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Abstract Background Agricultural development of former wetlands has resulted in many headwater streams being sourced by subsurface agricultural drainage systems. Subsurface drainage inputs can significantly influence stream environmental conditions, such as temperature, hydrology, and water chemistry, that drive ecological function. However, ecological assessments of subsurface drainage impacts are rare. We assessed the impact of an agricultural drainage system on cellulose decomposition and benthic respiration using a paired stream study in a headwater branch of Nissouri Creek, in Ontario, Canada. Adjacent first order segments sourced by a spring-fed marsh and a cropped field with subsurface drainage, as well as the adjoining trunk segment, were sampled over a year using the cotton strip assay to measure cellulose decomposition and benthic respiration. Results Assessments of cellulose decomposition revealed a one-third reduction in the drainage-sourced segment compared to marsh-sourced segment. Between segment differences in cellulose decomposition were associated with reduced summer temperatures in the drainage-sourced segment. Impacts of stream cooling from the drainage-sourced segment were transmitted downstream as cellulose decomposition was slower than expected throughout the drainage-sourced segment and for several hundred meters down the adjoining trunk segment. Benthic respiration only differed between the drainage- and marsh-sourced segments in spring, when stream temperatures were similar. Conclusions Our findings suggest there may be a widespread reduction in cellulose decomposition in streams across similar agricultural regions where subsurface drainage is prevalent. However, cooling of streams receiving significant amounts of water inputs from subsurface drainage systems may impart increased resiliency to future climate warming.

Background: Agricultural development of former wetlands has resulted in many headwater streams being sourced by subsurface agricultural drainage systems. Subsurface drainage inputs can significantly influence stream environmental conditions, such as temperature, hydrology, and water chemistry, that drive ecological function. However, ecological assessments of subsurface drainage impacts are rare. We assessed the impact of an agricultural drainage system on cellulose decomposition and benthic respiration using a paired stream study in a headwater branch of Nissouri Creek, in Ontario, Canada. Adjacent first order segments sourced by a spring-fed marsh and a cropped field with subsurface drainage, as well as the adjoining trunk segment, were sampled over a year using the cotton strip assay to measure cellulose decomposition and benthic respiration. Results: Assessments of cellulose decomposition revealed a one-third reduction in the drainage-sourced segment compared to marsh-sourced segment. Between segment differences in cellulose decomposition were associated with reduced summer temperatures in the drainage-sourced segment. Impacts of stream cooling from the drainage-sourced segment were transmitted downstream as cellulose decomposition was slower than expected throughout the drainage-sourced segment and for several hundred meters down the adjoining trunk segment. Benthic respiration only differed between the drainage- and marsh-sourced segments in spring, when stream temperatures were similar. Conclusions: Our findings suggest there may be a widespread reduction in cellulose decomposition in streams across similar agricultural regions where subsurface drainage is prevalent. However, cooling of streams receiving significant amounts of water inputs from subsurface drainage systems may impart increased resiliency to future climate warming. [ABSTRACT FROM AUTHOR]

During the summer the Arabian Gulf is the world's warmest sea, also characterized by hypersalinity and extreme annual temperature fluctuations (12–35oC), making it marginal for coral growth. Yet extensive reefs occur in all eight nations bordering the Gulf. Here we present data demonstrating recurrent summer hypoxia events [oxygen concentration (O2)

The effects of anthropogenic pressures in coastal areas are extensively studied in temperate but not in tropical zones, where their impact might be amplified by high water temperatures and upwelling phenomena. Sedimentary features and benthic metabolism were studied during the non upwelling (NUPW) and upwelling (UPW) seasons in Taganga Bay (Colombia). The bay is impacted by a submarine outfall of virtually untreated, organic and nutrient-rich wastewater. Samplings were performed in November 2017 (NUPW) and in January–February 2018 (UPW) at 4 stations located in the proximity and 100, 750 and 1800 m far from the outfall, respectively, at depths between 22 and 28 m. Aerobic respiration, denitrification, dissimilative nitrate reduction to ammonium (DNRA) and nutrient fluxes were measured. The influence of the outfall was detectable 750 and 1800 m away from the point pollution source, where δ13C data suggested that ~ 40 and ~ 20% of organic inputs were terrigenous, respectively. In the proximity of the outfall benthic oxygen demand peaked and the presence of Beggiatoa mats suggested reoxidation of sulphides, that were abundant in pore water. Under sulfidic conditions, DNRA was the major driver of nitrate demand, whereas at stations far from the outfall, denitrification dominated nitrate consumption. Organic matter and nitrate inputs to the bay during the UPW season enhanced the effects of the outfall by increasing aerobic respiration and DNRA. Higher N availability during the UPW season reversed fluxes of molecular nitrogen and turned the sediments of 3 out of 4 sites from net sinks to net N2 sources. Results from this study suggest that the analysis of sediments allows tracing the impact of the outfall and that such impact is enhanced during the upwelling season. In tropical areas, marine outfalls and upwelling may act in synergy and contribute to ecosystem deterioration due to high temperatures, increase of microbial respiration, sulphide toxicity and benthic biodiversity loss. [ABSTRACT FROM AUTHOR]

Cold-water coral (CWC) reefs are distributed globally and form complex three-dimensional structures on the deep seafloor, providing habitat for numerous species. Here, we measured the community O2 and dissolved inorganic nitrogen (DIN) flux of CWC reef habitats with different coral cover and bare sediment (acting as reference site) in the Logachev mound area (NE Atlantic). Two methodologies were applied: the non-invasive in situ aquatic eddy co-variance (AEC) technique, and ex situ whole box core (BC) incubations. The AEC system was deployed twice per coral mound (69 h in total), providing an integral estimate of the O2 flux from a total reef area of up to 500 m2, with mean O2 consumption rates ranging from 11.6 ± 3.9 to 45.3 ± 11.7 mmol O2 m–2 d–1 (mean ± SE). CWC reef community O2 fluxes obtained from the BC incubations ranged from 5.7 ± 0.3 to 28.4 ± 2.4 mmol O2 m–2 d–1 (mean ± SD) while the O2 flux measured by BC incubations on the bare sediment reference site reported 1.9 ± 1.3 mmol O2 m–2 d–1 (mean ± SD). Overall, O2 fluxes measured with AEC and BC showed reasonable agreement, except for one station with high habitat heterogeneity. Our results suggest O2 fluxes of CWC reef communities in the North East Atlantic are around five times higher than of sediments from comparable depths and living CWCs are driving the increased metabolism. DIN flux measurements by the BC incubations also revealed around two times higher DIN fluxes at the CWC reef (1.17 ± 0.87 mmol DIN m–2 d–1), compared to the bare sediment reference site (0.49 ± 0.32 mmol DIN m–2 d–1), due to intensified benthic release of NH4+. Our data indicate that the amount of living corals and dead coral framework largely contributes to the observed variability in O2 fluxes on CWC reefs. A conservative estimate, based on the measured O2 and DIN fluxes, indicates that CWC reefs process 20 to 35% of the total benthic respiration on the southeasterly Rockall Bank area, which demonstrates that CWC reefs are important to carbon and nitrogen mineralization at the habitat scale.

Abstract The sediment in Laguna de Términos, the largest and shallowest system in the Southwest portion of the Gulf of Mexico features a broad range of ecological and hydrobiological characteristics driven by annual weather cycles (dry and wet seasons), causing large salinity gradients during the wet season due to large river discharges. Four sampling campaigns were carried out during the wet and the dry seasons in 2009 and 2010 on a selection of 13 out of 35 stations. Measurements of Sediment Oxygen Demand (SOD) and nutrient fluxes at the sediment-water interface were performed using lab incubations with 15 cm diameter sediment cores. SOD fluctuated between 1327 ± 161 and 2248 ± 359 μmol m−2 h−1 for dry and wet seasons respectively. Silicate effluxes were also significantly higher during the wet seasons (89.4 ± 15.9 μmol m−2 h−1) than during the dry season (46.5 ± 11.4 μmol m−2 h−1). PO 4 fluxes were low all over the study period without seasonal trend. No significant difference was measured for DIN fluxes but there was a tendency for DIN uptake during the wet season (−2.9 ± 18.8 μmol m−2 h−1) and conversely an efflux during the dry season (24.3 ± 7.3 μmol m−2 h−1). SOD correlated to organic matter and chloropigment content of the sediments while silicate fluxes responded to enhanced chloropigments in the sediments. During both seasons, total benthic nutrient fluxes overwhelmed largely riverine inputs and benthic carbon mineralization rates approximated a significant proportion of the pelagic organic carbon production. We conclude that benthic processes in Laguna de Términos are largely driven by weather variability and that they contribute substantially to carbon and nutrient budgets in this shallow sub-tropical system. [ABSTRACT FROM AUTHOR]

Laboratory experiments on the New Zealand freshwater musselEchyridella menziesiiwere used to investigate the short-term effects (7–8 days) of food type on rates of biodeposition and benthic substrate respiration. Post-feeding biodeposition rates ranged from 0.34 to 1.52 mg g−1 h−1(mean = 0.50 mg  g−1 h−1) and were unaffected by the addition of toxin-producingMicrocystis. Addition of suspended sediment (30 mg L−1) visibly altered substrate composition, and increased total and inorganic biodeposit production rates by 24–33% compared to mussels fed commercial phytoplankton stock. Biodeposition rates of mussels in lake bed substrates were 38% higher than those in silica sand for identical feeding regimes, suggesting that a significant proportion of material produced in this experiment could have been derived from feeding on organic matter in the lake bed sediments. Respiration rates were higher in treatments withMicrocystisbut were unaffected by the presence of mussels. This laboratory study suggests that biodeposition byE. menziesiiis resilient to short-term exposure toMicrocystis, and highlights the ability of mussels to alter benthic substrate composition by incorporating suspended sediment into substrates. [ABSTRACT FROM PUBLISHER]

The role of labile organic material and macrofaunal activity in benthic respiration and nutrient regeneration have been tested in sublittoral fine sand sediments from the Gulf of Valencia (northwestern Mediterranean Sea). Three experimental setups were made using benthic chambers. One experiment was performed in-situ through the annual cycle in a well-sorted fine sand community. The remaining experiments were carried out with mesocosms under laboratory conditions: one with different concentrations of organic enrichment (mussel meat and concentrated diatoms culture), and the other adding two different densities of the endofaunal bivalve Spisula subtruncata. Biochemical variables in surface sediment and changes in oxygen consumption and nutrient fluxes throughout incubation period were studied in each experiment. In the in situ incubations, dissolved oxygen (DO) fluxes showed a strong correlation with sedimentary biopolymeric fraction of organic carbon. Organic enrichment in the laboratory experiments was responsible for increased benthic respiration. However, sediment response (expressed as DO uptake and dissolved inorganic nitrogen-DIN-release) between oligotrophic and eutrophic conditions was more intense than between eutrophic and hypertrophic conditions. S. subtruncata abundances close to 400 and 850 ind m also intensified benthic metabolism. DO uptake and DIN production in mesocosms with added fauna were between 60 and 75 % and 65-100 % higher than in the control treatment respectively. The results of these three experiments suggest that the macrobenthic community may increase the benthic respiration by roughly a factor of two in these bottoms, where S. subtruncata is one of the dominant species. Both organic enrichment and macrobenthic community in general, and S. subtruncata in particular, did not seem to have a relevant role in P and Si cycles in these sediments. [ABSTRACT FROM AUTHOR]

This study aimed to assess the benthic ecosystem trophic status in a heavily polluted marine area and the response of the microbenthic community to multiple and diffuse anthropogenic impacts, integrating information coming from the active and resting (plankton's cysts) components of microbenthos. Two sampling campaigns were carried out in the period 2013-2014 and four sampling sites at different levels of industrial contamination were chosen within the first and second inlet of the Mar Piccolo of Taranto. The chemical contamination affected to a higher extent the active microbenthos than the resting one. In the central part of the first inlet, characterised by more marine features, thrives a very rich and biodiverse microbenthic community. In contrast, at the polluted site near the military navy arsenal, extremely low densities (9576 ± 1732 cells cm) were observed for active microbenthos, but not for the resting community. Here, the high level of contamination selected for tychopelagic diatom species, i.e., thriving just above the surface sediments, while the other life forms died or moved away. Following the adoption of a 10 μm mesh, for the first time, resting spores produced by small diatoms of the genus Chaetoceros were found. Our results further indicate that although the Mar Piccolo is very shallow, the benthic system is scarcely productive, likely as a consequence of the accumulated contaminants in the surface sediments that probably interfere with the proper functioning of the benthic ecosystem. [ABSTRACT FROM AUTHOR]

This study quantified the coastal gradients of salinity, temperature, nutrients, chlorophyll and oxygen along a transect from 5 to 18 m depth in the northeastern Gulf of Mexico (NEGOM) through measurements of water column profiles over 4.5-years and recordings of probes mounted at 0.5 m above the seafloor over 2-years. The main goal was to determine the influences of the coastal gradients on water column oxygen concentration distributions. Apalachicola River discharge affected the study region as reflected in low-salinity surface layers. Decreasing rates of oxygen production and consumption from the shallowest station to the deepest station were attributed to measured coastal gradients of nutrients and the decreasing influence of seafloor processes with increasing distance from shore. Water column photosynthetic oxygen production at a realistic irradiance of 200 μE m −2 s −1 ranged from 0.5 to 4.5 mmol O 2 m −3 h −1 , and dark consumption rates from 0.2 to 2.6 mmol O 2 m −3 h −1 . Based on July irradiance profiles and associated production and consumption rates, the water column in July 2009 produced 0.9 (1SD=0.2) g C m −2 d −1 with rates remaining relatively constant over the length of this coastal transect. Benthic boundary layer production reaching 26–43% of the surface layer production underlines the role of the benthic boundary layer for production in the inner shelf. Oxygen in the benthic boundary layer never decreased below 73% air saturation, and hypoxic zones, as reported from shelf areas west of the study region, did not occur. Oxygen production exceeded consumption suggesting a net autotrophic system. [ABSTRACT FROM AUTHOR]

Accidental oil well blowouts have the potential to introduce large quantities of hydrocarbons into the deep sea and disperse toxic contaminants to midwater and seafloor areas over ocean-basin scales. Our ability to assess the environmental impacts of these events is currently impaired by our limited understanding of how resident communities are affected. This study examined how two treatment levels of a water accommodated fraction of crude oil affected the oxygen consumption rate of a natural, deep-sea benthic community. We also investigated the resident microbial community’s response to hydrocarbon contamination through quantification of phospholipid fatty acids (PLFAs) and their stable carbon isotope (δ 13 C) values. Sediment community oxygen consumption rates increased significantly in response to increasing levels of contamination in the overlying water of oil-treated microcosms, and bacterial biomass decreased significantly in the presence of oil. Multivariate ordination of PLFA compositional (mol%) data showed that the structure of the microbial community changed in response to hydrocarbon contamination. However, treatment effects on the δ 13 C values of individual PLFAs were not statistically significant. Our data demonstrate that deep-sea benthic microbes respond to hydrocarbon exposure within 36 h. [ABSTRACT FROM AUTHOR]

Wetland ecosystems in agricultural areas often become progressively more isolated from main water bodies. Stagnation favors the accumulation of organic matter as the supply of electron acceptors with water renewal is limited. In this context it is expected that nitrogen recycling prevails over nitrogen dissipation. To test this hypothesis, denitrification rates, fluxes of dissolved oxygen (SOD), inorganic carbon (DIC) and nitrogen and sediment features were measured in winter and summer 2007 on 22 shallow riverine wetlands in the Po River Plain (Northern Italy). Fluxes were determined from incubations of intact cores by measurement of concentration changes or isotope pairing in the case of denitrification. Sampled sites were eutrophic to hypertrophic; 10 were connected and 12 were isolated from the adjacent rivers, resulting in large differences in nitrate concentrations in the water column (from <5 to 1,133 μM). Benthic metabolism and denitrification rates were investigated by two overarching factors: season and hydrological connectivity. SOD and DIC fluxes resulted in respiratory quotients greater than one at most sampling sites. Sediment respiration was coupled to both ammonium efflux, which increased from winter to summer, and nitrate consumption, with higher rates in river-connected wetlands. Denitrification rates measured in river-connected wetlands (35-1,888 μmol N m h) were up to two orders of magnitude higher than rates measured in isolated wetlands (2-231 μmol N m h), suggesting a strong regulation of the process by nitrate availability. These rates were also significantly higher in summer (9-1,888 μmol N m h) than in winter (2-365 μmol N m h). Denitrification supported by water column nitrate (D) accounted for 60-100% of total denitrification (Dtot); denitrification coupled to nitrification (D) was probably controlled by limited oxygen availability within sediments. Denitrification efficiency, calculated as the ratio between N removal via denitrification and N regeneration, and the relative role of denitrification for organic matter oxidation, were high in connected wetlands but not in isolated sites. This study confirms the importance of restoring hydraulic connectivity of riverine wetlands for the maintenance of important biogeochemical functions such as nitrogen removal via denitrification. [ABSTRACT FROM AUTHOR]

Benthic respiration, sediment–water nutrient fluxes, denitrification and dissimilatory nitrate reduction to ammonium (DNRA) were measured in the upper section of the Parker River Estuary from 1993 to 2006. This site experiences large changes in salinity over both short and long time scales. Sediment respiration ranged from 6 to 52 mmol m day and was largely controlled by temperature. Nutrient fluxes were dominated by ammonium fluxes, which ranged from a small uptake of −0.3 to an efflux of over 8.2 mmol N m day. Ammonium fluxes were most highly correlated with salinity and laboratory experiments demonstrated that ammonium fluxes increased when salinity increased. The seasonal pattern of DNRA closely followed salinity. DNRA rates were extremely low in March, less than 0.1 mmol m day, but increased to 2.0 mmol m day in August. In contrast, denitrification rates were inversely related to salinity, ranging from 1 mmol m day during the spring and fall to less than 0.2 mmol m day in late summer. Salinity appears to exert a major control on the nitrogen cycle at this site, and partially decouples sediment ammonium fluxes from organic matter decomposition. [ABSTRACT FROM AUTHOR]

Anthropogenic alteration of terrestrial shorelines can have pronounced effects on marine environments at the upland-marsh boundary. Possible terrestrial development effects on several physical and biological variables of high-marsh habitats were examined along developed and undeveloped shorelines in an ocean-dominated, southeastern US estuary. Analyses of sediment characteristics suggested development of the upland boundary affected physical conditions within the high-marsh. For example, pore water salinities were greater along undeveloped shorelines during a non-drought period even after rain events. Significant floral and faunal differences also existed between shoreline treatments. Black needle rush stems were significantly taller and marsh periwinkle densities significantly greater, but eastern coffee bean snail densities were significantly reduced along developed shorelines. Benthic infaunal community abundance and composition also were significantly different between shoreline treatments with sand fly larvae, human pest precursors, either only present or present in greater densities along developed shorelines. Sediment respirometry experiments indicated significant differences in heterotrophic and autotrophic processes occurring between shoreline treatments. Greater sediment surface temperatures along developed shorelines provided one possible mechanism driving high-marsh responses to boundary alteration. The history and extent of shoreline development along with a tendency in ocean-dominated southeastern marshes to resist change likely influenced current ecological conditions within our high-marsh study areas. A greater understanding of the driving mechanisms producing localized effects on salt marshes and recognizing regional differences in marsh resistance to change will facilitate predictions of shoreline development consequences and help in proposing effective management strategies for coastal boundaries. [ABSTRACT FROM AUTHOR]

Background: Agricultural development of former wetlands has resulted in many headwater streams being sourced by subsurface agricultural drainage systems. Subsurface drainage inputs can significantly influence stream environmental conditions, such as temperature, hydrology, and water chemistry, that drive ecological function. However, ecological assessments of subsurface drainage impacts are rare. We assessed the impact of an agricultural drainage system on cellulose decomposition and benthic respiration using a paired stream study in a headwater branch of Nissouri Creek, in Ontario, Canada. Adjacent first order segments sourced by a spring-fed marsh and a cropped field with subsurface drainage, as well as the adjoining trunk segment, were sampled over a year using the cotton strip assay to measure cellulose decomposition and benthic respiration., Results: Assessments of cellulose decomposition revealed a one-third reduction in the drainage-sourced segment compared to marsh-sourced segment. Between segment differences in cellulose decomposition were associated with reduced summer temperatures in the drainage-sourced segment. Impacts of stream cooling from the drainage-sourced segment were transmitted downstream as cellulose decomposition was slower than expected throughout the drainage-sourced segment and for several hundred meters down the adjoining trunk segment. Benthic respiration only differed between the drainage- and marsh-sourced segments in spring, when stream temperatures were similar., Conclusions: Our findings suggest there may be a widespread reduction in cellulose decomposition in streams across similar agricultural regions where subsurface drainage is prevalent. However, cooling of streams receiving significant amounts of water inputs from subsurface drainage systems may impart increased resiliency to future climate warming., Competing Interests: Competing interestsThe authors declare they have no competing interests., (© The Author(s) 2022.)