93 results on '"biogeoscience"'
Search Results
2. Blueprinting the ecosystem health index for blue carbon ecotones
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Zhang, Jiaqi and Convertino, Matteo
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- 2024
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3. The impact of elevated CO2 on methanogen abundance and methane emissions in terrestrial ecosystems: A meta-analysis
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Ding, Yiwen, Wang, Mingyu, Du, Xiaojuan, He, Xue, Xu, Tianle, Liu, Xinyu, and Song, Fuqiang
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- 2024
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4. Spatio-temporal variations of methane fluxes in sediments of a deep stratified temperate lake
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Manchun Kang, Liu Liu, and Hans-Peter Grossart
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Earth surface sediment transport ,sediment geochemistry ,Aquatic science ,Biogeoscience ,global carbon cycle ,Science - Abstract
Summary: Spatio-temporal variability of sediment-mediated methane (CH4) production in freshwater lakes causes large uncertainties in predicting global lake CH4 emissions under different climate change and eutrophication scenarios. We conducted extensive sediment incubation experiments to investigate CH4 fluxes in Lake Stechlin, a deep, stratified temperate lake. Our results show contrasting spatial patterns in CH4 fluxes between littoral and profundal sites. The littoral sediments, ∼33% of the total sediment surface area, contributed ∼86.9% of the annual CH4 flux at the sediment-water interface. Together with sediment organic carbon quality, seasonal stratification is responsible for the striking spatial difference in sediment CH4 production between littoral and profundal zones owing to more sensitive CH4 production than oxidation to warming. While profundal sediments produce a relatively small amount of CH4, its production increases markedly as anoxia spreads in late summer. Our measurements indicate that future lake CH4 emissions will increase due to climate warming and concomitant hypoxia/anoxia.
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- 2024
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5. Dynamics of land cover changes and carbon emissions driven by large dams in China
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Liuyue He, Nishan Bhattarai, Yadu Pokhrel, Nan Jia, Peng Zhu, Guanqiong Ye, Zhenci Xu, Shaohua Wu, and Zhongbin B. Li
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Hydrology ,Biogeoscience ,Agricultural land ,Land use ,Science - Abstract
Summary: The recent surge in dam construction has sparked debates regarding their contribution to carbon neutrality and food security, focusing on trade-offs between production benefits and ecological drawbacks. However, how dams affect carbon emissions and land cover changes, including their spatial differentiations, remains unclear. We quantified spatiotemporal variations in carbon emissions and storage of 137 large dams in China from 1992 to 2020, resulting from land cover change in potentially affected areas. We observed a lesser increase in carbon emissions and a more pronounced increase in carbon storage driven by forest conservation and regeneration within dam-affected areas compared to unaffected areas. Additionally, we noticed an increased grain yield in nearby areas potentially due to increased water availability. Our findings highlight the importance of considering land cover change when assessing carbon neutrality or grain yield at regional and national scales. This study provides useful insights into optimizing dam locations to mitigate future carbon emissions effectively.
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- 2024
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6. Calibration and Validation for the Surface Biology and Geology (SBG) Mission Concept: Recommendations for a Multi‐Sensor System for Imaging Spectroscopy and Thermal Imagery.
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Turpie, Kevin R., Casey, Kimberly A., Crawford, Christopher J., Guild, Liane S., Kieffer, Hugh, Lin, Guoqing, Kokaly, Raymond, Shrestha, Alok K., Anderson, Cody, Ramaseri Chandra, Shankar N., Green, Robert, Hook, Simon, Lukashin, Constantine, and Thome, Kurt
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BIOLOGICAL interfaces ,SPECTRAL imaging ,RECOMMENDER systems ,METRIC system ,THERMOGRAPHY ,IMAGE sensors - Abstract
The primary objective of the National Aeronautics and Space Administration (NASA) Surface Biology and Geology (SBG) mission is to measure biological, physical, chemical, and mineralogical features of the Earth's surface, realizing a key conceptual component of the envisioned NASA Earth System Observatory (ESO). SBG is planned to launch as a two‐platform mission in the late 2020s, the first of the ESO satellites. Targeted science and applications objectives based on observations of the Earth's SBG helped to define the mission architecture and instrument capabilities for the SBG mission concept. These objectives further drove the need for enabling change detection and trending of surface biological and geological features. These needs implied fundamental calibration goals to achieve the necessary science data quality characteristics. To meet those goals, calibration and validation pre‐launch and on‐orbit methods formed a basis of the calibration and validation concept, including the combined use of on‐board references, vicarious techniques, and routine lunar imaging. International collaboration with space agencies in other countries, an important feature of the recommended SBG mission architecture, uncovered and emphasized the need for inter‐calibration techniques that underscored the importance of collaborative instrument characterization data sharing and the use of common calibration references that are International System of Units (SI) traceable in pre‐launch and post‐launch on orbit calibration mission phases. International collaboration through the use of terrestrial and aquatic networks on six continents for vicarious calibration and validation activities will further assure necessary science data quality while in orbit. Plain Language Summary: The NASA Surface Biology and Geology (SBG) mission will measure biological, physical, chemical, and mineralogical features of the Earth's surface. Targeted science and applications objectives helped to define the mission architecture and instrument capabilities for the SBG mission concept. These objectives also defined the need to detect changes and trends in biological and geological process on the face of the Earth. To meet these needs and objectives required fundamental calibration and validation concepts to achieve the necessary science data quality characteristics. These concepts included methods and resources used before and after launch. International collaboration with space agencies in other countries, an important feature of the recommended SBG mission architecture, also revealed the need for strong collaboration between agencies. This includes maintaining commonality in terminology, methods, algorithms and references and through the shared use of surface measurement networks on six continents. Key Points: Overviews cal/val ideas recommended for the Surface Biology and Geology (SBG) mission, with some consideration for collaborating with multiple contemporary missionsLooks at approaches to inter‐calibration of multiple Earth orbiting sensorsSurveys what cal/val resources and techniques are currently available or may be available to the SBG mission later in this decade [ABSTRACT FROM AUTHOR]
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- 2023
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7. The fate and mobility of heavy metals in East Anglian salt marsh sediments
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Hutchings, Alec, Turchyn, Alexandra, and Basu, Anirban
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551.9 ,Geochemistry ,Biogeoscience ,Chromium ,Molybdenum ,Salt marsh - Abstract
Measuring the evolution of redox conditions in Earth's atmosphere and oceans through time is a prominent challenge in Earth Sciences. Geochemical proxies in sedimentary rocks used to reconstruct past redox conditions-such as the speciation of iron mineralogy, δ98Mo, and δ53Cr-rely on the assumption that the geochemical signature acquired at the sediment surface is translated directly into the geologic record. In this thesis, I have used East Anglian salt marsh anoxic pond sediments as a modern analogue to test the effect of diagenesis on these paleoredox proxies. This site is particularly applicable because of an intriguing geochemical dichotomy that exists; the anoxic sedimentary porewater beneath ponds either contains high concentrations of ferrous iron or aqueous sulfide, which are somewhat comparable to the ferruginous and euxinic ocean sediments of the mid-Proterozoic respectively. I found that proximity of tidal creeks imparts a first order control on the spatial distribution of sulfide-rich and iron-rich pond sediments. Evidence is provided of a geochemical "switching" from iron-rich pond sediment chemistry to sulfide-rich pond chemistry which is hypothesised to be driven by an accumulation of organic carbon over time. High resolution porewater and sedimentary δ98Mo samples are used to infer the behaviour of Mo within these sediments. The speciation of iron mineralogy is the primary control on Mo distribution in iron-rich pond sediment. Two separate sulfide-rich pond sediments with similar sulfide concentrations have very different δ98Mo profiles; it is hypothesised that these differences reflect the amount of time since that pond sediment was iron-rich. This suggests that sedimentary δ98Mo can be altered during a diagenetic redox change. A method to measure δ53Cr using thermal ionisation mass spectrometry is developed and used to determine the Cr isotope composition of these pond sediments. The δ53Cr in iron-rich and sulfide-rich pond sediment occupies a narrow isotope range which is more similar to oxic marine settings than anoxic marine settings. This implies that the redox conditions of the water column, rather than the sediment porewater, dictates the δ53Cr which is recorded. The reaction of aqueous sulfide with iron minerals is a fundamental diagenetic reaction observed in these salt marsh pond sediments. I used a simple diagenetic model to illustrate how a significant proportion of mid-Proterozoic sedimentary rock samples classified as euxinic using conventional iron speciation classification could be explained by solely diagenetic conversion of iron mineralogy. The work in this thesis addresses the hitherto underappreciated importance of early diagenetic reactions on paleoredox proxies. A better understanding of these reactions will help deconvolve what the actual paleoredox conditions were in the geological past.
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- 2020
8. A World of Cobenefits: Solving the Global Nitrogen Challenge
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Houlton, Benjamin Z, Almaraz, Maya, Aneja, Viney, Austin, Amy T, Bai, Edith, Cassman, Kenneth G, Compton, Jana E, Davidson, Eric A, Erisman, Jan Willem, Galloway, James N, Gu, Baojing, Yao, Guolin, Martinelli, Luiz A, Scow, Kate, Schlesinger, William H, Tomich, Thomas P, Wang, Chao, and Zhang, Xin
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Hydrology ,Climate Change Science ,Earth Sciences ,Zero Hunger ,Climate Action ,nitrogen ,technology ,policy ,climate change ,planetary health ,biogeoscience ,Atmospheric Sciences ,Physical Geography and Environmental Geoscience ,Environmental Science and Management ,Climate change science - Abstract
Nitrogen is a critical component of the economy, food security, and planetary health. Many of the world's sustainability targets hinge on global nitrogen solutions, which, in turn, contribute lasting benefits for: (i) world hunger; (ii) soil, air and water quality; (iii) climate change mitigation; and (iv) biodiversity conservation. Balancing the projected rise in agricultural nitrogen demands while achieving these 21st century ideals will require policies to coordinate solutions among technologies, consumer choice, and socioeconomic transformation.
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- 2019
9. A world of co-benefits: Solving the global nitrogen challenge.
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Houlton, Benjamin Z, Almaraz, Maya, Aneja, Viney, Austin, Amy T, Bai, Edith, Cassman, Kenneth G, Compton, Jana E, Davidson, Eric A, Erisman, Jan Willem, Galloway, James N, Gu, Baojing, Yao, Guolin, Martinelli, Luiz A, Scow, Kate, Schlesinger, William H, Tomich, Thomas P, Wang, Chao, and Zhang, Xin
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Zero Hunger ,Climate Action ,nitrogen ,technology ,policy ,climate change ,planetary health ,biogeoscience ,Atmospheric Sciences ,Physical Geography and Environmental Geoscience ,Environmental Science and Management - Abstract
Nitrogen is a critical component of the economy, food security, and planetary health. Many of the world's sustainability targets hinge on global nitrogen solutions, which, in turn, contribute lasting benefits for: (i) world hunger; (ii) soil, air and water quality; (iii) climate change mitigation; and (iv) biodiversity conservation. Balancing the projected rise in agricultural nitrogen demands while achieving these 21st century ideals will require policies to coordinate solutions among technologies, consumer choice, and socioeconomic transformation.
- Published
- 2019
10. Moss-dominated biocrust-based biodiversity enhances carbon sequestration via water interception and plant-soil-microbe interactions
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Wei Wang, Meng-Ying Li, Rui Zhou, Fei Mo, Bao-Zhong Wang, Li Zhu, Hong-Yan Tao, Ying Zhu, Wen-Li Wang, Ze-Ying Zhao, and You-Cai Xiong
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Soil science ,Biogeoscience ,Agricultural science ,Science - Abstract
Summary: We investigated a nature-based solution (NbS) via incorporating biocrust into alfalfa-maize intercropping system to test carbon sequestration in seriously eroded agricultural soils. Field investigation showed that the NbS (moss-dominated biocrust + intercropping) massively lowered surface soil erosion by 94.5% and soil carbon (C) and nitrogen (N) loss by 94.7 and 96.8% respectively, while promoting rainwater interception by 82.2% relative to bare land (CK). There generally existed positive interactions between biocrust and cropping in the integrated standing biodiversity system. Enhanced plant biomass input into soils substantially promoted soil fungal community diversity and abundance under NbS (p
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- 2023
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11. Distribution of methanogenic and methanotrophic consortia at soil-water interfaces in rice paddies across climate zones
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Sichu Wang, Pengfei Sun, Junzhuo Liu, Ying Xu, Jan Dolfing, and Yonghong Wu
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Global carbon cycle ,Microbiology ,Biogeoscience ,Science - Abstract
Summary: Periphytic biofilms (PB) at the soil-water interface contributes 7–38% of the methane emission from rice paddies, yet the biogeographical mechanism underlying and affecting the process remain elusive. In this study, rice fields along an edapho-vclimatic gradient were sampled, and the environmental drivers affecting distribution of methanogenic and methanotrophic communities were evaluated. The methanogenic and methanotrophic communities at soil-water interface showed less complex inter/intra-generic interactions than those in soil, and their relative abundances were weakly driven by spatial distance, soil organic carbon, soil total nitrogen and pH. The nutrient supply and buffering capacity of extracellular polymeric substance released by PB reduced their interaction and enhanced the resilience on edaphic environment changes. Climate affected soil metal content, extracellular polymeric substance content, and thus the methane-related communities, and caused geographical variation in the impacts of PB on methane emissions from rice paddies. This study facilitates our understanding of geographical differences in the contribution of PB to methane emission.
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- 2023
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12. Expanding the scope of biogeochemical research to accelerate atmospheric carbon capture.
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Silva, Lucas C. R.
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PLANT conservation , *ENDANGERED species , *BIODIVERSITY conservation , *ENVIRONMENTAL psychology , *CLIMATE change mitigation , *ECOLOGICAL succession , *SUSTAINABLE forestry , *CLIMATE change - Abstract
The unfolding climate crisis is in many respects a human issue, one caused by anthropogenic emissions of CO2 to the atmosphere, and that can only be solved through a concerted effort across all sectors of society. In this prospective synthesis, I explain how expanding the scope of biogeochemical research would lead to a more rigorous and impactful climate change mitigation and adaptation agenda. Focusing on biogeochemistry as an area of interdisciplinary convergence, I review theories and empirical studies in the environmental and social sciences, to distill five principles and three phases of implementation for sustainable carbon capture projects. I discuss how land conservation, management, and restoration might be coordinated to prepare for climate change and to achieve multiple social and ecological benefits, including enhanced carbon drawdown and permanence on land. On the conservation front, the abundance of threatened plant and animal species spatially correlates with the distribution of carbon- and water-rich habitats within and across key regions, which can be prioritized for biodiversity protection with major climatic benefits. On the management front, long-term records of socioecological change warrant a revision of current models for sustainable forestry and agriculture in favor of decentralized system-specific prescriptions, including interventions where organic or inorganic carbon capture may improve wood and food production under future climate scenarios. On the restoration front, experiments in degraded landscapes reveal mechanisms of carbon stabilization, such as iron-coordination of organic complexes, which amplify the benefits of ecological succession and lead to carbon accumulation beyond thresholds predicted for undisturbed ecosystems. These examples illustrate the potential for innovation at the intersection of basic and applied biogeoscience, which could accelerate atmospheric carbon capture through new discoveries and collective action. [ABSTRACT FROM AUTHOR]
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- 2022
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13. Potential of tellurite resistance in heterotrophic bacteria from mining environments
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Pedro Farias, Romeu Francisco, and Paula V. Morais
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Biogeoscience ,Microbiology ,Bacteriology ,Science - Abstract
Summary: Untreated mining wastes and improper disposal of high-tech devices generate an environmental increase of bioavailable metalloids, exerting stress on autochthonous microbial populations. Tellurium is a metalloid, an element with raising economic importance; nevertheless, its interaction with living organisms is not yet fully understood. Here we characterized aerobic heterotrophic bacteria, isolated from high metal-content mining residues, able to resist/reduce tellurite into tellurium structures and to determine the presence of confirmed tellurite resistance genetic determinants in resistant strains. We identified over 50 tellurite-resistant strains, among 144 isolates, eight strains reduced tellurite to tellurium at different rates, with the concomitant production of tellurium deposits. Most tellurite resistance genes were found in strains from Bacillales, with the prevalence of genes of the ter operon. This work demonstrated that bacterial isolates, from environments with a persistent selective pressure, are potential candidates for uncovering strategies for tellurite resistance and/or production of valuable Te-containing materials.
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- 2022
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14. The legacy of microbial inoculants in agroecosystems and potential for tackling climate change challenges
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Xipeng Liu, Xavier Le Roux, and Joana Falcão Salles
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Global change ,Biogeoscience ,Microbiology ,Agricultural techniques ,Agricultural soil science ,Science - Abstract
Summary: Microbial inoculations contribute to reducing agricultural systems' environmental footprint by supporting sustainable production and regulating climate change. However, the indirect and cascading effects of microbial inoculants through the reshaping of soil microbiome are largely overlooked. By discussing the underlying mechanisms of plant- and soil-based microbial inoculants, we suggest that a key challenge in microbial inoculation is to understand their legacy on indigenous microbial communities and the corresponding impacts on agroecosystem functions and services relevant to climate change. We explain how these legacy effects on the soil microbiome can be understood by building on the mechanisms driving microbial invasions and placing inoculation into the context of ecological succession and community assembly. Overall, we advocate that generalizing field trials to systematically test inoculants' effectiveness and developing knowledge anchored in the scientific field of biological/microbial invasion are two essential requirements for applying microbial inoculants in agricultural ecosystems to tackle climate change challenges.
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- 2022
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15. The effect of extreme temperatures on soil organic matter decomposition from Atlantic oak forest ecosystems
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Nieves Barros, José Antonio Rodríguez-Añon, Jorge Proupín, and César Pérez-Cruzado
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Earth-surface processes ,Soil science ,Global change ,Biogeoscience ,Science - Abstract
Summary: This work designs a heatwave with a calorimeter to analyze the response of soils from oak forest ecosystems to increasing temperature from 20°C to 60°C and to cooling from 60°C to 20°C. Calorimetry measures the heat rate of the soil organic matter decomposition and the response to increasing and decreasing temperatures directly. It was applied to soil samples representing different soil horizons with organic matter at different degree of decomposition given by their heat of combustion, calculated by differential scanning calorimetry. Results showed temperature-dependent decomposition rates from 20°C to 40°C or 50°C typical for enzymatic activity. From 40°C to 60°C, changes in the rates are less predictable. Data analysis during cooling showed that all samples suffered losses of their enzymatic capacity and that only those with the heat of combustion values close to that of carbohydrates resisted the heat wave.
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- 2021
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16. A World of Cobenefits: Solving the Global Nitrogen Challenge
- Author
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Benjamin Z. Houlton, Maya Almaraz, Viney Aneja, Amy T. Austin, Edith Bai, Kenneth G. Cassman, Jana E. Compton, Eric A. Davidson, Jan Willem Erisman, James N. Galloway, Baojing Gu, Guolin Yao, Luiz A. Martinelli, Kate Scow, William H. Schlesinger, Thomas P. Tomich, Chao Wang, and Xin Zhang
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nitrogen ,technology ,policy ,climate change ,planetary health ,biogeoscience ,Environmental sciences ,GE1-350 ,Ecology ,QH540-549.5 - Abstract
Abstract Nitrogen is a critical component of the economy, food security, and planetary health. Many of the world's sustainability targets hinge on global nitrogen solutions, which, in turn, contribute lasting benefits for (i) world hunger; (ii) soil, air, and water quality; (iii) climate change mitigation; and (iv) biodiversity conservation. Balancing the projected rise in agricultural nitrogen demands while achieving these 21st century ideals will require policies to coordinate solutions among technologies, consumer choice, and socioeconomic transformation.
- Published
- 2019
- Full Text
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17. Magnetotactic Bacteria and Magnetosomes: Basic Properties and Applications.
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Gareev, Kamil G., Grouzdev, Denis S., Kharitonskii, Petr V., Kosterov, Andrei, Koziaeva, Veronika V., Sergienko, Elena S., and Shevtsov, Maxim A.
- Subjects
MAGNETOTACTIC bacteria ,MAGNETOSOMES ,MAGNETIC properties of rocks ,CRYSTAL structure ,SEDIMENTS - Abstract
Magnetotactic bacteria (MTB) belong to several phyla. This class of microorganisms exhibits the ability of magneto-aerotaxis. MTB synthesize biominerals in organelle-like structures called magnetosomes, which contain single-domain crystals of magnetite (Fe3O4) or greigite (Fe3S4) characterized by a high degree of structural and compositional perfection. Magnetosomes from dead MTB could be preserved in sediments (called fossil magnetosomes or magnetofossils). Under certain conditions, magnetofossils are capable of retaining their remanence for millions of years. This accounts for the growing interest in MTB and magnetofossils in paleo- and rock magnetism and in a wider field of biogeoscience. At the same time, high biocompatibility of magnetosomes makes possible their potential use in biomedical applications, including magnetic resonance imaging, hyperthermia, magnetically guided drug delivery, and immunomagnetic analysis. In this review, we attempt to summarize the current state of the art in the field of MTB research and applications. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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18. Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean
- Author
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Hiroto Kaneko, Romain Blanc-Mathieu, Hisashi Endo, Samuel Chaffron, Tom O. Delmont, Morgan Gaia, Nicolas Henry, Rodrigo Hernández-Velázquez, Canh Hao Nguyen, Hiroshi Mamitsuka, Patrick Forterre, Olivier Jaillon, Colomban de Vargas, Matthew B. Sullivan, Curtis A. Suttle, Lionel Guidi, and Hiroyuki Ogata
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Oceanography ,Biogeoscience ,Global Carbon Cycle ,Virology ,Viral Microbiology ,Carbon Cycle ,Science - Abstract
Summary: The biological carbon pump, in which carbon fixed by photosynthesis is exported to the deep ocean through sinking, is a major process in Earth's carbon cycle. The proportion of primary production that is exported is termed the carbon export efficiency (CEE). Based on in-lab or regional scale observations, viruses were previously suggested to affect the CEE (i.e., viral “shunt” and “shuttle”). In this study, we tested associations between viral community composition and CEE measured at a global scale. A regression model based on relative abundance of viral marker genes explained 67% of the variation in CEE. Viruses with high importance in the model were predicted to infect ecologically important hosts. These results are consistent with the view that the viral shunt and shuttle functions at a large scale and further imply that viruses likely act in this process in a way dependent on their hosts and ecosystem dynamics.
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- 2021
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19. Lichens Bite the Dust – A Bioweathering Scenario in the Atacama Desert
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Patrick Jung, Karen Baumann, Dina Emrich, Armin Springer, Vincent J.M.N.L. Felde, Stefan Dultz, Christel Baum, Marcus Frank, Burkhard Büdel, and Peter Leinweber
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Earth sciences ,Geomicrobiology ,Earth-Surface Processes ,Weathering ,Biogeoscience ,Science - Abstract
Summary: Bioweathering mediated by microorganisms plays a significant role in biogeochemical cycles on global scales over geological timescales. Single processes induced by specific taxa have been described but could rarely be demonstrated for complex communities that dominate whole landscapes. The recently discovered grit crust of the coastal Atacama Desert, which is a transitional community between a cryptogamic ground cover and a rock-bound lithic assemblage, offers the unique chance to elucidate various bioweathering processes that occur simultaneously. Here, we present a bioweathering scenario of this biocenosis including processes such as penetration of the lithomatrix, microbial responses to wet-dry cycles, alkalinolysis, enzyme activity, and mineral re-localization. Frequently occurring fog, for example, led to a volume increase of microorganisms and the lithomatrix. This, together with pH shifts and dust accumulation, consequently results in biophysical breakdown and the formation of a terrestrial protopedon, an initial stage of pedogenesis fueled by the grit crust.
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- 2020
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20. Variability in water chemistry of the Three Gorges Reservoir, China
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Hao Wang, Menglu Li, Cece Sun, Wentao Wu, Xiangbin Ran, and Jiaye Zang
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Biogeoscience ,Hydrology ,Geochemistry ,Earth sciences ,Three Gorges Reservoir ,Major ions ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
The environmental influence of the Three Gorges Reservoir (TGR) on the Changjiang River has been widely studied since the Three Gorges Dam (TGD) began operation in 2003. However, the changes in water chemistry in the reservoir in response to damming effect variations are poorly documented in the area of this large reservoir. The results suggest that in comparison to the water chemistry before the TGR operation, the inflow concentrations of Mg2+, K+, Na+ and Cl− increased in the TGR, and the abundance of Ca2+ and HCO3- decreased in the inflow in the period after the TGR filling as a result of climate change and human activities in the Changjiang River basin. The ionic composition in the TGR is primarily controlled by contributions from the upstream region of the Changjiang River but was modified by the interaction between water and rocks within the TGR. The concentrations of most major ions as well as the equivalent ratios of the major ions increased in the TGR after the operation of TGD. This change yielded a 6% increase in the major ion loading downstream of the TGD. The Three Gorges area strongly contributes to the increase in ion loading in the TGR due to enhanced water and rock interactions in comparison with the period before TGD operation.
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- 2020
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21. Risk mapping of human HIV-Leishmaniasis co-infection in Morocco
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M. Daoudi, S. Boussaa, M. Echchakery, and A. Boumezzough
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Biogeoscience ,Bioinformatics ,Ecology ,Microbiology ,Virology ,Environmental health ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Background: HIV/AIDS is frequently associated with opportunistic diseases such as leishmaniasis. Hence, the co-infection HIV-Leishmania spp. is the result of the geographical overlap between leishmaniasis and HIV/AIDS cases. To the best of our knowledge, this is the first report describing the spatial distribution of HIV-Leishmaniasis co-infection in Morocco where both infections are endemic. Methods: In the current study, we discuss the HIV-Leishmania spp. co-infection vulnerability in Morocco by using the cartography tools. Thus, epidemiological data of both infections (Leishmaniasis and HIV/AIDS) in different administrative regions of Morocco were collected and co-registered for Digital maps making. Results & conclusion: The results showed a high risk of HIV-Leishmania infantum co-infection in northern and central regions in Morocco. These results should be taken into account for efficient control strategies and epidemiological surveillance of HIV –Leishmania spp. co-infection in Morocco.
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- 2019
- Full Text
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22. Degradability of chitosan micro/nanoparticles for pulmonary drug delivery
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Nazrul Islam, Isra Dmour, and Mutasem O Taha
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Analytical chemistry ,Bioengineering ,Biogeoscience ,Biomedical engineering ,Cancer research ,Infectious disease ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Chitosan, a natural carbohydrate polymer, has long been investigated for drug delivery and medical applications due to its biodegradability, biocompatibility and low toxicity. The micro/nanoparticulate forms of chitosan are reported to enhance the efficiency of drug delivery with better physicochemical properties including improved solubility and bioavailability. This polymer is known to be biodegradable and biocompatible; however, crosslinked chitosan particles may not be biodegradable. Crosslinkers (e.g., tripolyphosphate and glutaraldehyde) are needed for efficient micro/nanoparticle formation, but it is not clear whether the resultant particles are biodegradable or able to release the encapsulated drug fully. To date, no studies have conclusively demonstrated the complete biodegradation or elimination of chitosan nanoparticles in vivo. Herein we review the synthesis and degradation mechanisms of chitosan micro/nanoparticles frequently used in drug delivery especially in pulmonary drug delivery to understand whether these nanoparticles are biodegradable.
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- 2019
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23. Resource or waste? A perspective of plastics degradation in soil with a focus on end-of-life options
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Riccardo Scalenghe
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Environmental science ,Biogeoscience ,Industry ,Microbiology ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
‘Capable-of-being-shaped’ synthetic compounds are prevailing today over horn, bone, leather, wood, stone, metal, glass, or ceramic in products that were previously left to natural materials. Plastic is, in fact, economical, simple, adaptable, and waterproof. Also, it is durable and resilient to natural degradation (although microbial species capable of degrading plastics do exist). In becoming a waste, plastic accumulation adversely affects ecosystems. The majority of plastic debris pollutes waters, accumulating in oceans. And, the behaviour and the quantity of plastic, which has become waste, are rather well documented in the water, in fact. This review collects existing information on plastics in the soil, paying particular attention to both their degradation and possible re-uses. The use of plastics in agriculture is also considered. The discussion is organised according to their resin type and the identification codes used in recycling programs. In addition, options for post-consumer plastics are considered. Acknowledged indicators do not exist, and future study they will have to identify viable and shared methods to measure the presence and the degradation of individual polymers in soils.
- Published
- 2018
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24. Isolation of halophilic bacteria associated with saline and alkaline-sodic soils by culture dependent approach
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Mariana Delgado-García, Silvia Maribel Contreras-Ramos, Jorge Alberto Rodríguez, Juan Carlos Mateos-Díaz, Cristóbal Noé Aguilar, and Rosa María Camacho-Ruíz
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Biogeoscience ,Biotechnology ,Ecology ,Microbiology ,Geochemistry ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Cultivable halophilic microorganisms were isolated and identified from saline and alkaline-sodic soils: Cuatro Cienegas, Sayula and San Marcos lakes. Physicochemical characteristics of soils were determined to understand the relationship between those and the microorganisms isolated. The Cuatro Cienegas soils had a neutral pH, EC of 2.3–8 dS cm−1, classified as moderately saline. Whereas, the soils from Sayula and San Marcos lakes, had an alkaline pH, EC 15 to 65 dS m−1, typical of saline-sodic. We identified 23 cultivable halophilic bacteria using 16s rDNA, being Halobacillus sp., Marinococcus sp., and Alkalibacillus sp. the predominant genus by culture dependent approach. We found a correlation between the soils anion and cation content with the occurrence of different genus of halophilic bacteria in each studied site. Alkalibacillus sp. was predominant in Sayula and San Marcos lakes and was related to the high Na+ content; while Bacillus sp. and Halobacillus sp. were predominant in Cuatro Cienegas, their occurrence was related to a high content of Ca2+, Mg2+, and SO42-.
- Published
- 2018
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25. High-density element concentrations in fish from subtidal to hadal zones of the Pacific Ocean
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Connor J. Welty, Matthew L. Sousa, Frank M. Dunnivant, and Paul H. Yancey
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Environmental science ,Geochemistry ,Oceanography ,Earth sciences ,Biogeoscience ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Anthropogenic use of high density, toxic elements results in marine pollution which is bio-accumulating throughout marine food webs. While there have been several studies in various locations analyzing such elements in fish, few have investigated patterns in these elements and their isotopes in terms of ocean depth, and none have studied the greatest depth zones. We used a flame atomic absorption spectrophotometer-hydride system and an inductively coupled plasma-mass spectrometer to determine concentrations of the high-density elements arsenic (As), cadmium (Cd), chromium (Cr), cobalt (Co), copper (Cu), lead (Pb), mercury (Hg), nickel (Ni), selenium (Se), plus the light-metal barium (Ba), in fish ranging from bathyal (1000 m in Monterey Bay) to upper hadal zones (6500–7626 m in the Kermadec and Mariana Trenches) in the Pacific Ocean. Five species of fish—including the Mariana Trench snailfish, the world's deepest known fish newly discovered—were analyzed for patterns in total element concentration, depth of occurrence, Se:Hg ratio, plus mercury isotopes in the deepest species. Co and As levels decreased with depth. In the Mariana Trench, Pb, Hg, Cd, and Cu were higher than in all other samples, and higher in those plus Ba than in the Kermadec Trench. The latter samples had far higher Ni and Cr levels than all others. Mercury relative isotope analysis showed no depth trends in the deepest species. Se:Hg showed a large molar excess of Se in bathyal flatfish species. These patterns indicate that exposures to pollutants differ greatly between habitats including trenches of similar depths.
- Published
- 2018
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26. Environmental tipping points for global soil carbon fixation microorganisms.
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Hao Y, Liu H, Li J, Mu L, and Hu X
- Abstract
Carbon fixation microorganisms (CFMs) are important components of the soil carbon cycle. However, the global distribution of CFMs and whether they will exceed the environmental tipping points remain unclear. According to the machine learning models, total carbon content, nitrogen fertilizer, and precipitation play dominant roles in CFM abundance. Obvious stimulation and inhibition effects on CFM abundance only happened at low levels of total carbon and precipitation, where the tipping points were 6.1 g·kg
-1 and 22.38 mm, respectively. The abundance of CFMs in response to nitrogen fertilizer changed from positive to negative (tipping point at 9.45 kg ha-1 ·y-1 ). Approximately 46% of CFM abundance decline happened in cropland at 2100. Our work presents the distribution of carbon-fixing microorganisms on a global scale and then points out the sensitive areas with significant abundance changes. The previously described information will provide references for future soil quality prediction and policy decision-making., Competing Interests: The authors declare no competing financial interests., (© 2023 The Author(s).)- Published
- 2023
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27. Enigmatic relationship between chlorophyll a concentrations and photosynthetic rates at Station ALOHA
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E.A. Laws, R.R. Bidigare, and D.M. Karl
- Subjects
Environmental science ,Biogeoscience ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
An ordinary least squares (OLS) analysis of the relationship between chlorophyll a (chl a) concentrations and photosynthetic rates at depths of 5 and 25 m at Station ALOHA produced a slope that was only 28% of the mean productivity index at those depths and an intercept at zero chl a that equaled 70% of the mean photosynthetic rate. OLS regression lines are known to produce a slope and intercept that are biased estimates of the true slope and intercept when the explanatory variable, X, is uncontrolled, but in this case the measurement errors and natural variability of the chl a concentrations were much too small to explain the apparent bias. The bias was traceable to the fact that the photosynthetic rates were determined by more than one explanatory variable, a source of variability that is typically overlooked in discussions of OLS bias. Modeling the photosynthetic rates as a function of the product of chl a and surface irradiance produced a much more accurate and realistic description of the data, but the OLS continued to be biased, presumably because the photosynthetic rates were functions of factors in addition to chl a and surface irradiance (e.g., temperature, macronutrients, trace metals, and vitamins). The results underscore the need to recognize that the absence of bias in an OLS when X is not controlled implies that all scatter in the data about the OLS is due to errors in the dependent variable, an unlikely scenario. In most cases, resolution of the bias problem will require identification of the explanatory variables in addition to X that determine the dependent variable.
- Published
- 2016
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28. The legacy of microbial inoculants in agroecosystems and potential for tackling climate change challenges
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Agricultural soil science ,Agricultural techniques ,Biogeoscience ,Global change ,Microbiology - Abstract
Microbial inoculations contribute to reducing agricultural systems' environmental footprint by supporting sustainable production and regulating climate change. However, the indirect and cascading effects of microbial inoculants through the reshaping of soil microbiome are largely overlooked. By discussing the underlying mechanisms of plant- and soil-based microbial inoculants, we suggest that a key challenge in microbial inoculation is to understand their legacy on indigenous microbial communities and the corresponding impacts on agroecosystem functions and services relevant to climate change. We explain how these legacy effects on the soil microbiome can be understood by building on the mechanisms driving microbial invasions and placing inoculation into the context of ecological succession and community assembly. Overall, we advocate that generalizing field trials to systematically test inoculants' effectiveness and developing knowledge anchored in the scientific field of biological/microbial invasion are two essential requirements for applying microbial inoculants in agricultural ecosystems to tackle climate change challenges.
- Published
- 2022
29. A world of cobenefits : solving the global nitrogen challenge
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Eric A. Davidson, Benjamin Z. Houlton, Kate M. Scow, Xin Zhang, Amy T. Austin, Jana E. Compton, Edith Bai, Baojing Gu, Jan Willem Erisman, Viney P. Aneja, Kenneth G. Cassman, Luiz Antonio Martinelli, Maya Almaraz, Chao Wang, William H. Schlesinger, Guolin Yao, James N. Galloway, and Thomas P. Tomich
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010504 meteorology & atmospheric sciences ,Natural resource economics ,Consumer choice ,CLIMATE CHANGE ,Biodiversity ,02 engineering and technology ,01 natural sciences ,Physical Geography and Environmental Geoscience ,nitrogen ,purl.org/becyt/ford/1 [https] ,purl.org/becyt/ford/1.5 [https] ,Earth and Planetary Sciences (miscellaneous) ,020701 environmental engineering ,lcsh:Environmental sciences ,SDG 15 - Life on Land ,General Environmental Science ,lcsh:GE1-350 ,Food security ,POLICY ,Planetary health ,climate change ,PLANETARY HEALTH ,EUTROPHICATION ,technology ,Zero Hunger ,biogeoscience ,policy ,Environmental Science and Management ,0207 environmental engineering ,planetary health ,Climate change ,Article ,Atmospheric Sciences ,lcsh:QH540-549.5 ,TECHNOLOGY ,SDG 2 - Zero Hunger ,BIOGEOSCIENCE ,0105 earth and related environmental sciences ,business.industry ,NITROGEN FOOTPRINT ,Climate Action ,NITROGEN ,Climate change mitigation ,Agriculture ,Sustainability ,lcsh:Ecology ,Business - Abstract
Nitrogen is a critical component of the economy, food security, and planetary health. Many of the world's sustainability targets hinge on global nitrogen solutions, which, in turn, contribute lasting benefits for (i) world hunger; (ii) soil, air, and water quality; (iii) climate change mitigation; and (iv) biodiversity conservation. Balancing the projected rise in agricultural nitrogen demands while achieving these 21st century ideals will require policies to coordinate solutions among technologies, consumer choice, and socioeconomic transformation. Fil: Houlton, Benjamin Z.. University of California; Estados Unidos Fil: Almaraz, Maya. University of California; Estados Unidos Fil: Aneja, Viney. North Carolina State University; Estados Unidos Fil: Austin, Amy Theresa. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Fisiológicas y Ecológicas Vinculadas a la Agricultura. Universidad de Buenos Aires. Facultad de Agronomía. Instituto de Investigaciones Fisiológicas y Ecológicas Vinculadas a la Agricultura; Argentina Fil: Bai, Edith. Chinese Academy of Sciences; República de China. Northeast Normal University; China Fil: Cassman, Kenneth G.. University of Nebraska; Estados Unidos Fil: Compton, Jana E.. Environmental Protection Agency; Estados Unidos Fil: Davidson, Eric A.. University of Maryland; Estados Unidos Fil: Willem Erisman, Jan. Department of Earth Sciences; Países Bajos. Louis Bolk Institute; Países Bajos Fil: Galloway, James N.. University of Virginia; Estados Unidos Fil: Gu, Baojing. Zhejiang University; China Fil: Yao, Guolin. University of Maryland; Estados Unidos Fil: Martinelli, Luiz A.. Universidade de Sao Paulo; Brasil Fil: Scow, Kate. University of California; Estados Unidos Fil: Schlesinger, William H.. Cary Institute of Ecosystem Studies; Estados Unidos Fil: Tomich, Thomas P.. University of California; Estados Unidos Fil: Wang, Chao. Chinese Academy of Sciences; República de China Fil: Zhang, Xin. University of Maryland; Estados Unidos
- Published
- 2019
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30. Electron Communication of Bacillus subtilis in Harsh Environments
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Shuhua Wang, Feng Zhao, Changli Cao, Robert C. T. Slade, John R. Varcoe, Claudio Avignone-Rossa, and Lixiang Chen
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0301 basic medicine ,Physiology ,Bioengineering ,02 engineering and technology ,Bacillus subtilis ,Nicotinamide adenine dinucleotide ,Microbiology ,Article ,Cofactor ,03 medical and health sciences ,Electron transfer ,chemistry.chemical_compound ,lcsh:Science ,Multidisciplinary ,biology ,Chemistry ,fungi ,021001 nanoscience & nanotechnology ,biology.organism_classification ,030104 developmental biology ,biology.protein ,Biophysics ,lcsh:Q ,Biogeoscience ,0210 nano-technology ,Biotechnology - Abstract
Summary Elucidating the effect of harsh environments on the activities of microorganisms is important in revealing how microbes withstand unfavorable conditions or evolve mechanisms to counteract those effects, many of which involve electron transfer phenomena. Here we show that the non-acidophilic and non-thermophilic Bacillus subtilis is able to maintain activity after being subjected to extreme temperatures (100°C for up to 8 h) and acidic environments (pH = 1.50 for over 2 years). In the process, our results suggest that B. subtilis utilizes an extracellular electron transfer as an electron communication pathway between B. subtilis and the environment that involves the cofactor nicotinamide adenine dinucleotide as an essential participant to maintain viability. Elucidation of the capability of the non-acidophilic and non-thermophilic strain to maintain viability under these extreme conditions could aid in understanding the cell responses to different environments from the perspective of energy conservation pathways., Graphical Abstract, Highlights • B.subtilis maintains electrochemical activity at pH = 1.50 for over 2 years • B.subtilis maintains electrochemical activity up to 100°C for hours • NAD acts as an essential participant in electron communication of B. subtilis, Physiology; Microbiology; Bioengineering; Biotechnology; Biogeoscience
- Published
- 2019
31. The Fate and Mobility of Heavy Metals in East Anglian Salt Marsh Sediments
- Author
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Hutchings, Alec
- Subjects
Chromium ,Molybdenum ,Salt marsh ,Geochemistry ,FOS: Earth and related environmental sciences ,Biogeoscience - Abstract
Measuring the evolution of redox conditions in Earth���s atmosphere and oceans through time is a prominent challenge in Earth Sciences. Geochemical proxies in sedimentary rocks used to reconstruct past redox conditions���such as the speciation of iron mineralogy, ��98Mo, and ��53Cr���rely on the assumption that the geochemical signature acquired at the sediment surface is translated directly into the geologic record. In this thesis, I have used East Anglian salt marsh anoxic pond sediments as a modern analogue to test the effect of diagenesis on these paleoredox proxies. This site is particularly applicable because of an intriguing geochemical dichotomy that exists; the anoxic sedimentary porewater beneath ponds either contains high concentrations of ferrous iron or aqueous sulfide, which are somewhat comparable to the ferruginous and euxinic ocean sediments of the mid-Proterozoic respectively. I found that proximity of tidal creeks imparts a first order control on the spatial distribution of sulfide-rich and iron-rich pond sediments. Evidence is provided of a geochemical "switching" from iron-rich pond sediment chemistry to sulfide-rich pond chemistry which is hypothesised to be driven by an accumulation of organic carbon over time. High resolution porewater and sedimentary ��98Mo samples are used to infer the behaviour of Mo within these sediments. The speciation of iron mineralogy is the primary control on Mo distribution in iron-rich pond sediment. Two separate sulfide-rich pond sediments with similar sulfide concentrations have very different ��98Mo profiles; it is hypothesised that these differences reflect the amount of time since that pond sediment was iron-rich. This suggests that sedimentary ��98Mo can be altered during a diagenetic redox change. A method to measure ��53Cr using thermal ionisation mass spectrometry is developed and used to determine the Cr isotope composition of these pond sediments. The ��53Cr in iron-rich and sulfide-rich pond sediment occupies a narrow isotope range which is more similar to oxic marine settings than anoxic marine settings. This implies that the redox conditions of the water column, rather than the sediment porewater, dictates the ��53Cr which is recorded. The reaction of aqueous sulfide with iron minerals is a fundamental diagenetic reaction observed in these salt marsh pond sediments. I used a simple diagenetic model to illustrate how a significant proportion of mid-Proterozoic sedimentary rock samples classified as euxinic using conventional iron speciation classification could be explained by solely diagenetic conversion of iron mineralogy. The work in this thesis addresses the hitherto underappreciated importance of early diagenetic reactions on paleoredox proxies. A better understanding of these reactions will help deconvolve what the actual paleoredox conditions were in the geological past.
- Published
- 2021
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32. Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean
- Author
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Hiroshi Mamitsuka, Curtis A. Suttle, Samuel Chaffron, Olivier Jaillon, Lionel Guidi, Romain Blanc-Mathieu, Hisashi Endo, Morgan Gaia, Hiroyuki Ogata, Patrick Forterre, Matthew B. Sullivan, Canh Hao Nguyen, Colomban de Vargas, Hiroto Kaneko, Tom O. Delmont, Nicolas Henry, Rodrigo Hernández-Velázquez, Kyoto University, Physiologie cellulaire et végétale (LPCV), Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Grenoble Alpes (UGA), Laboratoire des Sciences du Numérique de Nantes (LS2N), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-École Centrale de Nantes (ECN)-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT), Global Oceans Systems Ecology & Evolution - Tara Oceans (GOSEE), Université de Perpignan Via Domitia (UPVD)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Aix Marseille Université (AMU)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Université de Toulon (UTLN)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche pour le Développement (IRD [France-Nord])-Ecole Normale Supérieure Paris-Saclay (ENS Paris Saclay)-European Molecular Biology Laboratory (EMBL)-École Centrale de Nantes (Nantes Univ - ECN), Nantes Université (Nantes Univ)-Nantes Université (Nantes Univ)-Université australe du Chili, Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Adaptation et diversité en milieu marin (ADMM), Institut national des sciences de l'Univers (INSU - CNRS)-Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Département de Microbiologie - Department of Microbiology, Institut Pasteur [Paris] (IP), Ohio State University [Columbus] (OSU), University of British Columbia (UBC), Laboratoire d'océanographie de Villefranche (LOV), Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de la Mer de Villefranche (IMEV), We thank the Tara Oceans consortium, the projects Oceanomics and France Genomique (grants ANR-11-BTBR-0008 and ANR-10-INBS-09), and the people and sponsors who supported the Tara Oceans Expedition (http://www.embl.de/tara-oceans/) for making the data accessible. This work was supported by JSPS/KAKENHI (Nos. 26430184, 18H02279, and 19H05667 to H.O. and Nos. 19K15895 and 19H04263 to H.E.), Scientific Research on Innovative Areas from the Ministry of Education, Culture, Science, Sports and Technology (MEXT) of Japan (Nos. 16H06429, 16K21723, and 16H06437 to H.O.), the Collaborative Research Program of the Institute for Chemical Research, Kyoto University (2019-29 to S.C.), the Future Development Funding Program of the Kyoto University Research Coordination Alliance (to R.B.M.), the ICR-KU International Short-term Exchange Program for Young Researchers (to S.C.), and the Research Unit for Development of Global Sustainability (to H.O. and T.O.D.)., ANR-11-BTBR-0008,OCEANOMICS,Biotechnologies et bioressources pour la valorisation des écosystèmes marins planctoniques(2011), ANR-10-INBS-0009,France-Génomique,Organisation et montée en puissance d'une Infrastructure Nationale de Génomique(2010), Kyoto University [Kyoto], Tara Oceans-GOSEE (FR2022), Institut Pasteur [Paris], Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Grenoble Alpes (UGA)-Centre National de la Recherche Scientifique (CNRS), Université de Nantes (UN)-Université de Nantes (UN)-École Centrale de Nantes (ECN)-Centre National de la Recherche Scientifique (CNRS)-IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique), Adaptation et diversité en milieu marin (AD2M), Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Tara Oceans consortium, Japan Society for the promotion of Science JSPS/KAKENHI (Nos. 26430184, 18H02279,19H05667, 19K15895 and 19H04263), Scientific Research on Innovative Areas from the Ministry of Education, Culture, Science, Sports and Technology (MEXT) ofJapan (Nos. 16H06429, 16K21723, and 16H06437), The Collaborative Research Program of the Institute for Chemical Research, Kyoto University (2019-29), The Future Development Funding Program of the Kyoto University Research Coordination Alliance, ICR-KU International Short-term Exchange Program for Young Researchers, Research Unit for Development of Global Sustainability, IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT)-Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-École Centrale de Nantes (ECN)-Centre National de la Recherche Scientifique (CNRS), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay
- Subjects
0301 basic medicine ,0106 biological sciences ,viruses ,02 engineering and technology ,Biology ,Photosynthesis ,Oceanography ,01 natural sciences ,Deep sea ,Article ,Virus ,Carbon cycle ,Carbon Cycle ,03 medical and health sciences ,[SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems ,Virology ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,Viral Microbiology ,14. Life underwater ,lcsh:Science ,Relative species abundance ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,Ecology ,010604 marine biology & hydrobiology ,Global Carbon Cycle ,[SDV.BBM.MN]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular Networks [q-bio.MN] ,021001 nanoscience & nanotechnology ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,030104 developmental biology ,Community composition ,13. Climate action ,Ecosystem dynamics ,lcsh:Q ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,0210 nano-technology ,Biogeoscience ,hormones, hormone substitutes, and hormone antagonists ,[SDV.EE.IEO]Life Sciences [q-bio]/Ecology, environment/Symbiosis - Abstract
Summary The biological carbon pump, in which carbon fixed by photosynthesis is exported to the deep ocean through sinking, is a major process in Earth's carbon cycle. The proportion of primary production that is exported is termed the carbon export efficiency (CEE). Based on in-lab or regional scale observations, viruses were previously suggested to affect the CEE (i.e., viral “shunt” and “shuttle”). In this study, we tested associations between viral community composition and CEE measured at a global scale. A regression model based on relative abundance of viral marker genes explained 67% of the variation in CEE. Viruses with high importance in the model were predicted to infect ecologically important hosts. These results are consistent with the view that the viral shunt and shuttle functions at a large scale and further imply that viruses likely act in this process in a way dependent on their hosts and ecosystem dynamics., Graphical abstract, Highlights • Eukaryotic virus community composition is shown to predict carbon export efficiency • Tens of viruses are highly important in the prediction of the efficiency • These viruses are inferred to infect ecologically important hosts, Oceanography; Biogeoscience; Global Carbon Cycle; Virology; Viral Microbiology; Biogeoscience; Carbon Cycle
- Published
- 2021
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33. Measuring fluxes of trace gases and energy between ecosystems and the atmosphere - the state and future of the eddy covariance method.
- Author
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Baldocchi, Dennis
- Subjects
- *
GAS exchange in plants , *TRACE gases , *ECOSYSTEMS , *EDDY flux , *ANALYSIS of covariance - Abstract
The application of the eddy covariance flux method to measure fluxes of trace gas and energy between ecosystems and the atmosphere has exploded over the past 25 years. This opinion paper provides a perspective on the contributions and future opportunities of the eddy covariance method. First, the paper discusses the pros and cons of this method relative to other methods used to measure the exchange of trace gases between ecosystems and the atmosphere. Second, it discusses how the use of eddy covariance method has grown and evolved. Today, more than 400 flux measurement sites are operating world-wide and the duration of the time series exceed a decade at dozens of sites. Networks of tower sites now enable scientists to ask scientific questions related to climatic and ecological gradients, disturbance, changes in land use, and management. The paper ends with discussions on where the field of flux measurement is heading. Topics discussed include role of open access data sharing and data mining, in this new era of big data, and opportunities new sensors that measure a variety of trace gases, like volatile organic carbon compounds, methane and nitrous oxide, and aerosols, may yield. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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34. Open Access publishing practice in geochemistry: overview of current state and look to the future
- Author
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Karen H. Johannesson, Eric D. van Hullebusch, Romain Tartèse, Marc Poujol, Dasapta Erwin Irawan, Haiyan Liu, Olivier Pourret, Andrew Hursthouse, Oliver Wiche, UniLaSalle, Agro-écologie, Hydrogéochimie, Milieux et Ressources (AGHYLE), Institut Teknologi Bandung (ITB), Tulane University, Géosciences Rennes (GR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)
- Subjects
0301 basic medicine ,media_common.quotation_subject ,Information science ,Geochemistry ,Article processing charge ,Article ,03 medical and health sciences ,0302 clinical medicine ,Green route ,Isotope geochemistry ,State (polity) ,Open access publishing ,[SDU.STU.GC]Sciences of the Universe [physics]/Earth Sciences/Geochemistry ,Political science ,Environmental geochemistry ,lcsh:Social sciences (General) ,lcsh:Science (General) ,Catchment geochemistry ,Dissemination ,media_common ,Multidisciplinary ,Petroleum geochemistry ,business.industry ,Hydrochemistry ,Repository ,Trace element geochemistry ,Open access ,15. Life on land ,Biogeochemistry ,Fossil geochemistry ,Earth sciences ,030104 developmental biology ,Work (electrical) ,13. Climate action ,Publishing ,lcsh:H1-99 ,business ,Biogeoscience ,030217 neurology & neurosurgery ,lcsh:Q1-390 - Abstract
Open Access (OA) describes the free, unrestricted access to and re-use of research articles. Recently, a new wave of interest, debate, and practice surrounding OA publishing has emerged. In this paper, we provide a simple overview of the trends in OA practice in the broad field of geochemistry. Characteristics of the approach such as whether or not an article processing charge (APC) exists, what embargo periods or restrictions on self-archiving’ policies are in place, and whether or not the sharing of preprints is permitted are described. The majority of journals have self-archiving policies that allow authors to share their peer reviewed work via green OA without charge. There is no clear relationship between journal impact and APC. The journals with the highest APC are typically those of the major commercial publishers, rather than the geochemistry community themselves. The rise in OA publishing has potential impacts on the profiles of researchers and tends to devolve costs from organizations to individuals. Until the geochemistry community makes the decision to move away from journal-based evaluation criteria, it is likely that such high costs will continue to impose financial inequities upon research community. However, geochemists could more widely choose legal self-archiving as an equitable and sustainable way to disseminate their research., Open access, Article processing charge, Green route, Repository; Environmental geochemistry; Earth sciences; Geochemistry; Fossil geochemistry; Biogeochemistry; Catchment geochemistry; Isotope geochemistry; Petroleum geochemistry; Trace element geochemistry; Hydrochemistry, Information science, Biogeoscience.
- Published
- 2020
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35. Lichens Bite the Dust : A Bioweathering Scenario in the Atacama Desert
- Author
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Jung, Patrick, Baumann, Karen, Emrich, Dina, Springer, Armin, Felde, Vincent J.M.N.L., Dultz, Stefan, Baum, Christel, Frank, Marcus, Büdel, Burkhard, Leinweber, Peter, Jung, Patrick, Baumann, Karen, Emrich, Dina, Springer, Armin, Felde, Vincent J.M.N.L., Dultz, Stefan, Baum, Christel, Frank, Marcus, Büdel, Burkhard, and Leinweber, Peter
- Abstract
Bioweathering mediated by microorganisms plays a significant role in biogeochemical cycles on global scales over geological timescales. Single processes induced by specific taxa have been described but could rarely be demonstrated for complex communities that dominate whole landscapes. The recently discovered grit crust of the coastal Atacama Desert, which is a transitional community between a cryptogamic ground cover and a rock-bound lithic assemblage, offers the unique chance to elucidate various bioweathering processes that occur simultaneously. Here, we present a bioweathering scenario of this biocenosis including processes such as penetration of the lithomatrix, microbial responses to wet-dry cycles, alkalinolysis, enzyme activity, and mineral re-localization. Frequently occurring fog, for example, led to a volume increase of microorganisms and the lithomatrix. This, together with pH shifts and dust accumulation, consequently results in biophysical breakdown and the formation of a terrestrial protopedon, an initial stage of pedogenesis fueled by the grit crust. © 2020 The Author(s)
- Published
- 2020
36. Warming-induced upslope advance of subalpine forest is severely limited by geomorphic processes.
- Author
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Macias-Fauria, Marc and Johnson, Edward A.
- Subjects
- *
MOUNTAIN plants , *PLANT growth , *FORESTS & forestry , *GEOMORPHOLOGY , *CLIMATE change , *PLANT habitats , *LAND cover , *FRAGMENTED landscapes - Abstract
Forests are expected to expand into alpine areas because of climate warming, causing land-cover change and fragmentation of alpine habitats. However, this expansion will only occur if the present upper treeline is limited by low-growing season temperatures that reduce plant growth. This temperature limitation has not been quantified at a landscape scale. Here, we show that temperature alone cannot realistically explain high-elevation tree cover over a >100-km2 area in the Canadian Rockies and that geologic/geomorphic processes are fundamental to understanding the heterogeneous landscape distribution of trees. Furthermore, upslope tree advance in a warmer scenario will be severely limited by availability of sites with adequate geomorphic/topographic characteristics. Our results imply that landscape-to-regional scale projections of warming-induced, high-elevation forest advance into alpine areas should not be based solely on temperature-sensitive, site-specific upper-treeline studies but also on geomorphic processes that control tree occurrence at long (centuries/millennia) timescales. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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37. Phylogeography of Echinocladius martini Cranston (Diptera: Chironomidae) in closed forest streams of eastern Australia.
- Author
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Krosch, Matthew N.
- Subjects
- *
PHYLOGEOGRAPHY , *CHIRONOMIDAE , *RAIN forests , *VICARIANCE , *FRESHWATER invertebrates - Abstract
The eastern Australian rainforests have experienced several cycles of range contraction and expansion since the late Miocene that are closely correlated with global glaciation events. Together with ongoing aridification of the continent, this has resulted in current distributions of native closed forest that are highly fragmented along the east coast. Several closed forest endemic taxa exhibit patterns of population genetic structure that are congruent with historical isolation of populations in discrete refugia and reflect evolutionary histories dramatically affected by vicariance. Currently, limited data are available regarding the impact of these past climatic fluctuations on freshwater invertebrate taxa. The non-biting midge species Echinocladius martini Cranston is distributed along the east coast and inhabits predominantly montane streams in closed forest habitat. Phylogeographic structure in E. martini was resolved here at a continental scale by incorporating data from a previous pilot study and expanding the sampling design to encompass populations in the Wet Tropics of north-eastern Queensland, south-east Queensland, New South Wales and Victoria. Patterns of phylogeographic structure revealed several deeply divergent mitochondrial lineages from central and south-eastern Australia that were previously unrecognised and were geographically endemic to closed forest refugia. Estimated divergence times were congruent with late Miocene onset of rainforest contractions across the east coast of Australia. This suggested that dispersal and gene flow among E. martini populations isolated in refugia has been highly restricted historically. Moreover, these data imply, in contrast to existing preconceptions about freshwater invertebrates, that this taxon may be acutely susceptible to habitat fragmentation. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
38. Variability in water chemistry of the Three Gorges Reservoir, China
- Author
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Jiaye Zang, Menglu Li, Xiangbin Ran, Wentao Wu, Cece Sun, and Hao Wang
- Subjects
0301 basic medicine ,Inflow ,Structural basin ,Changjiang River (Yangtze River) ,Ionic composition ,Three Gorges Reservoir ,Article ,03 medical and health sciences ,0302 clinical medicine ,Hydrology (agriculture) ,Major ions ,Dissolved silicate ,lcsh:Social sciences (General) ,lcsh:Science (General) ,Three gorges ,Hydrology ,Multidisciplinary ,fungi ,Earth sciences ,030104 developmental biology ,Geochemistry ,Water chemistry ,Environmental science ,lcsh:H1-99 ,Biogeoscience ,030217 neurology & neurosurgery ,Changjiang river ,lcsh:Q1-390 - Abstract
The environmental influence of the Three Gorges Reservoir (TGR) on the Changjiang River has been widely studied since the Three Gorges Dam (TGD) began operation in 2003. However, the changes in water chemistry in the reservoir in response to damming effect variations are poorly documented in the area of this large reservoir. The results suggest that in comparison to the water chemistry before the TGR operation, the inflow concentrations of Mg2+, K+, Na+ and Cl− increased in the TGR, and the abundance of Ca2+ and HCO3- decreased in the inflow in the period after the TGR filling as a result of climate change and human activities in the Changjiang River basin. The ionic composition in the TGR is primarily controlled by contributions from the upstream region of the Changjiang River but was modified by the interaction between water and rocks within the TGR. The concentrations of most major ions as well as the equivalent ratios of the major ions increased in the TGR after the operation of TGD. This change yielded a 6% increase in the major ion loading downstream of the TGD. The Three Gorges area strongly contributes to the increase in ion loading in the TGR due to enhanced water and rock interactions in comparison with the period before TGD operation., Biogeoscience; Hydrology; Geochemistry; Earth sciences; Three Gorges Reservoir; Major ions; Dissolved silicate; Changjiang River (Yangtze River)
- Published
- 2019
39. Degradability of chitosan micro/nanoparticles for pulmonary drug delivery
- Author
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Mutasem O. Taha, Isra Dmour, and Nazrul Islam
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0301 basic medicine ,Drug ,Biocompatibility ,media_common.quotation_subject ,Nanoparticle ,Nanotechnology ,Bioengineering ,macromolecular substances ,Cancer research ,Article ,Chitosan ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,lcsh:Social sciences (General) ,lcsh:Science (General) ,media_common ,Infectious disease ,Multidisciplinary ,technology, industry, and agriculture ,Biodegradation ,Bioavailability ,030104 developmental biology ,chemistry ,Physical chemistry ,Drug delivery ,lcsh:H1-99 ,Materials chemistry ,Glutaraldehyde ,Biogeoscience ,Analytical chemistry ,Biomedical engineering ,Pharmaceutical chemistry ,030217 neurology & neurosurgery ,lcsh:Q1-390 - Abstract
Chitosan, a natural carbohydrate polymer, has long been investigated for drug delivery and medical applications due to its biodegradability, biocompatibility and low toxicity. The micro/nanoparticulate forms of chitosan are reported to enhance the efficiency of drug delivery with better physicochemical properties including improved solubility and bioavailability. This polymer is known to be biodegradable and biocompatible; however, crosslinked chitosan particles may not be biodegradable. Crosslinkers (e.g., tripolyphosphate and glutaraldehyde) are needed for efficient micro/nanoparticle formation, but it is not clear whether the resultant particles are biodegradable or able to release the encapsulated drug fully. To date, no studies have conclusively demonstrated the complete biodegradation or elimination of chitosan nanoparticles in vivo. Herein we review the synthesis and degradation mechanisms of chitosan micro/nanoparticles frequently used in drug delivery especially in pulmonary drug delivery to understand whether these nanoparticles are biodegradable.
- Published
- 2019
40. Coral Reef Microorganisms in a Changing Climate
- Author
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Nicole S. Webster and Inka Vanwonterghem
- Subjects
0301 basic medicine ,Biogeochemical cycle ,media_common.quotation_subject ,Review ,02 engineering and technology ,Microbiology ,03 medical and health sciences ,Ecosystem ,Microbiome ,lcsh:Science ,Reef ,media_common ,geography ,Multidisciplinary ,geography.geographical_feature_category ,Ecology ,Global Nutrient Cycle ,Coral reef ,021001 nanoscience & nanotechnology ,Holobiont ,030104 developmental biology ,Habitat ,Environmental science ,lcsh:Q ,Psychological resilience ,Biogeoscience ,0210 nano-technology - Abstract
Coral reefs are one of the most diverse and productive ecosystems on the planet, yet they have suffered tremendous losses due to anthropogenic disturbances and are predicted to be one of the most adversely affected habitats under future climate change conditions. Coral reefs can be viewed as microbially driven ecosystems that rely on the efficient capture, retention, and recycling of nutrients in order to thrive in oligotrophic waters. Microorganisms play vital roles in maintaining holobiont health and ecosystem resilience under environmental stress; however, they are also key players in positive feedback loops that intensify coral reef decline, with cascading effects on biogeochemical cycles and marine food webs. There is an urgent need to develop a fundamental understanding of the complex microbial interactions within coral reefs and their role in ecosystem acclimatization, and it is important to include microorganisms in reef conservation in order to secure a future for these unique environments., Graphical Abstract, Microbiology; Microbiome; Biogeoscience; Global Nutrient Cycle
- Published
- 2020
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41. Succession Patterns and Physical Niche Partitioning in Microbial Communities from Subsurface Coal Seams
- Author
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Silas H.W. Vick, Neil Sherwood, Paul Greenfield, Kaydy Pinetown, Sasha G. Tetu, Se Gong, Ian T. Paulsen, and David J. Midgley
- Subjects
0301 basic medicine ,Earth science ,02 engineering and technology ,Ecological succession ,complex mixtures ,Microbiology ,Article ,03 medical and health sciences ,Microbial ecology ,otorhinolaryngologic diseases ,Coal ,lcsh:Science ,Multidisciplinary ,business.industry ,Niche differentiation ,Coal mining ,technology, industry, and agriculture ,Coal Geochemistry ,Biosphere ,Plankton ,respiratory system ,021001 nanoscience & nanotechnology ,respiratory tract diseases ,030104 developmental biology ,Environmental science ,lcsh:Q ,Microbiome ,0210 nano-technology ,business ,Biogeoscience - Abstract
Summary The subsurface represents a largely unexplored frontier in microbiology. Here, coal seams present something of an oasis for microbial life, providing moisture, warmth, and abundant fossilized organic material. Microbes in coal seams are thought to syntrophically mobilize fossilized carbon from the geosphere to the biosphere. Despite the environmental and economic importance of this process, little is known about the microbial ecology of coal seams. In the current study, ecological succession and spatial niche partitioning are explored in three coal seam microbial communities. Scanning electron microscopic visualization and 16S rRNA sequencing track changes in microbial communities over time, revealing distinct attached and planktonic communities displaying patterns of ecological succession. Attachment to the coal surface is biofilm mediated on Surat coal, whereas microbes on Sydney and Gunnedah coal show different attachment processes. This study demonstrates that coal seam microbial communities undergo spatial niche partitioning during periods of succession as microbes colonize coal environments., Graphical Abstract, Highlights • Coal surfaces and waters have distinctly different microbial communities • Microbes attach to coal surfaces via multiple adhesion strategies • Adhesion strategies include biofilm formation and direct cell attachment • Coal microbe succession patterns provide insights into possible community roles, Coal Geochemistry; Biogeoscience; Microbiology; Microbiome
- Published
- 2018
42. Landscape Controls of Complex Terrain and Vegetation Heterogeneity on Carbon Cycling in a Humid, Temperate Watershed in West Virginia
- Author
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Atkins, Jeffrey
- Subjects
Hydrology ,landsat ,ved/biology ,carbon ,ved/biology.organism_classification_rank.species ,eastern US forests ,carbon cycling ,Vegetation ,Soil carbon ,West Virginia ,Evergreen ,rhododendron ,Shrub ,shrub expansion ,Carbon cycle ,Spatial heterogeneity ,remote sensing ,Soil water ,ndvi ,Environmental science ,ecology ,environmental sciences ,biogeoscience ,Water content - Abstract
In topographically complex terrain, the spatial heterogeneity of carbon cycling is affected by vegetation heterogeneity and landscape position through the lateral and vertical redistribution of soil water. Vegetation affects carbon cycling directly through photosynthesis, tissue allocation, respiration, and litter production, but also by mediating abiotic environmental factors such as soil temperature, soil moisture, and available light. In areas of topographic complexity, such as mountain catchments, the landscape can laterally redirect soil water, resulting in areas of convergent and divergent soil moisture that create spatial heterogeneities in carbon fluxes. Our knowledge of how vegetation interacts with landscape position to affect carbon cycling within areas of cool, humid watersheds is lacking. Further, we must also understand how these systems are changing and the possible impacts of climate and climatic variability. Here I address this knowledge gap in three ways: 1) by examining landscape controls on surface soil carbon fluxes and response to inter-annual climate variability; 2) examining the landscape controls on litter decomposition, nitrogen availability, and the organic layer; 3) characterizing the spatial and temporal dynamics of the evergreen shrub community. The major findings of my dissertation are that 1) surface soil CO2 fluxes are greater beneath evergreen shrubs across all elevations for the three years measured—a result driven not only by differences in soil moisture and soil temperature beneath shrubs, but also by differences in soil chemical and physical properties; 2) fluxes are constrained during periods of greater soil moisture, with soil moisture responding strongly to varying annual precipitation, resulting in variability of soil CO2 fluxes; 3) litter decomposition is predominately controlled by elevation with seasonal differences possibility related to snow cover; 4) nitrogen availability is controlled by vegetation, with areas of greater availability beneath closed forest canopies—driven by differences in nitrate abundance; 5) evergreen shrub cover in the study watershed is increasing, with the greatest increases at low and mid elevations and along southerly aspects—areas that were once water-limited on the landscape.
- Published
- 2016
- Full Text
- View/download PDF
43. A multi-approach assessment of land use effects on groundwater quality in a karstic aquifer.
- Author
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Smith DNI, Ortega-Camacho D, Acosta-González G, Leal-Bautista RM, Fox WE 3rd, and Cejudo E
- Abstract
Groundwater represents almost half of the drinking water worldwide and more than one third of water used for irrigation. Agro-industrial activities affect water resources in several manners; one of the most important is leaching of agrochemical residues. This research identifies the major contributors of changes in groundwater quality comparing two contrasting land uses in a karstic area of the Yucatan peninsula as case study. Using a multiple approach, we assess the impact of land use with physicochemical data, multivariate analyses, hydrogeochemistry and nitrate isotopic composition. We confirmed that agricultural land use has a greater impact on groundwater quality, observed in higher concentration of nitrates, ammonium, potassium and electrical conductivity. Seasonality has an influence on phosphates and the chemical composition of the groundwater, increasing the concentration of dissolved substances in the rainy season. There was a clear effect of manure application in the agricultural zone and the nitrate isotopic composition of groundwater points toward recharge in certain areas. We consider that seasonality and land use effects are intertwined and sometimes difficult to separate, likely because of land use intensity and hydrogeochemical process at a local scale. Finally, we observed poor groundwater quality in the agricultural area during the wet season; thus, it is desirable to maintain non-agricultural areas that provide groundwater of appropriate quality., (© 2020 The Author(s).)
- Published
- 2020
- Full Text
- View/download PDF
44. Open Access publishing practice in geochemistry: overview of current state and look to the future.
- Author
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Pourret O, Hursthouse A, Irawan DE, Johannesson K, Liu H, Poujol M, Tartèse R, van Hullebusch ED, and Wiche O
- Abstract
Open Access (OA) describes the free, unrestricted access to and re-use of research articles. Recently, a new wave of interest, debate, and practice surrounding OA publishing has emerged. In this paper, we provide a simple overview of the trends in OA practice in the broad field of geochemistry. Characteristics of the approach such as whether or not an article processing charge (APC) exists, what embargo periods or restrictions on self-archiving' policies are in place, and whether or not the sharing of preprints is permitted are described. The majority of journals have self-archiving policies that allow authors to share their peer reviewed work via green OA without charge. There is no clear relationship between journal impact and APC. The journals with the highest APC are typically those of the major commercial publishers, rather than the geochemistry community themselves. The rise in OA publishing has potential impacts on the profiles of researchers and tends to devolve costs from organizations to individuals. Until the geochemistry community makes the decision to move away from journal-based evaluation criteria, it is likely that such high costs will continue to impose financial inequities upon research community. However, geochemists could more widely choose legal self-archiving as an equitable and sustainable way to disseminate their research., (© 2020 Published by Elsevier Ltd.)
- Published
- 2020
- Full Text
- View/download PDF
45. A biogeoscience view of ecosystems.
- Author
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Swanson, Frederick J.
- Subjects
- *
ECOLOGY in literature , *NONFICTION - Published
- 2017
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46. Grand challenges in biogeoscience
- Author
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Timothy I. Eglinton
- Subjects
History ,Earth science ,Biogeoscience ,Global change ,Biogeochemical cycles ,Biogeochemical modeling ,Observatory science ,Earth surface processes ,Microbial interactions ,Environmental biogeochemistry ,carbon cycling ,Interconnectedness ,Interdisciplinary ,Earth Science ,lcsh:Science ,Grand Challenges ,Critical zone ,Biogeochemistry ,Environmental ethics ,Ocean biogeochemistry ,Term (time) ,General Earth and Planetary Sciences ,Conviction ,lcsh:Q - Abstract
“The term ‘holistic’ refers to my conviction that what we are concerned with here is the fundamental interconnectedness of all things”…. “I see the solution to each problem as being detectable in the pattern and web of the whole. The connections between causes and effects are often much more subtle and complex than we with our rough and ready understanding of the physical world might naturally suppose…” These quotes are from Dirk Gently's Holistic Detective Agency (1987) by the late Douglas Adams (author of The Hitchhiker's Guide to the Galaxy). Mr. Gently is a “holistic detective,” a fictional character dwelling in a fantasy world, but in many ways he bears all the hallmarks of a biogeoscientist, as we too, seek answers to multidimensional, multifaceted—and interconnected—problems! (Adams, 1987). In addition to its broad scope, the remit of biogeoscience constitutes a fundamental scientific endeavor that is of critical importance for our understanding of the Earth system, and especially its response to natural and anthropogenic perturbations. It appears clear that we are now well into the Anthropocene (e.g., Crutzen and Steffen, 2003), and we urgently need to understand better how our world operates if we are to define the limits of human existence on this planet (Rockstrom, 2009; Running, 2012; Steffen et al., 2015), and predict, and possibly mitigate, future change. Life is a pervasive force, orchestrating or widely participating in a myriad of processes at the Earth's surface, and the field of biogeoscience, focused on the interaction between life and the physical environment (Martin and Johnson, 2012), is thus central to this issue. This is perhaps most grandly articulated in the “Gaia” hypothesis—namely that physical and biological processes are closely interwoven, forming a self-regulating system with feedbacks that keep the Earth in balance (Lovelock and Margulis, 1974). While Gaia theory remains controversial, and indeed other hypotheses argue for a more sinister role for life on this planet (e.g., Ward, 2009), the concept has come to symbolize the Earth as a highly complex, interconnected system. Biogeoscience epitomizes fields of science that witness exciting advances at the interfaces with other scientific disciplines. Indeed, biogeoscience is all about interfaces—the interface between the biotic and abiotic world (the lithosphere, hydrosphere, and atmosphere), between organic and inorganic realms, and between processes that span enormous spatial and temporal scales. It is a nexus where numerous perspectives meet under a common theme of seeking to understand how biotic processes are influenced by and shape today's world, how they have operated and co-evolved in the past, and how they may respond to and influence future conditions and human pressures on this planet. Intermingled anthropogenic and natural forces add yet another layer of complexity and dynamism. Here, I highlight a few crosscutting themes that present common grand challenges., Frontiers in Earth Science, 3, ISSN:2296-6463
- Published
- 2015
47. Succession Patterns and Physical Niche Partitioning in Microbial Communities from Subsurface Coal Seams.
- Author
-
Vick SHW, Greenfield P, Pinetown KL, Sherwood N, Gong S, Tetu SG, Midgley DJ, and Paulsen IT
- Abstract
The subsurface represents a largely unexplored frontier in microbiology. Here, coal seams present something of an oasis for microbial life, providing moisture, warmth, and abundant fossilized organic material. Microbes in coal seams are thought to syntrophically mobilize fossilized carbon from the geosphere to the biosphere. Despite the environmental and economic importance of this process, little is known about the microbial ecology of coal seams. In the current study, ecological succession and spatial niche partitioning are explored in three coal seam microbial communities. Scanning electron microscopic visualization and 16S rRNA sequencing track changes in microbial communities over time, revealing distinct attached and planktonic communities displaying patterns of ecological succession. Attachment to the coal surface is biofilm mediated on Surat coal, whereas microbes on Sydney and Gunnedah coal show different attachment processes. This study demonstrates that coal seam microbial communities undergo spatial niche partitioning during periods of succession as microbes colonize coal environments., (Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
48. Electron Communication of Bacillus subtilis in Harsh Environments.
- Author
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Chen L, Cao C, Wang S, Varcoe JR, Slade RCT, Avignone-Rossa C, and Zhao F
- Abstract
Elucidating the effect of harsh environments on the activities of microorganisms is important in revealing how microbes withstand unfavorable conditions or evolve mechanisms to counteract those effects, many of which involve electron transfer phenomena. Here we show that the non-acidophilic and non-thermophilic Bacillus subtilis is able to maintain activity after being subjected to extreme temperatures (100°C for up to 8 h) and acidic environments (pH = 1.50 for over 2 years). In the process, our results suggest that B. subtilis utilizes an extracellular electron transfer as an electron communication pathway between B. subtilis and the environment that involves the cofactor nicotinamide adenine dinucleotide as an essential participant to maintain viability. Elucidation of the capability of the non-acidophilic and non-thermophilic strain to maintain viability under these extreme conditions could aid in understanding the cell responses to different environments from the perspective of energy conservation pathways., (Copyright © 2019 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2019
- Full Text
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49. Biosignatures in rocks
- Author
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Frances Westall, Barbara Cavalazzi, Centre de biophysique moléculaire (CBM), Université d'Orléans (UO)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC), Reitner, Joachim, Thiel, Volker, Frapart, Isabelle, Reitner, Joachim, Thiel, Volker, Reitner J., Thiel V., Fritz H. W., Kappler A., Konhauser K., Reid P., Zhang X., Reitner, J. V. Thiel, Westall F., and Cavalazzi B.
- Subjects
010504 meteorology & atmospheric sciences ,Origin of Life ,Geology ,Biogeochemistry ,010502 geochemistry & geophysics ,PALEOBIOLOGY ,Astrobiology ,01 natural sciences ,Microbiology ,Geobiology ,13. Climate action ,MICROFOSSILS ,Biogeoscience ,0105 earth and related environmental sciences - Abstract
The interplay between Geology and Biology has shaped the Earth from the early Precambrian, 4 billion years ago. Moving beyond the borders of the classical core disciplines, Geobiology strives to identify cause-and-effect chains and synergisms between the geo- and the biospheres that have been driving evolution of life in modern and ancient environments. Combining modern methods, geobiological information can be extracted not only from visible remains of organisms, but also from organic molecules, rock fabrics, minerals, isotopes and other tracers. Exploring these processes and their signatures also creates enormous applied potentials with respect to issues of environment protection, public health, energy and resource management. The Encyclopedia of Geobiology is designed as a key reference for students, researchers, teachers, and the informed public to provide basic, but comprehensible knowledge on this rapidly expanding discipline at the interface between modern geo- and biosciences.
- Published
- 2011
50. Infection Dynamics of a Bloom-Forming Alga and Its Virus Determine Airborne Coccolith Emission from Seawater.
- Author
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Trainic M, Koren I, Sharoni S, Frada M, Segev L, Rudich Y, and Vardi A
- Abstract
Sea spray aerosols (SSA), have a profound effect on the climate; however, the contribution of oceanic microbial activity to SSA is not fully established. We assessed aerosolization of the calcite units (coccoliths) that compose the exoskeleton of the cosmopolitan bloom-forming coccolithophore, Emiliania huxleyi. Airborne coccolith emission occurs in steady-state conditions and increases by an order of magnitude during E. huxleyi infection by E. huxleyi virus (EhV). Airborne to seawater coccolith ratio is 1:10
8 , providing estimation of airborne concentrations from seawater concentrations. The coccoliths' unique aerodynamic structure yields a characteristic settling velocity of ∼0.01 cm s-1 , ∼25 times slower than average sea salt particles, resulting in coccolith fraction enrichment in the air. The calculated enrichment was established experimentally, indicating that coccoliths may be key contributors to coarse mode SSA surface area, comparable with sea salt aerosols. This study suggests a coupling between key oceanic microbial interactions and fundamental atmospheric processes like SSA formation., (Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved.)- Published
- 2018
- Full Text
- View/download PDF
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