECT E3 ligases in response to heat stress and Vibrio infection, providing practical guidance for enhancing resilience through breeding in M. coruscus. [ABSTRACT FROM AUTHOR]

Sugarcane, a vital cash crop, contributes significantly to the world's sugar supply and raw materials for biofuel production, playing a significant role in the global sugar industry. However, sustainable productivity is severely hampered by biotic and abiotic stressors. Genetic engineering has been used to transfer useful genes into sugarcane plants to improve desirable traits and has emerged as a basic and applied research method to maintain growth and productivity under different adverse environmental conditions. However, the use of transgenic approaches remains contentious and requires rigorous experimental methods to address biosafety challenges. Clustered regularly interspaced short palindromic repeat (CRISPR) mediated genome editing technology is growing rapidly and may revolutionize sugarcane production. This review aims to explore innovative genetic engineering techniques and their successful application in developing sugarcane cultivars with enhanced resistance to biotic and abiotic stresses to produce superior sugarcane cultivars. [ABSTRACT FROM AUTHOR]

Casparian strip membrane domain proteins like (CASPL), exhibit profound associations with root development, stress responsiveness and mineral element uptake in plants. Nonetheless, a comprehensive bioinformatics analysis of the ZmCASPL gene family in maize remains unreported. In the study, we have identified 47 ZmCASPL members at the whole-genome level, systematically classifying them into six distinct groups. Furthermore, our analysis revealed that the same group of ZmCASPL contains similar gene structures and conserved motifs. Duplication events showed whole genome duplication (WGD) and tandem duplication (TD) contribute to the generation of the ZmCASPL gene family together in maize, but the former plays a more prominent role. Furthermore, we observed that most ZmCASPL genes contain MYB-binding sites (CAACCA), which are associated with the Casparian strip. Utilizing RNA-seq data, we found that ZmCASPL21 and ZmCASPL47 are specifically highly expressed only in the roots. This finding implies that ZmCASPL21 and ZmCASPL47 may be involved in the Casparian strip development. Additionally, RNA-seq analysis illuminated that drought, salt, heat, cold stresses, low nitrogen and phosphorus conditions, as well as pathogen infection, significantly impact the expression patterns of ZmCASPL genes. RT-qPCR revealed that ZmCASPL 5/13/25/44 genes showed different expression patterns under PEG and NaCl treatments. Collectively, these findings provide a robust theoretical foundation for further investigations into the functional roles of the ZmCASPL gene family in maize.

• Ca2+ signals orchestrate spatial-temporal patterns regulating plant growth and stress. • Ca2+ sensors like CaM/CBL decode signatures to actuate divergent programs. • Compartmentalized Ca2+ signaling integrates intra/extracellular cues for stress. • Ca2+ signature dynamics encoded by channels/pumps activate stress genes. • Engineering Ca2+ sensor-effector modules enhances abiotic stress resilience. Calcium ions (Ca2+) serve as ubiquitous signaling molecules and are involved in diverse biological processes, particularly pivotal in plant growth and stress response. When plants sense environmental changes, an initial response involves an intracellular shift in free Ca2+ levels, with the spatiotemporal characteristics influenced by the nature, intensity, and duration of the stimulus. Decoding and relaying these changes into biological processes require the utilization of Ca2+ sensors. Abiotic stresses impact plant physiology and development by causing environmental fluctuations beyond optimal ranges. Abiotic stressors encompass suboptimal temperature, osmotic disturbances, hazardous ions, and nutrient deficiency. Recognizing and transducing signals in response to these stressors involve multiple components and methods due to their complexity. Additionally, plants contend with biotic factors, triggering calcium signaling cascades. However, understanding of gene functions related to managing specific transient calcium signals during particular stresses is limited. This review delves into the emerging conceptual implications of Ca2+ signaling in plant abiotic stress responses at both intracellular and extracellular levels. It also explores the potential influence of Ca2+ signaling on various agricultural stresses in future research directions. [ABSTRACT FROM AUTHOR]

Silicon (Si) is a widely recognized beneficial element in plants. With the emergence of nanotechnology in agriculture, silicon nanoparticles (SiNPs) demonstrate promising applicability in sustainable agriculture. Particularly, the application of SiNPs has proven to be a high-efficiency and cost-effective strategy for protecting plant against various biotic and abiotic stresses such as insect pests, pathogen diseases, metal stress, drought stress, and salt stress. To date, rapid progress has been made in unveiling the multiple functions and related mechanisms of SiNPs in promoting the sustainability of agricultural production in the recent decade, while a comprehensive summary is still lacking. Here, the review provides an up-to-date overview of the synthesis, uptake and translocation, and application of SiNPs in alleviating stresses aiming for the reasonable usage of SiNPs in nano-enabled agriculture. The major points are listed as following: (1) SiNPs can be synthesized by using physical, chemical, and biological (green synthesis) approaches, while green synthesis using agricultural wastes as raw materials is more suitable for large-scale production and recycling agriculture. (2) The uptake and translocation of SiNPs in plants differs significantly from that of Si, which is determined by plant factors and the properties of SiNPs. (3) Under stressful conditions, SiNPs can regulate plant stress acclimation at morphological, physiological, and molecular levels as growth stimulator; as well as deliver pesticides and plant growth regulating chemicals as nanocarrier, thereby enhancing plant growth and yield. (4) Several key issues deserve further investigation including effective approaches of SiNPs synthesis and modification, molecular basis of SiNPs-induced plant stress resistance, and systematic effects of SiNPs on agricultural ecosystem. [ABSTRACT FROM AUTHOR]

Plants live in environments where they are constantly, and often simultaneously, exposed to different types of biotic and abiotic stress, such as insect herbivory and water availability. How plants are adapted to abiotic conditions may determine how a surplus or shortage of water affects plant resistance to insect herbivory. Moreover, this effect may vary depending on the feeding mode of the herbivore.We explored how three closely related Rorippa plant species that vary in adaptations to different water levels, resist herbivory by four different insects (aphids: Myzus persicae, Lipaphis erysimi, and caterpillars: Pieris brassicae, Plutella xylostella) under waterlogging or drought conditions. We hypothesized that plants that are differently adapted to water availability will be disparately affected by water availability in their resistance to insect herbivory.On the semi‐aquatic plant species Rorippa amphibia, both aphid species reached a larger colony size under drought conditions. This indicates that R. amphibia was compromised in resistance to aphid feeding when under drought conditions, to which it is less well adapted. Water conditions did not affect aphid performance on the flood‐plain species Rorippa palustris. On the terrestrial plant species Rorippa sylvestris, aphids performed worse on waterlogged than drought‐treated plants. Neither caterpillar species was significantly affected by the water availability of their food plant.Our findings suggest that water availability can have distinct effects on plant–insect interactions. We propose that plant adaptations to water conditions can be a major predictor towards explaining the variation of effects that water availability can have on plant–insect interactions. [ABSTRACT FROM AUTHOR]

Cowpea (Vigna unguiculata) is a self-pollinating grain legume, fodder, and vegetable crop grown in a variety of tropical and subtropical climates around the world. Due to its nutritive value and soil-improving properties, it is also used as a fodder, green manure and cover crop. Being a legume crop, cowpea fits well in the inter-cropping system. Many biotic stresses, such as diseases caused by fungi, bacteria and viruses, significantly affect the crop yield in cowpeas. Apart from these, abiotic stresses such as drought, salinity stress and cold stresses are emerging problems. Therefore, it is required to breed many resistant varieties or genotypes through the identification of resistant gene pools. Vegetable cowpea breeding programs aim to develop cowpea varieties for vegetable purposes with tender pods in a bush or semi-determinate growth habits. Besides the development of high-yielding varieties, resistance to diseases such as golden mosaic disease, Cercospora leaf spot and anthracnose, resistance to insect pests such as bruchids pod borer and tolerance to abiotic stresses such as drought, salinity and high-temperature stresses is important. To achieve this traditional breeding combined with molecular approaches such as marker-assisted selection and genomic selection increases the precision of selection for desirable traits and also aids in the development of varieties with combined resistance to two or more diseases in less time. Genomic prediction and genomic selection schemes in cowpeas showed considerable improvement in predication accuracies and integrating with breeding schemes helps to enhance genetic gain. [ABSTRACT FROM AUTHOR]

Growth and agricultural production of crops including, Abelmoschus esculentus (okra), a staple and nutritious vegetable cultivated and consumed in sub-Saharan Africa, is threatened and constrained by abiotic and biotic stresses caused by global climate change. While individual stressors cause devastating impacts to agricultural production, the possible combination of different multiple stresses (either jointly or sequentially), could pose a greater threat to global food production and food security. This study aimed at exploring morphological responses of okra plants cv. 'Meya' subjected to individual, sequential and concurrent stresses of drought and Meloidogyne incognita a causative agent of root-knot disease. Results showed both stresses significantly reduced growth and yield components of plants. Individual drought stressed plants significantly reduced growth compared to plants stressed with only nematode infection. Varied morphological differences were observed between plants stressed in sequence and those that received both stresses concomitantly. Plants subjected to dehydration stress prior to nematode infection coped better with the stress combination in comparison to plants that were challenged with nematode infection before dehydration stress and concurrent drought-nematode stress. This okra cultivar was either highly or moderately resistant to nematode infection by moderate formation and establishment of galls and egg masses. Survival mechanisms of this cultivar under both stresses could be primarily linked to its water-use efficiency as well as several cascades of changes in signal transduction pathways. [ABSTRACT FROM AUTHOR]

The emergence of new plant diseases is an increasingly important concern. Climate change is likely to be among the factors causing most of the emerging diseases endangering forest and tree heritage around the world. Such diseases may be caused by latent pathogens or microorganisms cryptically associated with plants. The shift from a non-pathogenic to a pathogenic stage may depend on physiological alterations of the host, environmental changes, and/or stress factors. In some woods of the Salento Peninsula (Apulia Region, Italy), sudden declines of holm oak plants (Quercus ilex L.) have been observed since 2016. The morphological and molecular characterization of representative fungal isolates associated with cankers and necrosis in declining plants indicated that these isolates belong to the Botryosphaeriaceae family, and the most frequent species were Diplodia corticola and Diplodia quercivora, followed by Neofusicoccum vitifusiforme. In artificially inoculated young holm oak plants, both D. corticola and D. quercivora species produced intense and severe subcortical and leaf margin necrosis. N. vitifusiforme, although less aggressive, induced the same symptoms. Our research, in addition to confirming the involvement of D. corticola in olm oak decline, represents the first report of D. quercivora as a new pathogen of Q. ilex in Italy. Furthermore, to the best of our knowledge, we also found N. vitifusiforme as a new pathogen of Q. ilex. [ABSTRACT FROM AUTHOR]

Key message: This review summarized how TFs function independently or in response to environmental factors to regulate terpenoid biosynthesis via fine-tuning the expression of rate-limiting enzymes. Terpenoids are derived from various species and sources. They are essential for interacting with the environment and defense mechanisms, such as antimicrobial, antifungal, antiviral, and antiparasitic properties. Almost all terpenoids have high medicinal value and economic performance. Recently, the control of enzyme genes on terpenoid biosynthesis has received a great deal of attention, but transcriptional factors regulatory network on terpenoid biosynthesis and accumulation has yet to get a thorough review. Transcription factors function as activators or suppressors independently or in response to environmental stimuli, fine-tuning terpenoid accumulation through regulating rate-limiting enzyme expression. This study investigates the advancements in transcription factors related to terpenoid biosynthesis and systematically summarizes previous works on the specific mechanisms of transcription factors that regulate terpenoid biosynthesis via hormone signal–transcription regulatory networks in plants. This will help us to better comprehend the regulatory network of terpenoid biosynthesis and build the groundwork for terpenoid development and effective utilization. [ABSTRACT FROM AUTHOR]

Traditional agriculture relies heavily on chemical inputs, which pose significant threats to the environment and deplete natural resources. The environmental challenges posed by chemical-based agriculture and emphasizes the urgent need for sustainable alternatives in the face of climate change. Acknowledging the detrimental impact of environmental stressors on global agriculture sets the stage for exploration of PGPR as a promising solution. Plant Growth-Promoting Rhizobacteria (PGPR) have emerged as a sustainable alternative, fostering plant development, and enhancing stress resilience. A comprehensive understanding of the underlying signalling pathways and stress management mechanisms is essential to maximizing their potential. Plant health has been demonstrated, nutrient uptake has improved, and environmental stress has been reduced with the help of PGPR. Identifying the specific plant signalling pathways that are impacted by PGPR and comprehending their function in stress mitigation are critical to creating efficient and sustainable farming practises. Utilizing PGPR-mediated stress control may reduce the need for chemical inputs, encouraging environmentally friendly farming methods. By creating genetically engineered crops with increased stress tolerance, the knowledge gathered in this review can help ensure food security in the face of climate change. The signalling pathways involved, the processes underpinning PGPR-plant interactions, and the responses of plants to diverse stressors when PGPR is present have been explored. This review offers helpful insights into the intricate link between PGPR and plants, putting light on the uncertainties that beg for additional research by critically analysing the present literature and highlighting knowledge gaps.

Abstract Background GDSL esterase/lipases (GELPs) play important roles in plant growth, development, and response to biotic and abiotic stresses. Presently, an extensive and in-depth analysis of GELP family genes in cotton is still not clear enough, which greatly limits the further understanding of cotton GELP function and regulatory mechanism. Results A total of 389 GELP family genes were identified in three cotton species of Gossypium hirsutum (193), G. arboreum (97), and G. raimondii (99). These GELPs could be classified into three groups and eight subgroups, with the GELPs in same group to have similar gene structures and conserved motifs. Evolutionary event analysis showed that the GELP family genes tend to be diversified at the spatial dimension and certain conservative at the time dimension, with a trend of potential continuous expansion in the future. The orthologous or paralogous GELPs among different genomes/subgenomes indicated the inheritance from genome-wide duplication during polyploidization, and the paralogous GELPs were derived from chromosomal segment duplication or tandem replication. GELP genes in the A/D subgenome underwent at least three large-scale replication events in the evolutionary process during the period of 0.6—3.2 MYA, with two large-scale evolutionary events between 0.6—1.8 MYA that were associated with tetraploidization, and the large-scale duplication between 2.6—9.1 MYA that occurred during diploidization. The cotton GELPs indicated diverse expression patterns in tissue development, ovule and fiber growth, and in response to biotic and abiotic stresses, combining the existing cis-elements in the promoter regions, suggesting the GELPs involvements of functions to be diversification and of the mechanisms to be a hormone-mediated manner. Conclusions Our results provide a systematic and comprehensive understanding the function and regulatory mechanism of cotton GELP family, and offer an effective reference for in-depth genetic improvement utilization of cotton GELPs.

Sugar metabolism not only determines fruit sweetness and quality but also acts as signaling molecules to substantially connect with other primary metabolic processes and, therefore, modulates plant growth and development, fruit ripening, and stress response. The basic region/leucine zipper motif (bZIP) transcription factor family is ubiquitous in eukaryotes and plays a diverse array of biological functions in plants. Among the bZIP family members, the smallest bZIP subgroup, S1-bZIP, is a unique one, due to the conserved upstream open reading frames (uORFs) in the 5' leader region of their mRNA. The translated small peptides from these uORFs are suggested to mediate Sucrose-Induced Repression of Translation (SIRT), an important mechanism to maintain sucrose homeostasis in plants. Here, we review recent research on the evolution, sequence features, and biological functions of this bZIP subgroup. S1-bZIPs play important roles in fruit quality, abiotic and biotic stress responses, plant growth and development, and other metabolite biosynthesis by acting as signaling hubs through dimerization with the subgroup C-bZIPs and other cofactors like SnRK1 to coordinate the expression of downstream genes. Direction for further research and genetic engineering of S1-bZIPs in plants is suggested for the improvement of quality and safety traits of fruit.

This document is an editorial published in the journal Frontiers in Plant Science. It discusses the use of bio-based compounds from plants and beneficial microbes to alleviate biotic and abiotic stress in agriculture. The editorial highlights the importance of sustainable and greener solutions in crop protection and resilience. It also mentions various studies that explore the mechanisms and applications of bio-based compounds, including their role in salt stress tolerance, Cd stabilization, defense against pests and pathogens, and as biostimulants. The editorial concludes by emphasizing the need for further research to understand the molecular and physiological mechanisms involved in the use of bio-based compounds and their impact on rhizospheric microbial communities. [Extracted from the article]

Abstract The sessile nature of plants confines their responsiveness to changing environmental conditions. Gene expression regulation becomes a paramount mechanism for plants to adjust their physiological and morphological behaviors. Alternative polyadenylation (APA) is known for its capacity to augment transcriptome diversity and plasticity, thereby furnishing an additional set of tools for modulating gene expression. APA has also been demonstrated to exhibit intimate associations with plant stress responses. In this study, we review APA dynamic features and consequences in plants subjected to both biotic and abiotic stresses. These stresses include adverse environmental stresses, and pathogenic attacks, such as cadmium toxicity, high salt, hypoxia, oxidative stress, cold, heat shock, along with bacterial, fungal, and viral infections. We analyzed the overarching research framework employed to elucidate plant APA response and the alignment of polyadenylation site transitions with the modulation of gene expression levels within the ambit of each stress condition. We also proposed a general APA model where transacting factors, including poly(A) factors, epigenetic regulators, RNA m6A modification factors, and phase separation proteins, assume pivotal roles in APA related transcriptome plasticity during stress response in plants. Graphical Abstract

Abstract Background Dendrobium officinale Kimura et Migo (D. officinale) is a well-known traditional Chinese medicine with high content polysaccharides in stems. The SWEET (Sugars Will Eventually be Exported Transporters) family is a novel class of sugar transporters mediating sugar translocation among adjacent cells of plants. The expression patterns of SWEETs and whether they are associated with stress response in D. officinale remains uncovered. Results Here, 25 SWEET genes were screened out from D. officinale genome, most of which typically contained seven transmembrane domains (TMs) and harbored two conserved MtN3/saliva domains. Using multi-omics data and bioinformatic approaches, the evolutionary relationship, conserved motifs, chromosomal location, expression patterns, correlationship and interaction network were further analyzed. DoSWEETs were intensively located in nine chromosomes. Phylogenetic analysis revealed that DoSWEETs were divided into four clades, and conserved motif 3 specifically existed in DoSWEETs from clade II. Different tissue-specific expression patterns of DoSWEETs suggested the division of their roles in sugar transport. In particular, DoSWEET5b, 5c, and 7d displayed relatively high expression levels in stems. DoSWEET2b and 16 were significantly regulated under cold, drought, and MeJA treatment, which were further verified using RT-qPCR. Correlation analysis and interaction network prediction discovered the internal relationship of DoSWEET family. Conclusions Taken together, the identification and analysis of the 25 DoSWEETs in this study provide basic information for further functional verification in D. officinale.

Signalling peptides play a vital role in regulating a wide range of aspects, including plant growth, development, and responses to various biotic and abiotic conditions. In recent times, small post-translationally altered peptides have garnered significant attention from plant biologists due to their crucial role as signalling molecules in various biological processes. Until now, the biological function of peptides containing Tyrosine Sulfation (PSY) gene family members has only been elucidated in Arabidopsis. However, their functions in plant developmental processes and their responses to different biotic and abiotic stress conditions remain elusive in other crops. Therefore, in this study, we identified 109 PSY genes in the rice genome for the first time. However, our detailed in silico analysis focused specifically on 7 OsPSY genes of the O. sativa Japonica Group (Nippobare). Phylogenetic analysis of PSY genes from various plant species has classified these genes into eight distinct groups, designated as Group I to VIII. Interestingly, the 7 OsPSY genes identified in rice were found to be distributed across all four groups including I, V, VI and VIII. In addition, closely linked groups of PSY genes showed more similarities in terms of gene structures, conserved motif distributions, and corresponding subcellular locations. Further, the Ka/Ks score analysis revealed that OsPSY genes have undergone significant purifying selection throughout their evolutionary history. Furthermore, multiple CAREs were discovered in the OsPSY promoters, suggesting their potential importance in regulating plant growth, responses to plant hormones, and multifactorial stress conditions. Additionally, the potential miRNAs that specifically targeted to OsPSY genes were identified and also examined their expression kinetics in different tissues and developmental stage. Out of the seven OsPSY genes, six OsPSY genes were found to be targeted by twelve miRNAs. Moreover the expression profile of OsPSY genes showed a differential expression pattern in various tissues and multifactorial stress conditions. Therefore, these findings serve as a valuable reference for further molecular studies aimed at enhancing the yield and stress tolerance of rice. The understanding the functions and regulatory mechanisms of the OsPSY genes can potentially lead to the development of targeted approaches to improve crop performance under various environmental conditions, ultimately contributing to agricultural productivity and global food security.

The phyllosphere, i.e., the above-ground portion of plants, exhibits an ecological niche for a diverse group of microbes, and the phyllosphere exudates provide proper nutrients, moisture, and pH for the phyllospheric microbes. The phyllosphere colonizing microbes may exhibit negative, positive, or neutral effects on the host plants. Some phyllosphere colonizing bacteria i.e., phyllobacteria show positive interactions with their host plants and improve plant health and productivity by regulating nutrient recycling, secreting phytohormones, and protecting plants from biotic and abiotic stresses. Such plant-beneficial phyllobacteria that improve plant growth, development, and productivity may be called plant growth-promoting phyllobacteria (PGPP). The PGPP are not highly explored compared to the rhizobacteria and are in the investigation phase. Therefore, understanding the interaction of phyllospheric microbes with their host plants is important from a scientific, agricultural, as well as economic point of view. This review provided a brief introduction to plant growth-promoting phyllobacteria and their involvement in plant growth promotion as well as enhancement in crop production in a sustainable manner. This article also summarized the recent research reports and the available knowledge on the application of plant growth-promoting phyllobacteria to sustainable agricultural practices. [ABSTRACT FROM AUTHOR]

Background: GDSL esterase/lipases (GELPs) play important roles in plant growth, development, and response to biotic and abiotic stresses. Presently, an extensive and in-depth analysis of GELP family genes in cotton is still not clear enough, which greatly limits the further understanding of cotton GELP function and regulatory mechanism. Results: A total of 389 GELP family genes were identified in three cotton species of Gossypium hirsutum (193), G. arboreum (97), and G. raimondii (99). These GELPs could be classified into three groups and eight subgroups, with the GELPs in same group to have similar gene structures and conserved motifs. Evolutionary event analysis showed that the GELP family genes tend to be diversified at the spatial dimension and certain conservative at the time dimension, with a trend of potential continuous expansion in the future. The orthologous or paralogous GELPs among different genomes/subgenomes indicated the inheritance from genome-wide duplication during polyploidization, and the paralogous GELPs were derived from chromosomal segment duplication or tandem replication. GELP genes in the A/D subgenome underwent at least three large-scale replication events in the evolutionary process during the period of 0.6—3.2 MYA, with two large-scale evolutionary events between 0.6—1.8 MYA that were associated with tetraploidization, and the large-scale duplication between 2.6—9.1 MYA that occurred during diploidization. The cotton GELPs indicated diverse expression patterns in tissue development, ovule and fiber growth, and in response to biotic and abiotic stresses, combining the existing cis-elements in the promoter regions, suggesting the GELPs involvements of functions to be diversification and of the mechanisms to be a hormone-mediated manner. Conclusions: Our results provide a systematic and comprehensive understanding the function and regulatory mechanism of cotton GELP family, and offer an effective reference for in-depth genetic improvement utilization of cotton GELPs. [ABSTRACT FROM AUTHOR]

Climate change poses a significant threat to the global ecosystem, prompting plants to use various adaptive mechanisms via molecular switches to combat biotic and abiotic stress factors. These switches activate stress-induced pathways by altering their configuration between stable states. In this review, we investigated the regulation of molecular switches in different plant species in response to stress, including the stress-regulated response of multiple switches in Arabidopsis thaliana. We also discussed techniques for developing stress-resilient crops using molecular switches through advanced biotechnological tools. The literature search, conducted using databases such as PubMed, Google Scholar, Web of Science, and SCOPUS, utilized keywords such as molecular switch, plant adaptation, biotic and abiotic stresses, transcription factors, Arabidopsis thaliana, and crop improvement. Recent studies have shown that a single molecular switch can regulate multiple stress networks, and multiple switches can regulate a single stress condition. This multifactorial understanding provides clarity to the switch regulatory network and highlights the interrelationships of different molecular switches. Advanced breeding techniques, along with genomic and biotechnological tools, have paved the way for further research on molecular switches in crop improvement. The use of synthetic biology in molecular switches will lead to a better understanding of plant stress biology and potentially bring forth a new era of stress-resilient, climate-smart crops worldwide. [ABSTRACT FROM AUTHOR]

The development of molecular marker technology in the 1980s changed the fate of plant breeding and greatly complemented crop improvement. The information generated from molecular markers (QTLs mapping and association mapping) and genome sequencing could construct a foundation for the genetic improvement of complex traits in crops through molecular breeding approaches. This review is intended to be a synopsis and up-to-date coverage of achievements and ongoing molecular plant breeding research in the Indian Council of Agriculture Research-Agricultural Universities (ICAR-AUs) for the improvement of biotic and abiotic stress, post-harvest, and nutritional quality attributes in plants. India's contributions to international crop plant genome sequencing initiatives were also covered in this assessment. The challenge of achieving food security and nutritional quality has prompted ICAR-AUs to step up their molecular plant breeding research in recent years. [ABSTRACT FROM AUTHOR]

Cotton (Gossypium spp. L.) is a major origin of natural fiber, and is projected at 117 million bales worldwide for 2021/22. A variety of biotic and abiotic stresses have considerable negative impacts on cotton. The significantly decreased applications of chemical insecticidal sprays in the agro-ecosystem have greatly affected the biodiversity and dynamics of primary and secondary insects. Various control measures were taken around the globe to increase production costs. Temperature, drought, and salinity, and biotic stresses such as bacteria, viruses, fungi, nematodes, insects, and mites cause substantial losses to cotton crops. Here, we summarize a number of biotic and abiotic stresses upsetting Bt cotton crop with present and future biotechnology solution strategies that include a refuge strategy, multi-gene pyramiding, the release of sterile insects, seed mixing, RNAi, CRISPR/Cas9, biotic signaling, and the use of bioagents. Surveillance of insect resistance, monitoring of grower compliance, and implementation of remedial actions can lead to the sustainable use of cotton across the globe. [ABSTRACT FROM AUTHOR]

Plants produce a diverse range of specialized metabolites that play pivotal roles in mediating environmental interactions and stress adaptation. These unique chemical compounds also hold significant agricultural, medicinal, and industrial values. Despite the expanding knowledge of their functions in plant stress interactions, understanding the intricate biosynthetic pathways of these natural products remains challenging due to gene and pathway redundancy, multifunctionality of proteins, and the activity of enzymes with broad substrate specificity. In the past decade, substantial progress in genomics, transcriptomics, metabolomics, and proteomics has made the exploration of plant specialized metabolism more feasible than ever before. Notably, recent advances in integrative multi-omics and computational approaches, along with other technologies, are accelerating the discovery of plant specialized metabolism. In this review, we present a summary of the recent progress in the discovery of plant stress-related specialized metabolites. Emphasis is placed on the application of advanced omics-based approaches and other techniques in studying plant stress-related specialized metabolism. Additionally, we discuss the high-throughput methods for gene functional characterization. These advances hold great promise for harnessing the potential of specialized metabolites to enhance plant stress resilience in the future. [ABSTRACT FROM AUTHOR]

Agricultural crops are exposed to various abiotic and biotic stresses that can constrain crop productivity. Focusing on a limited subset of key groups of organisms has the potential to facilitate the monitoring of the functions of human-managed ecosystems. Endophytic bacteria can enhance plant stress resistance and can help plants to cope with the negative impacts of stress factors through the induction of different mechanisms, influencing plant biochemistry and physiology. In this study, we characterise endophytic bacteria isolated from different plants based on their metabolic activity and ability to synthesise 1-aminocyclopropane-1-carboxylic acid deaminase (ACCD), the activity of hydrolytic exoenzymes, the total phenolic compounds (TPC) and iron-complexing compounds (ICC). Test GEN III MicroPlate indicated that the evaluated endophytes are highly metabolically active, and the best used substrates were amino acids, which may be important in selecting potential carrier components for bacteria in biopreparations. The ACCD activity of strain ES2 (Stenotrophomonas maltophilia) was the highest, whereas that of strain ZR5 (Delftia acidovorans) was the lowest. Overall, the obtained results indicated that ∼91.3% of the isolates were capable of producing at least one of the four hydrolytic enzymes. In addition, most of the tested strains produced ICC and TPC, which play a significant role in reducing stress in plants. The results of this study suggest that the tested endophytic bacterial strains can potentially be used to mitigate climate change-associated stresses in plants and to inhibit plant pathogens. [ABSTRACT FROM AUTHOR]

As immobile organisms, plants perceive external stimuli and respond to them by altering their own signal transduction. Plant hormones function as important signaling molecules in plant responses to different biotic and abiotic stresses in order to regulate plant growth and development and to adapt to changing environments. Jasmonic acid is one of the important hormones in plants, and its synthetic pathways and physiological effects have been studied extensively, but there is still much lack of research on its signal transduction pathways to sense and respond to environmental changes and its interactions with other plant hormones. This paper focuses on the research progress of jasmonic acid in the regulation of plant growth and development, stress response and its interaction with other plant hormones. [ABSTRACT FROM AUTHOR]

Damask rose (Rosa damascena Mill.) is an aromatic medicinal plant also known as 'Gole Mohammadi'. Its cultivation is usually done on a large scale for decorative purposes and industrial uses such as perfumes, pharmaceuticals, culinary, tobacco, etc. Traditionally, the essential oil of Damask rose possesses many therapeutic activities, such as memory enhancement, relief of chest and stomach pain, control of menstrual bleeding, heart-strengthening, cure of constipation and digestive issues. It is important to augment the quantity and quality of essential oil. Treatments of various organic and inorganic fertilizers, plant growth regulators, and newly discovered elicitors on different high-yielding varieties of Damask rose, viz: - Miller cv. Kasan Pink, Yanina, Elenia, Svezheh, Trigintipetala Dieck, Ranisahiba, Noorjahan, Jawala, Super Jwala, Himroj, and Hot Himroj. The demand for Rose essential oil has increased rapidly, and this review paper discusses foliar methods to increase the essential oil and its active or chemical constituents. Foliar application, which is faster than traditional soil fertilization methods and can mitigate various soil problems like acidity, salinity, soil degradation, secondary salinization, and nutrient imbalance. Additionally, foliar application can also be an efficient method to deal with the increasing climatic changes, which have adversely affected Damask rose cultivation and caused deprivation among agriculturalists. In the future, sustainable agricultural fertilizers will be required to reduce the risks associated with Damask rose farming practices. Therefore, foliar application is a promising approach that could be further researched to improve sustainable agricultural practices. [ABSTRACT FROM AUTHOR]

The increasing demand for food is the result of an increasing population. It is crucial to enhance crop yield for sustainable production. Recently, microRNAs (miRNAs) have gained importance because of their involvement in crop productivity by regulating gene transcription in numerous biological processes, such as growth, development and abiotic and biotic stresses. miRNAs are small, non-coding RNA involved in numerous other biological functions in a plant that range from genomic integrity, metabolism, growth, and development to environmental stress response, which collectively influence the agronomic traits of the crop species. Additionally, miRNA families associated with various agronomic properties are conserved across diverse plant species. The miRNA adaptive responses enhance the plants to survive environmental stresses, such as drought, salinity, cold, and heat conditions, as well as biotic stresses, such as pathogens and insect pests. Thus, understanding the detailed mechanism of the potential response of miRNAs during stress response is necessary to promote the agronomic traits of crops. In this review, we updated the details of the functional aspects of miRNAs as potential regulators of various stress-related responses in agronomic plants. [ABSTRACT FROM AUTHOR]